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{"sheet":"Variants_core","index":0,"n_rows":18682,"n_cols":21,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Silva-Pereira et al; 2019. Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)"]
["Table S6: Unique variants found in strains of Mycobacterium pinnipedii compared to other strains of the Mycobacterium tuberculosis complex."]
[]
["Samples","Contig","Pos","Ref","Var","Score","Var_cov","Var_frac","Type","Ref_nt","Var_nt","Ref_nt_pos_change","Ref_aa_pos_change","Frameshift","Gene_ID","Locus_tag","Gene_name","Function","Upstream_feature","Downstream_feature","snpEff_type"]
["G01222","NC_000962",1977,"A","G",{"v":804932,"d":"804,932"},"31.0","1.00",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODERATE"]
["G01491","NC_000962",1977,"A","G","2269.18","69.0","0.97",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODIFIER"]
["G01492","NC_000962",1977,"A","G","7445.88","243.0","0.99",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODIFIER"]
["G01498","NC_000962",1977,"A","G","1349.13","46.0","1.00",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODIFIER"]
[7011,"NC_000962",1977,"A","G","2529.12","87.0","0.99",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODERATE"]
[7739,"NC_000962",1977,"A","G","2282.27","81.0","1.00",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODERATE"]
[58,"NC_000962",1977,"A","G",{"v":708588,"d":"708,588"},"26.0","0.96",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODIFIER"]
[64,"NC_000962",1977,"A","G",{"v":875403,"d":"875,403"},"31.0","1.00",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODIFIER"]
["MP2","NC_000962",1977,"A","G","9409.27","306.0","1.00",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODERATE"]
["MP1","NC_000962",1977,"A","G","8738.18","277.0","0.99",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionLOW"]
[54,"NC_000962",1977,"A","G",{"v":930502,"d":"930,502"},"32.0","1.00",{"$nulls":10},"Chromosomal replication initiator protein DnaA","DNA polymerase III beta subunit (EC 2.7.7.7)","intergenic_regionMODIFIER"]
["G01222","NC_000962",2532,"T","C",{"v":232558,"d":"232,558"},"8.0","1.00","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
["G01491","NC_000962",2532,"T","C","1291.08","40.0","0.98","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
["G01492","NC_000962",2532,"T","C","4195.36","138.0","0.97","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
["G01498","NC_000962",2532,"T","C",{"v":712023,"d":"712,023"},"22.0","1.00","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
[7011,"NC_000962",2532,"T","C","3192.61","100.0","0.99","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
[7739,"NC_000962",2532,"T","C","3261.46","101.0","1.00","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
[58,"NC_000962",2532,"T","C","1209.97","39.0","0.97","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
[64,"NC_000962",2532,"T","C","1729.52","58.0","0.98","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
["MP2","NC_000962",2532,"T","C","7778.81","233.0","1.00","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
["MP1","NC_000962",2532,"T","C","9089.98","271.0","1.00","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
[54,"NC_000962",2532,"T","C","1773.39","67.0","0.87","Synon","ttg","Ctg","481T>C","Leu161Leu",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","synonymous_variantLOW"]
["G01222","NC_000962",3139,"C","G","1014.28","31.0","1.00","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantHIGH"]
["G01491","NC_000962",3139,"C","G","2612.71","88.0","0.94","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantHIGH"]
["G01492","NC_000962",3139,"C","G","7967.74","261.0","0.98","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantHIGH"]
["G01498","NC_000962",3139,"C","G","1298.87","46.0","0.90","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantHIGH"]
[7011,"NC_000962",3139,"C","G","3623.25","112.0","1.00","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantHIGH"]
[7739,"NC_000962",3139,"C","G","3218.78","99.0","0.98","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantHIGH"]
[58,"NC_000962",3139,"C","G",{"v":921334,"d":"921,334"},"29.0","1.00","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantMODERATE"]
[64,"NC_000962",3139,"C","G","1647.22","53.0","0.88","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantMODERATE"]
["MP2","NC_000962",3139,"C","G","9847.37","287.0","0.99","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantHIGH"]
["MP1","NC_000962",3139,"C","G","10863.2","315.0","1.00","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantHIGH"]
[54,"NC_000962",3139,"C","G","1873.64","66.0","0.99","Nonsyn","gcc","gGc","1088C>G","Ala363Gly",null,"fig|83332.12.peg.2","Rv0002","dnaN","DNA polymerase III beta subunit (EC 2.7.7.7)","Chromosomal replication initiator protein DnaA","DNA recombination and repair protein RecF","missense_variantMODERATE"]
["G01222","NC_000962",4013,"T","C","995.45","32.0","1.00","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantLOW"]
["G01491","NC_000962",4013,"T","C","3209.22","101.0","1.00","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantLOW"]
["G01492","NC_000962",4013,"T","C","9638.71","305.0","1.00","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantLOW"]
["G01498","NC_000962",4013,"T","C","2149.16","68.0","1.00","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantLOW"]
[7011,"NC_000962",4013,"T","C","3923.39","118.0","1.00","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantLOW"]
[7739,"NC_000962",4013,"T","C","3195.52","96.0","1.00","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantMODERATE"]
[58,"NC_000962",4013,"T","C","6532.84","196.0","0.99","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantMODERATE"]
[64,"NC_000962",4013,"T","C","4509.03","147.0","0.89","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantMODERATE"]
["MP2","NC_000962",4013,"T","C","7201.15","210.0","1.00","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantLOW"]
["MP1","NC_000962",4013,"T","C","8114.01","237.0","1.00","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantLOW"]
[54,"NC_000962",4013,"T","C","5749.44","180.0","0.93","Nonsyn","atc","aCc","734T>C","Ile245Thr",null,"fig|83332.12.peg.3","Rv0003","recF","DNA recombination and repair protein RecF","DNA polymerase III beta subunit (EC 2.7.7.7)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","missense_variantMODERATE"]
["G01222","NC_000962",6446,"G","T","1185.24","37.0","1.00","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantMODERATE"]
["G01491","NC_000962",6446,"G","T","2532.46","80.0","1.00","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantMODERATE"]
["G01492","NC_000962",6446,"G","T","10588.5","342.0","0.99","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantMODERATE"]
["G01498","NC_000962",6446,"G","T","1996.99","68.0","1.00","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantMODERATE"]
[7011,"NC_000962",6446,"G","T","3143.04","98.0","1.00","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantMODERATE"]
[7739,"NC_000962",6446,"G","T","3762.12","120.0","0.99","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantMODERATE"]
[58,"NC_000962",6446,"G","T","1898.19","62.0","1.00","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantLOW"]
[64,"NC_000962",6446,"G","T","1341.71","43.0","1.00","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantLOW"]
["MP2","NC_000962",6446,"G","T","9679.33","292.0","1.00","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantMODERATE"]
["MP1","NC_000962",6446,"G","T","10573.3","323.0","0.99","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantMODERATE"]
[54,"NC_000962",6446,"G","T","3440.98","110.0","0.96","Nonsyn","gcg","Tcg","1240G>T","Ala414Ser",null,"fig|83332.12.peg.5","Rv0005","gyrB","DNA gyrase subunit B (EC 5.99.1.3)","Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives","DNA gyrase subunit A (EC 5.99.1.3)","missense_variantMODERATE"]
["G01222","NC_000962",7362,"G","C",{"v":600797,"d":"600,797"},"19.0","1.00","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",7362,"G","C","3417.08","105.0","1.00","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",7362,"G","C","7612.53","248.0","1.00","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",7362,"G","C","1932.64","61.0","0.98","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",7362,"G","C","4076.05","128.0","1.00","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",7362,"G","C","3247.77","102.0","1.00","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",7362,"G","C","5168.7","156.0","1.00","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",7362,"G","C","5417.44","164.0","0.99","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",7362,"G","C","9756.59","285.0","1.00","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",7362,"G","C","9793.75","288.0","1.00","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",7362,"G","C","12099.6","378.0","0.97","Nonsyn","gag","Cag","61G>C","Glu21Gln",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",7585,"G","C",{"v":995171,"d":"995,171"},"32.0","1.00","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",7585,"G","C","4385.02","137.0","1.00","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",7585,"G","C","9412.03","301.0","0.99","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",7585,"G","C","2692.28","88.0","1.00","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",7585,"G","C","4027.94","127.0","1.00","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",7585,"G","C","3060.34","98.0","1.00","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",7585,"G","C",{"v":744631,"d":"744,631"},"24.0","1.00","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",7585,"G","C","1162.06","41.0","0.87","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",7585,"G","C","8662.35","253.0","1.00","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",7585,"G","C","8399.69","245.0","1.00","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",7585,"G","C",{"v":681448,"d":"681,448"},"21.0","1.00","Nonsyn","agc","aCc","284G>C","Ser95Thr",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",9143,"T","C","1236.85","38.0","1.00","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",9143,"T","C","4088.02","128.0","0.99","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",9143,"T","C","11908.8","386.0","0.98","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",9143,"T","C","2037.01","64.0","1.00","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",9143,"T","C","3331.04","106.0","0.99","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",9143,"T","C","3513.18","112.0","1.00","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",9143,"T","C","4016.57","132.0","1.00","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",9143,"T","C","3630.9","113.0","1.00","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",9143,"T","C","8594.08","253.0","1.00","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",9143,"T","C","8560.35","253.0","0.99","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",9143,"T","C","4103.27","138.0","0.99","Synon","att","atC","1842T>C","Ile614Ile",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",9304,"G","A","1024.81","33.0","0.97","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",9304,"G","A","4984.16","155.0","0.99","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",9304,"G","A","9465.89","308.0","1.00","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",9304,"G","A","2140.58","71.0","1.00","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",9304,"G","A","3438.65","113.0","1.00","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",9304,"G","A","3278.72","108.0","1.00","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",9304,"G","A","1287.78","46.0","0.98","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",9304,"G","A","2347.04","80.0","0.93","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",9304,"G","A","9855.89","291.0","1.00","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",9304,"G","A","9453.64","280.0","1.00","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",9304,"G","A","3049.56","97.0","1.00","Nonsyn","ggc","gAc","2003G>A","Gly668Asp",null,"fig|83332.12.peg.6","Rv0006","gyrA","DNA gyrase subunit A (EC 5.99.1.3)","DNA gyrase subunit B (EC 5.99.1.3)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",10049,"T","C","1422.05","49.0","1.00","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",10049,"T","C","3513.12","114.0","1.00","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",10049,"T","C","7038.54","226.0","0.97","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",10049,"T","C","1347.88","48.0","0.92","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",10049,"T","C","2429.99","79.0","0.99","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",10049,"T","C","2577.75","84.0","0.99","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",10049,"T","C","1974.1","65.0","0.93","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",10049,"T","C","1610.86","57.0","0.88","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",10049,"T","C","5152.69","155.0","1.00","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",10049,"T","C","4930.53","149.0","1.00","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",10049,"T","C","2523.61","83.0","0.97","Synon","cgt","cgC","87T>C","Arg29Arg",null,"fig|83332.12.peg.7",null,null,"hypothetical protein","DNA gyrase subunit A (EC 5.99.1.3)","FIG187021: hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",11879,"A","G","1272.75","42.0","1.00","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
["G01491","NC_000962",11879,"A","G","3712.11","117.0","1.00","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
["G01492","NC_000962",11879,"A","G","8467.69","275.0","1.00","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantLOW"]
["G01498","NC_000962",11879,"A","G","1904.32","62.0","0.98","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
[7011,"NC_000962",11879,"A","G","2683.64","83.0","1.00","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
[7739,"NC_000962",11879,"A","G","2679.94","82.0","1.00","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
[58,"NC_000962",11879,"A","G","179.53","7.0","1.00","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
[64,"NC_000962",11879,"A","G",{"v":459402,"d":"459,402"},"15.0","0.94","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
["MP2","NC_000962",11879,"A","G","7577.42","223.0","1.00","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
["MP1","NC_000962",11879,"A","G","5800.12","171.0","1.00","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
[54,"NC_000962",11879,"A","G",{"v":211804,"d":"211,804"},"7.0","1.00","Nonsyn","tcc","Ccc","433T>C","Ser145Pro",null,"fig|83332.12.peg.11","Rv0008c",null,"FIG024317: hypothetical protein","hypothetical protein","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","missense_variantMODERATE"]
["G01222","NC_000962",13482,"G","A","1119.57","34.0","1.00",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",13482,"G","A","2817.06","92.0","0.97",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",13482,"G","A","8947.13","286.0","0.99",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",13482,"G","A","1766.6","59.0","0.95",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",13482,"G","A","1488.91","60.0","0.98",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",13482,"G","A","1486.14","60.0","0.97",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
[58,"NC_000962",13482,"G","A","1116.85","40.0","0.95",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
[64,"NC_000962",13482,"G","A",{"v":448917,"d":"448,917"},"15.0","1.00",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",13482,"G","A","6161.78","181.0","1.00",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",13482,"G","A","7487.87","221.0","1.00",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
[54,"NC_000962",13482,"G","A","6998.7","232.0","0.99",{"$nulls":10},"FIG020554: membrane protein","FIG018426: putative septation inhibitor protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",14785,"T","C",{"v":530945,"d":"530,945"},"17.0","1.00","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
["G01491","NC_000962",14785,"T","C","4908.39","153.0","1.00","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
["G01492","NC_000962",14785,"T","C","8952.39","285.0","1.00","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
["G01498","NC_000962",14785,"T","C","1271.09","39.0","1.00","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
[7011,"NC_000962",14785,"T","C","3505.12","106.0","1.00","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
[7739,"NC_000962",14785,"T","C","3030.71","92.0","1.00","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
[58,"NC_000962",14785,"T","C","5779.85","173.0","0.96","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
[64,"NC_000962",14785,"T","C","3152.28","98.0","0.95","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
["MP2","NC_000962",14785,"T","C","7833.35","229.0","1.00","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
["MP1","NC_000962",14785,"T","C","8179.18","237.0","1.00","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
[54,"NC_000962",14785,"T","C","6670.89","204.0","0.97","Nonsyn","tgc","Cgc","652T>C","Cys218Arg",null,"fig|83332.12.peg.16","Rv0012",null,"FIG215594: Membrane spanning protein","FIG018426: putative septation inhibitor protein","Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)","missense_variantMODERATE"]
["G01222","NC_000962",18064,"C","A","605.07","19.0","1.00","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
["G01491","NC_000962",18064,"C","A","5019.63","157.0","0.99","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
["G01492","NC_000962",18064,"C","A","7936.36","265.0","0.96","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
["G01498","NC_000962",18064,"C","A","1881.57","80.0","0.85","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
[7011,"NC_000962",18064,"C","A","1860.2","79.0","0.98","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
[7739,"NC_000962",18064,"C","A","1034.45","46.0","1.00","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
[58,"NC_000962",18064,"C","A","1329.39","57.0","0.77","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
[64,"NC_000962",18064,"C","A","1604.3","111.0","0.59","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
["MP2","NC_000962",18064,"C","A","4397.47","135.0","1.00","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
["MP1","NC_000962",18064,"C","A","4484.42","143.0","1.00","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
[54,"NC_000962",18064,"C","A","9230.71","331.0","0.93","Synon","ccg","ccT","699G>T","Pro233Pro",null,"fig|83332.12.peg.19","Rv0015c","pknA","Serine/threonine-protein kinase PknA (EC 2.7.11.1)","Serine/threonine-protein kinase PknB (EC 2.7.11.1)","FtsI-like cell elongation transpeptidase","synonymous_variantLOW"]
["G01222","NC_000962",21795,"G","A",{"v":253262,"d":"253,262"},"12.0","1.00","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["G01491","NC_000962",21795,"G","A","1660.99","53.0","1.00","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["G01492","NC_000962",21795,"G","A",{"v":809199,"d":"809,199"},"27.0","1.00","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["G01498","NC_000962",21795,"G","A",{"v":304784,"d":"304,784"},"10.0","1.00","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[7011,"NC_000962",21795,"G","A","2063.91","66.0","1.00","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[7739,"NC_000962",21795,"G","A","2103.0","74.0","0.99","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[58,"NC_000962",21795,"G","A",{"v":784603,"d":"784,603"},"26.0","1.00","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[64,"NC_000962",21795,"G","A",{"v":361282,"d":"361,282"},"18.0","0.75","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["MP2","NC_000962",21795,"G","A","6138.93","182.0","1.00","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["MP1","NC_000962",21795,"G","A","4306.91","128.0","1.00","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[54,"NC_000962",21795,"G","A","13271.9","428.0","0.99","Nonsyn","ccg","Tcg","1378C>T","Pro460Ser",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["G01222","NC_000962",21819,"A","C","194.71","8.0","1.00","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["G01491","NC_000962",21819,"A","C","1718.1","53.0","1.00","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["G01492","NC_000962",21819,"A","C","1342.55","45.0","0.96","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["G01498","NC_000962",21819,"A","C",{"v":231912,"d":"231,912"},"8.0","1.00","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[7011,"NC_000962",21819,"A","C","2053.15","67.0","0.97","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[7739,"NC_000962",21819,"A","C","1875.62","65.0","0.98","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[58,"NC_000962",21819,"A","C","3636.19","121.0","0.97","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[64,"NC_000962",21819,"A","C","4279.26","134.0","0.97","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["MP2","NC_000962",21819,"A","C","6214.22","184.0","1.00","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["MP1","NC_000962",21819,"A","C","3894.87","115.0","1.00","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
[54,"NC_000962",21819,"A","C","16390.5","518.0","0.96","Nonsyn","tct","Gct","1354T>G","Ser452Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","missense_variantMODERATE"]
["G01222","NC_000962",22264,"T","G","722.97","24.0","1.00","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
["G01491","NC_000962",22264,"T","G","4655.84","152.0","0.97","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
["G01492","NC_000962",22264,"T","G","9690.16","310.0","0.99","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
["G01498","NC_000962",22264,"T","G","1694.48","68.0","0.84","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
[7011,"NC_000962",22264,"T","G","3384.81","104.0","1.00","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
[7739,"NC_000962",22264,"T","G","2918.08","89.0","0.99","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
[58,"NC_000962",22264,"T","G","2218.86","69.0","0.99","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
[64,"NC_000962",22264,"T","G","2219.66","70.0","0.99","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
["MP2","NC_000962",22264,"T","G","6899.66","201.0","1.00","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
["MP1","NC_000962",22264,"T","G","8252.08","240.0","1.00","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
[54,"NC_000962",22264,"T","G","17632.0","528.0","0.99","Synon","gca","gcC","909A>C","Ala303Ala",null,"fig|83332.12.peg.22","Rv0018c","ppp","Serine/threonine phosphatase PPP (EC 3.1.3.16)","FtsW-like cell division membrane protein CA_C0505","FHA-domain-containing protein","synonymous_variantLOW"]
["G01222","NC_000962",23174,"C","A",{"v":468305,"d":"468,305"},"15.0","0.94",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionLOW"]
["G01491","NC_000962",23174,"C","A","4860.6","157.0","0.98",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",23174,"C","A","10096.3","341.0","0.98",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",23174,"C","A","2582.09","86.0","1.00",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",23174,"C","A","2413.88","85.0","1.00",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",23174,"C","A","2532.04","94.0","1.00",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionMODIFIER"]
[58,"NC_000962",23174,"C","A","1129.52","38.0","1.00",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionMODIFIER"]
[64,"NC_000962",23174,"C","A",{"v":709527,"d":"709,527"},"24.0","0.92",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionLOW"]
["MP2","NC_000962",23174,"C","A","6239.1","187.0","1.00",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",23174,"C","A","6763.68","202.0","1.00",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionMODIFIER"]
[54,"NC_000962",23174,"C","A","9613.45","296.0","0.98",{"$nulls":10},"Serine/threonine phosphatase PPP (EC 3.1.3.16)","FHA-domain-containing protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",26053,"C","G",{"v":749242,"d":"749,242"},"26.0","1.00","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
["G01491","NC_000962",26053,"C","G","5217.14","166.0","1.00","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
["G01492","NC_000962",26053,"C","G","11593.1","377.0","0.98","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
["G01498","NC_000962",26053,"C","G","2036.75","69.0","0.93","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
[7011,"NC_000962",26053,"C","G","2974.72","95.0","1.00","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
[7739,"NC_000962",26053,"C","G","2686.2","86.0","1.00","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
[58,"NC_000962",26053,"C","G","4816.81","147.0","1.00","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
[64,"NC_000962",26053,"C","G","4967.05","153.0","0.99","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
["MP2","NC_000962",26053,"C","G","7180.74","212.0","1.00","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
["MP1","NC_000962",26053,"C","G","7997.42","236.0","1.00","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantMODERATE"]
[54,"NC_000962",26053,"C","G","3897.56","123.0","1.00","Nonsyn","gct","Cct","829G>C","Ala277Pro",null,"fig|83332.12.peg.25","Rv0021c",null,"putative oxidoreductase, nitronate monooxygenase family","tRNA-Leu-CAG","WhiB family transcriptional regulator","missense_variantLOW"]
["G01222","NC_000962",26959,"C","G",{"v":781702,"d":"781,702"},"26.0","1.00",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
["G01491","NC_000962",26959,"C","G","4679.47","145.0","0.99",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
["G01492","NC_000962",26959,"C","G","11496.2","369.0","1.00",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
["G01498","NC_000962",26959,"C","G","2857.39","91.0","1.00",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
[7011,"NC_000962",26959,"C","G","1867.87","68.0","1.00",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
[7739,"NC_000962",26959,"C","G","1784.65","64.0","0.98",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
[58,"NC_000962",26959,"C","G","2959.1","97.0","0.97",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
[64,"NC_000962",26959,"C","G","5079.38","163.0","1.00",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
["MP2","NC_000962",26959,"C","G","7134.96","213.0","1.00",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
["MP1","NC_000962",26959,"C","G","8390.66","250.0","1.00",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
[54,"NC_000962",26959,"C","G","3799.32","121.0","0.98",{"$nulls":10},"putative oxidoreductase, nitronate monooxygenase family","WhiB family transcriptional regulator","intergenic_regionMODERATE"]
["G01222","NC_000962",27469,"A","G","1413.31","43.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
["G01491","NC_000962",27469,"A","G","4880.46","149.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
["G01492","NC_000962",27469,"A","G","9550.78","299.0","0.98",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
["G01498","NC_000962",27469,"A","G","1983.74","61.0","0.98",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
[7011,"NC_000962",27469,"A","G","3174.79","96.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
[7739,"NC_000962",27469,"A","G","3743.04","114.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
[58,"NC_000962",27469,"A","G","4822.2","155.0","0.97",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
[64,"NC_000962",27469,"A","G","2149.64","69.0","0.96",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
["MP2","NC_000962",27469,"A","G","6673.88","192.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
["MP1","NC_000962",27469,"A","G","6236.91","181.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
[54,"NC_000962",27469,"A","G","17233.8","511.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionLOW"]
["G01222","NC_000962",27551,"C","G","1204.26","41.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
["G01491","NC_000962",27551,"C","G","5135.36","159.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
["G01492","NC_000962",27551,"C","G","10781.0","343.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
["G01498","NC_000962",27551,"C","G","2311.06","76.0","0.93",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
[7011,"NC_000962",27551,"C","G","2412.57","79.0","0.99",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
[7739,"NC_000962",27551,"C","G","3077.8","96.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
[58,"NC_000962",27551,"C","G",{"v":576125,"d":"576,125"},"19.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionHIGH"]
[64,"NC_000962",27551,"C","G",{"v":472109,"d":"472,109"},"15.0","1.00",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionLOW"]
["MP2","NC_000962",27551,"C","G","6264.95","188.0","0.99",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
["MP1","NC_000962",27551,"C","G","5831.23","176.0","0.99",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionMODIFIER"]
[54,"NC_000962",27551,"C","G","1251.19","46.0","0.96",{"$nulls":10},"WhiB family transcriptional regulator","HTH-type transcriptional regulator Rv0023","intergenic_regionLOW"]
["G01222","NC_000962",30980,"CC","CCGATC",{"v":699214,"d":"699,214"},"22.0","0.96","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
["G01491","NC_000962",30980,"CC","CCGATC","4532.47","147.0","0.97","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
["G01492","NC_000962",30980,"CC","CCGATC","7947.41","271.0","0.95","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
["G01498","NC_000962",30980,"CC","CCGATC","1300.64","46.0","0.94","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
[7011,"NC_000962",30980,"CC","CCGATC","2073.15","69.0","0.96","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
[7739,"NC_000962",30980,"CC","CCGATC","1866.05","63.0","0.88","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
[58,"NC_000962",30980,"CC","CCGATC","1211.64","41.0","0.85","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
[64,"NC_000962",30980,"CC","CCGATC",{"v":371507,"d":"371,507"},"14.0","0.56","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantLOW"]
["MP2","NC_000962",30980,"CC","CCGATC","5806.07","179.0","0.97","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
["MP1","NC_000962",30980,"CC","CCGATC","6302.55","203.0","0.97","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
[54,"NC_000962",30980,"CC","CCGATC","11268.5","352.0","0.90","Insertion","accgccacg","aCCGATCgccacg","1261_1262insGATC","Ala421_Thr422fs","yes","fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","frameshift_variantMODERATE"]
["G01222","NC_000962",31057,"C","G","1105.17","34.0","1.00","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantHIGH"]
["G01491","NC_000962",31057,"C","G","6473.61","197.0","0.99","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantHIGH"]
["G01492","NC_000962",31057,"C","G","10500.8","326.0","0.98","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantHIGH"]
["G01498","NC_000962",31057,"C","G","2148.66","68.0","1.00","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantHIGH"]
[7011,"NC_000962",31057,"C","G","3420.96","108.0","1.00","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantHIGH"]
[7739,"NC_000962",31057,"C","G","3027.49","95.0","1.00","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantHIGH"]
[58,"NC_000962",31057,"C","G","4717.91","142.0","1.00","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",31057,"C","G","3844.32","119.0","1.00","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",31057,"C","G","8968.81","259.0","0.99","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantHIGH"]
["MP1","NC_000962",31057,"C","G","7761.84","231.0","1.00","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantHIGH"]
[54,"NC_000962",31057,"C","G","4017.24","126.0","0.98","Nonsyn","caa","Gaa","1336C>G","Gln446Glu",null,"fig|83332.12.peg.30","Rv0026",null,"FIG00821131: hypothetical protein","FIG00821242: hypothetical protein","FIG00822329: hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",34044,"T","C","1530.56","48.0","1.00",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODIFIER"]
["G01491","NC_000962",34044,"T","C","1974.59","63.0","1.00",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODERATE"]
["G01492","NC_000962",34044,"T","C","6338.39","204.0","0.98",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODERATE"]
["G01498","NC_000962",34044,"T","C","2229.62","71.0","1.00",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODERATE"]
[7011,"NC_000962",34044,"T","C","3092.57","98.0","0.99",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODERATE"]
[7739,"NC_000962",34044,"T","C","3470.94","108.0","1.00",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODERATE"]
[58,"NC_000962",34044,"T","C","1210.46","39.0","1.00",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODIFIER"]
[64,"NC_000962",34044,"T","C","1121.62","36.0","0.92",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODERATE"]
["MP2","NC_000962",34044,"T","C","8191.04","243.0","1.00",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODIFIER"]
["MP1","NC_000962",34044,"T","C","8634.23","252.0","1.00",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionMODIFIER"]
[54,"NC_000962",34044,"T","C","3887.35","131.0","0.99",{"$nulls":10},"Mobile element protein","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","intergenic_regionLOW"]
["G01222","NC_000962",36538,"T","C",{"v":802771,"d":"802,771"},"25.0","1.00","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
["G01491","NC_000962",36538,"T","C","6209.59","198.0","0.99","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
["G01492","NC_000962",36538,"T","C","12530.6","397.0","0.99","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
["G01498","NC_000962",36538,"T","C","2660.79","87.0","1.00","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
[7011,"NC_000962",36538,"T","C","2392.94","77.0","0.97","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
[7739,"NC_000962",36538,"T","C","1837.58","60.0","1.00","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
[58,"NC_000962",36538,"T","C","2687.85","82.0","0.98","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
[64,"NC_000962",36538,"T","C","2185.63","69.0","0.99","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
["MP2","NC_000962",36538,"T","C","7326.62","214.0","1.00","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
["MP1","NC_000962",36538,"T","C","5716.04","168.0","0.99","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantMODERATE"]
[54,"NC_000962",36538,"T","C","4034.36","126.0","0.97","Synon","tct","tcC","2244T>C","Ser748Ser",null,"fig|83332.12.peg.37","Rv0032","bioF2","Acetyltransferase (GNAT) domain / Serine palmitoyltransferase (EC 2.3.1.50)","Mobile element protein","Acyl carrier protein @ Acyl carrier protein associated with serine palmitoyltransferase","synonymous_variantLOW"]
["G01222","NC_000962",38121,"A","C",{"v":730364,"d":"730,364"},"22.0","0.96","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantLOW"]
["G01491","NC_000962",38121,"A","C","6127.42","197.0","0.97","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantLOW"]
["G01492","NC_000962",38121,"A","C","13067.0","421.0","0.97","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantLOW"]
["G01498","NC_000962",38121,"A","C","2594.11","90.0","0.91","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantLOW"]
[7011,"NC_000962",38121,"A","C","3306.5","107.0","1.00","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantLOW"]
[7739,"NC_000962",38121,"A","C","2022.22","64.0","0.98","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantLOW"]
[58,"NC_000962",38121,"A","C","1106.54","39.0","0.95","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",38121,"A","C","1410.23","51.0","0.94","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantLOW"]
["MP2","NC_000962",38121,"A","C","7955.28","233.0","1.00","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantLOW"]
["MP1","NC_000962",38121,"A","C","8309.51","245.0","1.00","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantLOW"]
[54,"NC_000962",38121,"A","C","803.18","26.0","1.00","Nonsyn","gaa","gCa","863A>C","Glu288Ala",null,"fig|83332.12.peg.40","Rv0035","fadD34","Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD34 @ FIG022758: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","Ketosteroid isomerase-related protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",41238,"A","G","1332.17","44.0","1.00",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
["G01491","NC_000962",41238,"A","G","6314.98","199.0","0.99",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
["G01492","NC_000962",41238,"A","G","12888.7","413.0","0.98",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
["G01498","NC_000962",41238,"A","G","3302.87","123.0","0.90",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
[7011,"NC_000962",41238,"A","G","3669.97","115.0","0.99",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
[7739,"NC_000962",41238,"A","G","2496.0","81.0","0.98",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
[58,"NC_000962",41238,"A","G",{"v":429177,"d":"429,177"},"13.0","1.00",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
[64,"NC_000962",41238,"A","G",{"v":326288,"d":"326,288"},"11.0","1.00",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
["MP2","NC_000962",41238,"A","G","6309.47","183.0","0.99",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
["MP1","NC_000962",41238,"A","G","7424.15","218.0","1.00",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
[54,"NC_000962",41238,"A","G","5312.36","160.0","0.99",{"$nulls":10},"putative membrane protein","UPF0301 protein YqgE","intergenic_regionMODIFIER"]
["G01222","NC_000962",42281,"C","A","1382.69","43.0","1.00","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
["G01491","NC_000962",42281,"C","A","3975.64","124.0","1.00","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
["G01492","NC_000962",42281,"C","A","5758.89","186.0","0.99","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
["G01498","NC_000962",42281,"C","A","1466.94","52.0","1.00","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
[7011,"NC_000962",42281,"C","A","2652.03","82.0","1.00","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
[7739,"NC_000962",42281,"C","A","2616.82","83.0","1.00","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
[58,"NC_000962",42281,"C","A","1252.15","40.0","1.00","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
[64,"NC_000962",42281,"C","A","1775.01","56.0","1.00","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
["MP2","NC_000962",42281,"C","A","6069.39","175.0","0.99","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
["MP1","NC_000962",42281,"C","A","4558.21","134.0","1.00","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantMODERATE"]
[54,"NC_000962",42281,"C","A","3615.95","119.0","0.98","Nonsyn","tgc","tTc","71G>T","Cys24Phe",null,"fig|83332.12.peg.44","Rv0039c",null,"Putative transmembrane protein","UPF0301 protein YqgE","Proline-rich 28 kDa antigen precursor","missense_variantLOW"]
["G01222","NC_000962",42967,"G","C",{"v":922813,"d":"922,813"},"29.0","1.00","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
["G01491","NC_000962",42967,"G","C","4539.72","143.0","0.99","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
["G01492","NC_000962",42967,"G","C","9520.11","306.0","0.99","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
["G01498","NC_000962",42967,"G","C","1804.39","57.0","1.00","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
[7011,"NC_000962",42967,"G","C","2689.79","95.0","1.00","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
[7739,"NC_000962",42967,"G","C","3252.44","106.0","1.00","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
[58,"NC_000962",42967,"G","C","3311.62","105.0","1.00","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
[64,"NC_000962",42967,"G","C","4128.39","133.0","0.96","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
["MP2","NC_000962",42967,"G","C","8167.53","240.0","1.00","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
["MP1","NC_000962",42967,"G","C","8384.31","247.0","1.00","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
[54,"NC_000962",42967,"G","C","4959.26","156.0","1.00","Synon","ccc","ccG","399C>G","Pro133Pro",null,"fig|83332.12.peg.45","Rv0040c","mtc28","Proline-rich 28 kDa antigen precursor","Putative transmembrane protein","Leucyl-tRNA synthetase (EC 6.1.1.4)","synonymous_variantLOW"]
["G01222","NC_000962",43945,"A","G",{"v":963608,"d":"963,608"},"31.0","1.00","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["G01491","NC_000962",43945,"A","G","3673.27","117.0","0.99","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["G01492","NC_000962",43945,"A","G","11659.2","370.0","0.99","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["G01498","NC_000962",43945,"A","G","2185.31","74.0","0.99","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[7011,"NC_000962",43945,"A","G","2382.78","79.0","1.00","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[7739,"NC_000962",43945,"A","G","2720.01","93.0","1.00","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[58,"NC_000962",43945,"A","G",{"v":813242,"d":"813,242"},"27.0","1.00","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[64,"NC_000962",43945,"A","G",{"v":864426,"d":"864,426"},"32.0","0.97","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantMODERATE"]
["MP2","NC_000962",43945,"A","G","8174.35","245.0","1.00","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["MP1","NC_000962",43945,"A","G","8262.89","250.0","1.00","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[54,"NC_000962",43945,"A","G",{"v":818551,"d":"818,551"},"28.0","0.93","Synon","gta","gtG","384A>G","Val128Val",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["G01222","NC_000962",44125,"A","G",{"v":807516,"d":"807,516"},"25.0","1.00","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["G01491","NC_000962",44125,"A","G","4192.32","136.0","0.97","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["G01492","NC_000962",44125,"A","G","10041.8","321.0","0.98","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["G01498","NC_000962",44125,"A","G","1598.68","61.0","0.88","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[7011,"NC_000962",44125,"A","G","3238.13","103.0","1.00","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[7739,"NC_000962",44125,"A","G","3247.72","99.0","1.00","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[58,"NC_000962",44125,"A","G",{"v":573263,"d":"573,263"},"19.0","0.95","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[64,"NC_000962",44125,"A","G",{"v":237069,"d":"237,069"},"8.0","1.00","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantMODERATE"]
["MP2","NC_000962",44125,"A","G","9319.07","272.0","1.00","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["MP1","NC_000962",44125,"A","G","7351.36","221.0","1.00","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
[54,"NC_000962",44125,"A","G",{"v":593256,"d":"593,256"},"20.0","0.95","Synon","aca","acG","564A>G","Thr188Thr",null,"fig|83332.12.peg.46","Rv0041","leuS","Leucyl-tRNA synthetase (EC 6.1.1.4)","Proline-rich 28 kDa antigen precursor","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["G01222","NC_000962",47899,"C","G",{"v":868973,"d":"868,973"},"28.0","1.00","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
["G01491","NC_000962",47899,"C","G","4403.69","142.0","0.96","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
["G01492","NC_000962",47899,"C","G","9573.33","315.0","0.98","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
["G01498","NC_000962",47899,"C","G","1738.3","64.0","0.90","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
[7011,"NC_000962",47899,"C","G","3980.99","124.0","1.00","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
[7739,"NC_000962",47899,"C","G","3361.55","105.0","0.97","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
[58,"NC_000962",47899,"C","G",{"v":794738,"d":"794,738"},"25.0","1.00","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
[64,"NC_000962",47899,"C","G",{"v":693777,"d":"693,777"},"25.0","0.93","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
["MP2","NC_000962",47899,"C","G","8762.0","255.0","1.00","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
["MP1","NC_000962",47899,"C","G","9117.64","270.0","1.00","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
[54,"NC_000962",47899,"C","G","1769.74","61.0","0.98","Nonsyn","ggc","Cgc","202G>C","Gly68Arg",null,"fig|83332.12.peg.49","Rv0043c",null,"Transcriptional regulator, GntR family","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
["G01222","NC_000962",50557,"T","C",{"v":550631,"d":"550,631"},"18.0","1.00","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
["G01491","NC_000962",50557,"T","C","2825.43","89.0","0.99","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
["G01492","NC_000962",50557,"T","C","6865.76","221.0","1.00","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
["G01498","NC_000962",50557,"T","C",{"v":971465,"d":"971,465"},"32.0","1.00","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
[7011,"NC_000962",50557,"T","C","3114.79","99.0","1.00","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
[7739,"NC_000962",50557,"T","C","2720.36","85.0","1.00","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
[58,"NC_000962",50557,"T","C",{"v":278675,"d":"278,675"},"9.0","1.00","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
[64,"NC_000962",50557,"T","C",{"v":404249,"d":"404,249"},"21.0","0.72","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
["MP2","NC_000962",50557,"T","C","7171.78","212.0","1.00","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
["MP1","NC_000962",50557,"T","C","7160.22","208.0","0.99","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
[54,"NC_000962",50557,"T","C",{"v":921555,"d":"921,555"},"33.0","0.89","Nonsyn","agg","Ggg","568A>G","Arg190Gly",null,"fig|83332.12.peg.52","Rv0046c","ino1","Inositol-1-phosphate synthase (EC 5.5.1.4)","Hydrolase Rv0045c, alpha/beta fold family","Transcriptional regulator, PadR family","missense_variantMODERATE"]
["G01222","NC_000962",51949,"A","G",{"v":782754,"d":"782,754"},"25.0","1.00","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",51949,"A","G","4255.01","132.0","1.00","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",51949,"A","G","10358.5","331.0","0.99","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",51949,"A","G","1787.72","59.0","0.98","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",51949,"A","G","3605.24","112.0","1.00","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",51949,"A","G","3568.35","110.0","0.99","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",51949,"A","G","2122.18","65.0","0.97","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",51949,"A","G","1778.4","54.0","1.00","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",51949,"A","G","8271.06","241.0","1.00","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",51949,"A","G","9568.97","276.0","1.00","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",51949,"A","G","1324.09","46.0","1.00","Nonsyn","gtc","gCc","749T>C","Val250Ala",null,"fig|83332.12.peg.54","Rv0048c",null,"hypothetical protein Rv0048c","Transcriptional regulator, PadR family","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",54394,"A","G","1089.75","33.0","1.00","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
["G01491","NC_000962",54394,"A","G","3909.03","123.0","1.00","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
["G01492","NC_000962",54394,"A","G","11249.0","354.0","1.00","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
["G01498","NC_000962",54394,"A","G","3129.22","102.0","1.00","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
[7011,"NC_000962",54394,"A","G","2614.0","83.0","1.00","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
[7739,"NC_000962",54394,"A","G","2847.63","94.0","0.99","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
[58,"NC_000962",54394,"A","G",{"v":899794,"d":"899,794"},"30.0","0.97","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
[64,"NC_000962",54394,"A","G","1196.84","39.0","1.00","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
["MP2","NC_000962",54394,"A","G","7893.29","229.0","1.00","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
["MP1","NC_000962",54394,"A","G","6892.19","204.0","1.00","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
[54,"NC_000962",54394,"A","G","3451.29","122.0","0.98","Synon","gca","gcG","1041A>G","Ala347Ala",null,"fig|83332.12.peg.56","Rv0050","ponA1","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","hypothetical protein","hypothetical protein Rv0051","synonymous_variantLOW"]
["G01222","NC_000962",62049,"A","G",{"v":812141,"d":"812,141"},"26.0","0.93","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",62049,"A","G","3787.07","125.0","0.97","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantHIGH"]
["G01492","NC_000962",62049,"A","G","9591.54","322.0","0.98","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantHIGH"]
["G01498","NC_000962",62049,"A","G","1827.04","64.0","1.00","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantHIGH"]
[7011,"NC_000962",62049,"A","G","2491.89","87.0","1.00","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantHIGH"]
[7739,"NC_000962",62049,"A","G","2100.67","75.0","1.00","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantLOW"]
[58,"NC_000962",62049,"A","G","1877.95","60.0","1.00","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantLOW"]
[64,"NC_000962",62049,"A","G","1895.73","62.0","0.98","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantLOW"]
["MP2","NC_000962",62049,"A","G","8350.22","245.0","1.00","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantLOW"]
["MP1","NC_000962",62049,"A","G","8218.98","250.0","0.99","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantLOW"]
[54,"NC_000962",62049,"A","G","1197.44","39.0","1.00","Nonsyn","agg","Ggg","1654A>G","Arg552Gly",null,"fig|83332.12.peg.64","Rv0058","dnaB","Replicative DNA helicase (DnaB) (EC 3.6.4.12) @ intein-containing","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",66957,"G","A","1199.39","38.0","1.00",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
["G01491","NC_000962",66957,"G","A","5654.04","182.0","0.97",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
["G01492","NC_000962",66957,"G","A","10510.4","342.0","0.97",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
["G01498","NC_000962",66957,"G","A","2358.98","85.0","0.94",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
[7011,"NC_000962",66957,"G","A","2716.59","90.0","0.99",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
[7739,"NC_000962",66957,"G","A","2135.33","74.0","0.95",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
[58,"NC_000962",66957,"G","A",{"v":148638,"d":"148,638"},"5.0","0.83",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
[64,"NC_000962",66957,"G","A",{"v":552699,"d":"552,699"},"19.0","1.00",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
["MP2","NC_000962",66957,"G","A","5906.16","178.0","0.99",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
["MP1","NC_000962",66957,"G","A","5717.68","174.0","1.00",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODERATE"]
[54,"NC_000962",66957,"G","A",{"v":264792,"d":"264,792"},"8.0","1.00",{"$nulls":10},"Endoglucanase A precursor (EC 3.2.1.4)","Putative oxidoreductase","intergenic_regionMODIFIER"]
["G01222","NC_000962",69989,"G","A",{"v":663865,"d":"663,865"},"23.0","1.00","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",69989,"G","A","3158.77","99.0","1.00","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",69989,"G","A","9349.02","305.0","0.99","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",69989,"G","A","1827.56","60.0","1.00","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",69989,"G","A","3048.36","100.0","1.00","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",69989,"G","A","2837.07","94.0","0.99","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",69989,"G","A","2209.28","73.0","1.00","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",69989,"G","A","2473.58","84.0","0.99","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",69989,"G","A","6826.52","203.0","1.00","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",69989,"G","A","7965.88","238.0","1.00","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",69989,"G","A","4139.57","140.0","0.99","Nonsyn","ggt","gAt","1301G>A","Gly434Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",70267,"G","T","1133.74","35.0","1.00","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",70267,"G","T","3131.3","96.0","1.00","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",70267,"G","T","9991.52","313.0","0.99","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",70267,"G","T","1944.65","62.0","1.00","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",70267,"G","T","2774.16","86.0","1.00","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",70267,"G","T","2975.54","94.0","1.00","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",70267,"G","T","5277.63","162.0","0.99","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",70267,"G","T","4334.1","136.0","1.00","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",70267,"G","T","7822.22","227.0","1.00","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",70267,"G","T","8057.71","238.0","1.00","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",70267,"G","T","9925.52","306.0","0.99","Nonsyn","gtc","Ttc","1579G>T","Val527Phe",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",70816,"A","G","1064.79","33.0","1.00","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",70816,"A","G","3380.35","107.0","0.99","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",70816,"A","G","8865.06","286.0","0.99","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",70816,"A","G","2619.49","87.0","0.97","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",70816,"A","G","3756.53","117.0","1.00","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",70816,"A","G","3653.15","113.0","1.00","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",70816,"A","G",{"v":928532,"d":"928,532"},"31.0","0.97","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",70816,"A","G","1447.21","44.0","0.98","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",70816,"A","G","9293.16","271.0","1.00","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",70816,"A","G","8620.32","253.0","1.00","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",70816,"A","G","3141.36","101.0","1.00","Nonsyn","aac","Gac","2128A>G","Asn710Asp",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",70838,"C","A","1102.19","34.0","1.00","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",70838,"C","A","3464.55","109.0","1.00","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",70838,"C","A","8981.38","291.0","0.98","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",70838,"C","A","2179.21","78.0","0.93","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",70838,"C","A","3370.02","108.0","0.98","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",70838,"C","A","3223.67","103.0","0.96","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",70838,"C","A",{"v":831804,"d":"831,804"},"26.0","1.00","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",70838,"C","A","1008.07","36.0","0.92","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",70838,"C","A","8796.81","266.0","0.99","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",70838,"C","A","8321.42","253.0","1.00","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",70838,"C","A","5136.33","161.0","0.98","Nonsyn","ccg","cAg","2150C>A","Pro717Gln",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",71551,"G","A","598.05","19.0","1.00","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",71551,"G","A","3886.12","126.0","0.95","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",71551,"G","A","5738.7","192.0","0.94","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",71551,"G","A","1227.92","48.0","0.86","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",71551,"G","A","2182.19","70.0","1.00","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",71551,"G","A","2247.9","71.0","0.99","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",71551,"G","A",{"v":872288,"d":"872,288"},"30.0","1.00","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",71551,"G","A","1437.78","48.0","1.00","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",71551,"G","A","4751.49","147.0","1.00","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",71551,"G","A","4669.69","147.0","0.99","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",71551,"G","A","2064.08","65.0","1.00","Nonsyn","ggt","Agt","2863G>A","Gly955Ser",null,"fig|83332.12.peg.72","Rv0064",null,"putative membrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",74161,"C","G",{"v":951856,"d":"951,856"},"32.0","1.00","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantLOW"]
["G01491","NC_000962",74161,"C","G","3542.01","109.0","0.99","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
["G01492","NC_000962",74161,"C","G","7723.88","250.0","0.99","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
["G01498","NC_000962",74161,"C","G","2214.03","77.0","0.94","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
[7011,"NC_000962",74161,"C","G","3631.17","117.0","1.00","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
[7739,"NC_000962",74161,"C","G","3540.8","111.0","1.00","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
[58,"NC_000962",74161,"C","G","2385.97","76.0","0.96","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
[64,"NC_000962",74161,"C","G","1398.5","46.0","0.98","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantLOW"]
["MP2","NC_000962",74161,"C","G","8929.59","260.0","1.00","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
["MP1","NC_000962",74161,"C","G","10196.7","300.0","1.00","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
[54,"NC_000962",74161,"C","G","7230.15","238.0","1.00","Nonsyn","aag","aaC","351G>C","Lys117Asn",null,"fig|83332.12.peg.75","Rv0066c","icd2","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","toxin VapC1 @ Toxin 1, PIN domain","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
["G01222","NC_000962",75940,"G","C",{"v":643494,"d":"643,494"},"22.0","0.96","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantMODERATE"]
["G01491","NC_000962",75940,"G","C","4600.66","145.0","1.00","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantMODERATE"]
["G01492","NC_000962",75940,"G","C","9894.86","313.0","1.00","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantMODERATE"]
["G01498","NC_000962",75940,"G","C","2469.74","80.0","0.96","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantMODERATE"]
[7011,"NC_000962",75940,"G","C","2518.91","84.0","1.00","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantMODERATE"]
[7739,"NC_000962",75940,"G","C","2973.52","93.0","0.99","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantMODERATE"]
[58,"NC_000962",75940,"G","C","1204.58","40.0","0.98","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantMODERATE"]
[64,"NC_000962",75940,"G","C","1882.28","60.0","0.97","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantLOW"]
["MP2","NC_000962",75940,"G","C","7552.81","218.0","1.00","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantMODERATE"]
["MP1","NC_000962",75940,"G","C","7997.21","234.0","1.00","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantMODIFIER"]
[54,"NC_000962",75940,"G","C","1810.25","59.0","0.98","Nonsyn","gtg","Ctg","640G>C","Val214Leu",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","missense_variantLOW"]
["G01222","NC_000962",76099,"C","A",{"v":787011,"d":"787,011"},"26.0","1.00","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantMODERATE"]
["G01491","NC_000962",76099,"C","A","4388.47","140.0","0.99","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantLOW"]
["G01492","NC_000962",76099,"C","A","8811.7","289.0","0.97","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantLOW"]
["G01498","NC_000962",76099,"C","A","2195.97","75.0","0.93","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantLOW"]
[7011,"NC_000962",76099,"C","A","3261.43","102.0","1.00","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantMODERATE"]
[7739,"NC_000962",76099,"C","A","3996.27","124.0","1.00","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantMODERATE"]
[58,"NC_000962",76099,"C","A",{"v":503788,"d":"503,788"},"17.0","1.00","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantLOW"]
[64,"NC_000962",76099,"C","A",{"v":501948,"d":"501,948"},"17.0","0.94","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantLOW"]
["MP2","NC_000962",76099,"C","A","7767.51","227.0","1.00","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantMODERATE"]
["MP1","NC_000962",76099,"C","A","7586.0","220.0","1.00","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantMODERATE"]
[54,"NC_000962",76099,"C","A","2747.54","86.0","1.00","Synon","cgg","Agg","799C>A","Arg267Arg",null,"fig|83332.12.peg.77","Rv0068",null,"Citronellol dehydrogenase","Transcriptional regulator, AcrR family","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","synonymous_variantLOW"]
["G01222","NC_000962",78103,"T","C",{"v":754757,"d":"754,757"},"25.0","1.00","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",78103,"T","C","4810.37","149.0","1.00","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",78103,"T","C","9296.24","296.0","1.00","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",78103,"T","C","3018.09","95.0","0.98","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",78103,"T","C","3364.86","107.0","0.99","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",78103,"T","C","3570.6","116.0","1.00","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",78103,"T","C","2099.58","67.0","1.00","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",78103,"T","C","3197.64","103.0","0.93","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",78103,"T","C","6828.62","202.0","1.00","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",78103,"T","C","8084.6","238.0","1.00","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",78103,"T","C","2752.66","89.0","0.96","Nonsyn","gag","gGg","794A>G","Glu265Gly",null,"fig|83332.12.peg.79","Rv0070c","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",80616,"C","G",{"v":789355,"d":"789,355"},"25.0","1.00",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
["G01491","NC_000962",80616,"C","G","3627.63","114.0","1.00",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
["G01492","NC_000962",80616,"C","G","7124.73","230.0","1.00",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
["G01498","NC_000962",80616,"C","G","1703.74","58.0","1.00",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
[7011,"NC_000962",80616,"C","G","3259.56","100.0","1.00",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
[7739,"NC_000962",80616,"C","G","3191.23","99.0","1.00",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
[58,"NC_000962",80616,"C","G","3378.01","106.0","0.98",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
[64,"NC_000962",80616,"C","G","3698.21","116.0","0.99",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
["MP2","NC_000962",80616,"C","G","8166.48","240.0","1.00",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
["MP1","NC_000962",80616,"C","G","8961.39","263.0","1.00",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
[54,"NC_000962",80616,"C","G","4831.12","150.0","0.99",{"$nulls":10},"hypothetical protein","ABC-type antimicrobial peptide transport system, permease component","intergenic_regionMODIFIER"]
["G01222","NC_000962",82619,"TGGGGGGT","TGGGGGGGT",{"v":740262,"d":"740,262"},"26.0","0.93","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
["G01491","NC_000962",82619,"TGGGGGGT","TGGGGGGGT","3234.36","108.0","0.92","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
["G01492","NC_000962",82619,"TGGGGGGT","TGGGGGGGT","7048.79","240.0","0.93","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
["G01498","NC_000962",82619,"TGGGGGGT","TGGGGGGGT","1267.46","46.0","0.87","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
[7011,"NC_000962",82619,"TGGGGGGT","TGGGGGGGT","1078.98","46.0","0.73","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
[7739,"NC_000962",82619,"TGGGGGGT","TGGGGGGGT","1551.53","59.0","0.84","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
[58,"NC_000962",82619,"TGGGGGGT","TGGGGGGGT",{"v":173725,"d":"173,725"},"6.0","0.86","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
[64,"NC_000962",82619,"TGGGGGGT","TGGGGGGGT",{"v":247425,"d":"247,425"},"12.0","0.67","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
["MP2","NC_000962",82619,"TGGGGGGT","TGGGGGGGT","6867.15","213.0","0.95","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
["MP1","NC_000962",82619,"TGGGGGGT","TGGGGGGGT","6119.56","194.0","0.96","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
[54,"NC_000962",82619,"TGGGGGGT","TGGGGGGGT",{"v":393598,"d":"393,598"},"15.0","0.83","Insertion","gtggggggtctg","gTGGGGGGGTctg","951_952insG","Gly317_Leu318fs","yes","fig|83332.12.peg.84","Rv0073",null,"ABC transporter, ATP-binding protein","ABC-type antimicrobial peptide transport system, permease component","Xaa-Pro dipeptidase (EC 3.4.13.9)","frameshift_variantHIGH"]
["G01222","NC_000962",86864,"A","G",{"v":354402,"d":"354,402"},"12.0","1.00","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",86864,"A","G","5528.95","172.0","0.99","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",86864,"A","G","8174.06","263.0","0.99","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",86864,"A","G","1621.28","54.0","1.00","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",86864,"A","G","2038.4","64.0","0.98","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",86864,"A","G","2638.78","81.0","0.99","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",86864,"A","G","2371.91","77.0","0.96","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",86864,"A","G","2554.72","83.0","0.95","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",86864,"A","G","6456.08","188.0","1.00","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",86864,"A","G","6522.81","188.0","1.00","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",86864,"A","G","10346.6","314.0","0.99","Nonsyn","atc","Gtc","337A>G","Ile113Val",null,"fig|83332.12.peg.89","Rv0078",null,"Transcriptional regulator, AcrR family","Hydrolase, alpha/beta fold family","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",89200,"G","T",{"v":813187,"d":"813,187"},"25.0","1.00","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
["G01491","NC_000962",89200,"G","T","6207.88","198.0","1.00","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
["G01492","NC_000962",89200,"G","T","11302.1","372.0","0.99","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
["G01498","NC_000962",89200,"G","T","2333.04","78.0","0.99","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
[7011,"NC_000962",89200,"G","T","2884.39","95.0","1.00","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
[7739,"NC_000962",89200,"G","T","2761.51","95.0","1.00","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
[58,"NC_000962",89200,"G","T",{"v":627609,"d":"627,609"},"7.0","0.64","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
[64,"NC_000962",89200,"G","T",{"v":299638,"d":"299,638"},"14.0","0.88","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
["MP2","NC_000962",89200,"G","T","6619.94","199.0","1.00","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
["MP1","NC_000962",89200,"G","T","6584.74","200.0","1.00","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
[54,"NC_000962",89200,"G","T",{"v":217866,"d":"217,866"},"8.0","1.00","Nonsyn","ggg","gTg","179G>T","Gly60Val",null,"fig|83332.12.peg.92","Rv0080",null,"Putative DNA-binding protein","Ribosome hibernation promoting factor Hpf","Transcriptional regulator, ArsR family","missense_variantMODERATE"]
["G01222","NC_000962",89535,"C","T",{"v":765983,"d":"765,983"},"24.0","1.00",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
["G01491","NC_000962",89535,"C","T","4661.73","143.0","0.99",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
["G01492","NC_000962",89535,"C","T","10729.9","347.0","0.98",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
["G01498","NC_000962",89535,"C","T","2710.09","88.0","0.98",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
[7011,"NC_000962",89535,"C","T","3408.06","106.0","1.00",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
[7739,"NC_000962",89535,"C","T","3802.48","118.0","0.99",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
[58,"NC_000962",89535,"C","T","7606.41","226.0","1.00",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionMODIFIER"]
[64,"NC_000962",89535,"C","T","4407.55","133.0","0.99",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
["MP2","NC_000962",89535,"C","T","7716.24","224.0","1.00",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
["MP1","NC_000962",89535,"C","T","7347.53","214.0","1.00",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
[54,"NC_000962",89535,"C","T","15383.9","463.0","1.00",{"$nulls":10},"Putative DNA-binding protein","Transcriptional regulator, ArsR family","intergenic_regionLOW"]
["G01222","NC_000962",91071,"T","C",{"v":944323,"d":"944,323"},"32.0","1.00","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
["G01491","NC_000962",91071,"T","C","8905.59","276.0","1.00","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
["G01492","NC_000962",91071,"T","C","11344.2","370.0","0.99","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
["G01498","NC_000962",91071,"T","C","3688.12","122.0","0.99","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
[7011,"NC_000962",91071,"T","C","2924.72","96.0","1.00","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
[7739,"NC_000962",91071,"T","C","2093.23","72.0","1.00","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
[58,"NC_000962",91071,"T","C","1547.61","52.0","0.95","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
[64,"NC_000962",91071,"T","C","2221.25","71.0","1.00","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
["MP2","NC_000962",91071,"T","C","4272.41","128.0","0.99","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
["MP1","NC_000962",91071,"T","C","5191.72","155.0","1.00","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
[54,"NC_000962",91071,"T","C","1420.38","48.0","1.00","Synon","att","atC","672T>C","Ile224Ile",null,"fig|83332.12.peg.95","Rv0083",null,"Hydrogenase-4 component B","Formate hydrogenlyase subunit 7-like protein","Hydrogenase-4 component C","synonymous_variantLOW"]
["G01222","NC_000962",97085,"A","T",{"v":885444,"d":"885,444"},"28.0","0.97","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variant"]
["G01491","NC_000962",97085,"A","T","4608.1","143.0","0.97","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variantHIGH"]
["G01492","NC_000962",97085,"A","T","12806.9","414.0","0.98","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variant"]
["G01498","NC_000962",97085,"A","T","2452.94","89.0","0.94","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variantHIGH"]
[7011,"NC_000962",97085,"A","T","3269.58","104.0","0.99","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",97085,"A","T","3509.15","117.0","0.99","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",97085,"A","T","1236.54","42.0","1.00","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",97085,"A","T","1013.66","33.0","1.00","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",97085,"A","T","8296.16","243.0","1.00","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",97085,"A","T","8428.48","253.0","1.00","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variant"]
[54,"NC_000962",97085,"A","T","4604.16","158.0","0.99","Nonsyn","aaa","aaT","63A>T","Lys21Asn",null,"fig|83332.12.peg.100","Rv0088",null,"hypothetical protein","Hydrogenase-4 component G","hypothetical protein","missense_variantHIGH"]
["G01222","NC_000962",97696,"T","C",{"v":927448,"d":"927,448"},"28.0","1.00","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",97696,"T","C","3343.87","107.0","0.98","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",97696,"T","C","11079.8","354.0","0.99","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",97696,"T","C","2364.27","78.0","0.95","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",97696,"T","C","3519.25","116.0","1.00","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",97696,"T","C","4355.97","134.0","1.00","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",97696,"T","C","4737.25","144.0","1.00","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",97696,"T","C","2835.05","86.0","0.98","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",97696,"T","C","8471.4","245.0","1.00","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",97696,"T","C","8364.88","247.0","1.00","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",97696,"T","C","8199.39","261.0","0.99","Nonsyn","aaa","aGa","71A>G","Lys24Arg",null,"fig|83332.12.peg.101",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",100589,"A","G",{"v":902858,"d":"902,858"},"29.0","1.00",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODIFIER"]
["G01491","NC_000962",100589,"A","G","4665.8","144.0","1.00",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODIFIER"]
["G01492","NC_000962",100589,"A","G","11931.9","382.0","0.99",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODIFIER"]
["G01498","NC_000962",100589,"A","G","2283.38","75.0","1.00",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODIFIER"]
[7011,"NC_000962",100589,"A","G","2495.0","81.0","1.00",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODIFIER"]
[7739,"NC_000962",100589,"A","G","2056.99","68.0","1.00",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODIFIER"]
[58,"NC_000962",100589,"A","G",{"v":469527,"d":"469,527"},"18.0","0.90",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODERATE"]
[64,"NC_000962",100589,"A","G",{"v":558241,"d":"558,241"},"19.0","0.90",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODERATE"]
["MP2","NC_000962",100589,"A","G","7662.13","224.0","1.00",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODIFIER"]
["MP1","NC_000962",100589,"A","G","7951.98","235.0","1.00",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODIFIER"]
[54,"NC_000962",100589,"A","G","1015.18","36.0","0.95",{"$nulls":10},"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","intergenic_regionMODERATE"]
["G01222","NC_000962",101299,"G","A",{"v":942925,"d":"942,925"},"31.0","1.00","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
["G01491","NC_000962",101299,"G","A","4957.27","159.0","0.98","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
["G01492","NC_000962",101299,"G","A","8925.46","289.0","0.97","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
["G01498","NC_000962",101299,"G","A","1819.52","60.0","0.94","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
[7011,"NC_000962",101299,"G","A","3148.41","100.0","1.00","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
[7739,"NC_000962",101299,"G","A","2538.61","83.0","0.99","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
[58,"NC_000962",101299,"G","A",{"v":783624,"d":"783,624"},"25.0","1.00","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
[64,"NC_000962",101299,"G","A","1757.89","56.0","1.00","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
["MP2","NC_000962",101299,"G","A","6799.46","204.0","0.99","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
["MP1","NC_000962",101299,"G","A","8216.26","254.0","1.00","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
[54,"NC_000962",101299,"G","A",{"v":808888,"d":"808,888"},"28.0","1.00","Synon","gcg","gcA","582G>A","Ala194Ala",null,"fig|83332.12.peg.105","Rv0092","ctpA","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Integral membrane protein","synonymous_variantLOW"]
["G01222","NC_000962",103600,"A","G","1310.15","43.0","1.00","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantLOW"]
["G01491","NC_000962",103600,"A","G","5773.51","178.0","0.99","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantLOW"]
["G01492","NC_000962",103600,"A","G","10954.2","355.0","0.99","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantLOW"]
["G01498","NC_000962",103600,"A","G","2657.69","85.0","1.00","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantLOW"]
[7011,"NC_000962",103600,"A","G","3187.49","102.0","0.99","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantLOW"]
[7739,"NC_000962",103600,"A","G","2606.87","84.0","1.00","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantLOW"]
[58,"NC_000962",103600,"A","G",{"v":665902,"d":"665,902"},"22.0","1.00","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantMODERATE"]
[64,"NC_000962",103600,"A","G",{"v":245531,"d":"245,531"},"9.0","0.90","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantMODERATE"]
["MP2","NC_000962",103600,"A","G","8506.24","256.0","1.00","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantLOW"]
["MP1","NC_000962",103600,"A","G","7699.43","232.0","1.00","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantLOW"]
[54,"NC_000962",103600,"A","G",{"v":317643,"d":"317,643"},"10.0","0.91","Nonsyn","tgc","Cgc","64T>C","Cys22Arg",null,"fig|83332.12.peg.106","Rv0093c",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","13E12 repeat family protein","missense_variantMODERATE"]
["G01222","NC_000962",104824,"C","A",{"v":710065,"d":"710,065"},"25.0","1.00","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01491","NC_000962",104824,"C","A","3910.84","123.0","0.99","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01492","NC_000962",104824,"C","A","9270.77","302.0","0.99","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01498","NC_000962",104824,"C","A","1906.58","68.0","1.00","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[7011,"NC_000962",104824,"C","A","2347.52","103.0","1.00","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[7739,"NC_000962",104824,"C","A","1877.66","79.0","1.00","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[58,"NC_000962",104824,"C","A",{"v":577668,"d":"577,668"},"26.0","1.00","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[64,"NC_000962",104824,"C","A","741.73","31.0","0.97","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["MP2","NC_000962",104824,"C","A","6613.08","203.0","1.00","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["MP1","NC_000962",104824,"C","A","6383.11","198.0","1.00","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[54,"NC_000962",104824,"C","A",{"v":140885,"d":"140,885"},"7.0","1.00","Nonsyn","agc","aTc","278G>T","Ser93Ile",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01222","NC_000962",104838,"T","G","804.12","29.0","1.00","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01491","NC_000962",104838,"T","G","4155.46","134.0","0.98","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01492","NC_000962",104838,"T","G","9531.18","312.0","0.97","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01498","NC_000962",104838,"T","G","1979.09","66.0","0.99","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[7011,"NC_000962",104838,"T","G","1764.42","89.0","0.99","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[7739,"NC_000962",104838,"T","G","1620.25","83.0","1.00","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[58,"NC_000962",104838,"T","G","2243.3","80.0","0.96","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[64,"NC_000962",104838,"T","G","2454.86","100.0","0.88","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["MP2","NC_000962",104838,"T","G","6440.81","195.0","1.00","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["MP1","NC_000962",104838,"T","G","6625.27","203.0","1.00","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[54,"NC_000962",104838,"T","G",{"v":795466,"d":"795,466"},"31.0","0.94","Nonsyn","gaa","gaC","264A>C","Glu88Asp",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01222","NC_000962",105045,"G","C","1399.39","44.0","1.00","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01491","NC_000962",105045,"G","C","5251.42","162.0","1.00","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01492","NC_000962",105045,"G","C","11876.3","393.0","0.97","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01498","NC_000962",105045,"G","C","2416.74","83.0","1.00","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[7011,"NC_000962",105045,"G","C","1558.63","109.0","1.00","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[7739,"NC_000962",105045,"G","C","1767.55","121.0","0.99","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[58,"NC_000962",105045,"G","C","5935.11","206.0","1.00","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[64,"NC_000962",105045,"G","C","5516.82","199.0","0.97","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["MP2","NC_000962",105045,"G","C","7838.26","237.0","1.00","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["MP1","NC_000962",105045,"G","C","6983.43","209.0","1.00","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
[54,"NC_000962",105045,"G","C","9359.74","337.0","0.98","Nonsyn","gac","gaG","57C>G","AsMP19Glu",null,"fig|83332.12.peg.109","Rv0095c",null,"13E12 repeat family protein","hypothetical protein","PPE family protein, PPW subgroup ","missense_variantMODERATE"]
["G01222","NC_000962",116000,"T","G",{"v":412905,"d":"412,905"},"13.0","1.00","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantMODERATE"]
["G01491","NC_000962",116000,"T","G","5773.82","181.0","1.00","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
["G01492","NC_000962",116000,"T","G","10902.5","347.0","1.00","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantMODERATE"]
["G01498","NC_000962",116000,"T","G","2367.77","79.0","1.00","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
[7011,"NC_000962",116000,"T","G","2317.57","79.0","1.00","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantMODERATE"]
[7739,"NC_000962",116000,"T","G","2400.3","81.0","1.00","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantMODERATE"]
[58,"NC_000962",116000,"T","G","1134.96","43.0","0.90","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
[64,"NC_000962",116000,"T","G","2043.15","75.0","0.86","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
["MP2","NC_000962",116000,"T","G","6210.69","186.0","0.99","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantMODERATE"]
["MP1","NC_000962",116000,"T","G","6749.47","206.0","1.00","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantMODERATE"]
[54,"NC_000962",116000,"T","G","1466.65","58.0","0.84","Synon","gtt","gtG","6000T>G","Val2000Val",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
["G01222","NC_000962",116388,"C","A",{"v":593173,"d":"593,173"},"21.0","1.00","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
["G01491","NC_000962",116388,"C","A","4625.53","149.0","0.97","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
["G01492","NC_000962",116388,"C","A","10760.2","356.0","0.98","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
["G01498","NC_000962",116388,"C","A","2420.5","82.0","0.98","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
[7011,"NC_000962",116388,"C","A","2313.9","78.0","0.97","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
[7739,"NC_000962",116388,"C","A","3349.65","116.0","1.00","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
[58,"NC_000962",116388,"C","A","7460.23","233.0","0.98","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
[64,"NC_000962",116388,"C","A","5821.61","186.0","0.97","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
["MP2","NC_000962",116388,"C","A","7225.14","223.0","1.00","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
["MP1","NC_000962",116388,"C","A","7534.89","232.0","1.00","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
[54,"NC_000962",116388,"C","A","13851.6","434.0","0.99","Synon","cgg","Agg","6388C>A","Arg2130Arg",null,"fig|83332.12.peg.115","Rv0101","nrp","Nonribosomal peptide synthetase in FadD10 cluster","pp-binding family protein Rv0100","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","synonymous_variantLOW"]
["G01222","NC_000962",122109,"A","G","469.95","17.0","1.00","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",122109,"A","G","3931.54","121.0","1.00","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",122109,"A","G","11194.4","362.0","0.99","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",122109,"A","G","1904.42","63.0","0.98","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",122109,"A","G","2517.8","92.0","0.96","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",122109,"A","G","2687.01","96.0","0.98","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",122109,"A","G","2468.05","79.0","0.96","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",122109,"A","G","3612.86","113.0","0.99","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",122109,"A","G","6979.62","207.0","1.00","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",122109,"A","G","8322.54","248.0","1.00","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",122109,"A","G","1398.67","44.0","1.00","Nonsyn","ttg","tCg","50T>C","Leu17Ser",null,"fig|83332.12.peg.117","Rv0103c","ctpB","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Copper resistance protein CopD / Cytochrome c oxidase caa3-type assembly factor CtaG_BS (unrelated to Cox11-CtaG family)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",123520,"T","C",{"v":477267,"d":"477,267"},"15.0","1.00","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
["G01491","NC_000962",123520,"T","C","5078.41","155.0","0.99","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
["G01492","NC_000962",123520,"T","C","11996.9","387.0","0.99","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
["G01498","NC_000962",123520,"T","C","3369.69","109.0","0.98","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
[7011,"NC_000962",123520,"T","C","3290.63","102.0","1.00","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
[7739,"NC_000962",123520,"T","C","3215.65","104.0","0.99","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
[58,"NC_000962",123520,"T","C","1488.72","50.0","1.00","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
[64,"NC_000962",123520,"T","C","1625.75","53.0","0.95","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
["MP2","NC_000962",123520,"T","C","9399.98","276.0","0.99","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
["MP1","NC_000962",123520,"T","C","10276.1","300.0","1.00","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
[54,"NC_000962",123520,"T","C","2620.15","84.0","0.99","Nonsyn","tat","Cat","1177T>C","Tyr393His",null,"fig|83332.12.peg.118","Rv0104",null,"hypothetical protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","missense_variantMODERATE"]
["G01222","NC_000962",123842,"C","T",{"v":983506,"d":"983,506"},"30.0","1.00",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
["G01491","NC_000962",123842,"C","T","3723.14","118.0","0.99",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
["G01492","NC_000962",123842,"C","T","7979.29","261.0","0.98",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
["G01498","NC_000962",123842,"C","T","1755.63","59.0","1.00",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
[7011,"NC_000962",123842,"C","T","4242.31","132.0","1.00",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
[7739,"NC_000962",123842,"C","T","2837.54","88.0","1.00",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
[58,"NC_000962",123842,"C","T","5705.3","176.0","0.99",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
[64,"NC_000962",123842,"C","T","4992.08","155.0","1.00",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
["MP2","NC_000962",123842,"C","T","9403.29","274.0","1.00",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
["MP1","NC_000962",123842,"C","T","10379.0","302.0","1.00",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
[54,"NC_000962",123842,"C","T","5626.72","172.0","0.99",{"$nulls":10},"hypothetical protein","LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent","intergenic_regionMODIFIER"]
["G01222","NC_000962",125830,"GAA","GAAA",{"v":591597,"d":"591,597"},"20.0","1.00","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
["G01491","NC_000962",125830,"GAA","GAAA","4727.41","155.0","0.95","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
["G01492","NC_000962",125830,"GAA","GAAA","9636.39","329.0","0.93","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
["G01498","NC_000962",125830,"GAA","GAAA","2888.77","100.0","0.91","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
[7011,"NC_000962",125830,"GAA","GAAA","2738.43","98.0","0.88","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
[7739,"NC_000962",125830,"GAA","GAAA","2294.8","83.0","0.87","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
[58,"NC_000962",125830,"GAA","GAAA","821.92","29.0","0.91","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
[64,"NC_000962",125830,"GAA","GAAA","780.66","25.0","0.89","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
["MP2","NC_000962",125830,"GAA","GAAA","6035.38","189.0","0.93","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
["MP1","NC_000962",125830,"GAA","GAAA","6394.84","194.0","0.93","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
[54,"NC_000962",125830,"GAA","GAAA","2848.39","91.0","0.93","Insertion","ttttcg","ttTTTCg","4709_4710insT","Phe1570_Ser1571fs","yes","fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","frameshift_variantHIGH"]
["G01222","NC_000962",126103,"C","T",{"v":579159,"d":"579,159"},"19.0","1.00","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",126103,"C","T","5013.99","160.0","0.97","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",126103,"C","T","8301.36","274.0","0.96","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",126103,"C","T","1756.45","62.0","0.91","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",126103,"C","T","2801.4","97.0","0.98","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",126103,"C","T","2874.51","94.0","0.97","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",126103,"C","T",{"v":451099,"d":"451,099"},"16.0","0.94","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",126103,"C","T",{"v":560101,"d":"560,101"},"19.0","1.00","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",126103,"C","T","7128.59","224.0","0.98","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",126103,"C","T","6349.32","194.0","0.98","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",126103,"C","T","2210.78","73.0","0.97","Nonsyn","ggg","gAg","4439G>A","Gly1480Glu",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",126563,"C","A",{"v":502622,"d":"502,622"},"19.0","0.95","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",126563,"C","A","4250.67","138.0","0.99","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",126563,"C","A","6503.63","214.0","0.98","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",126563,"C","A","2088.98","67.0","0.96","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",126563,"C","A","2990.41","93.0","0.99","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",126563,"C","A","2995.1","98.0","1.00","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",126563,"C","A","1466.92","47.0","1.00","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",126563,"C","A","2808.33","88.0","0.98","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",126563,"C","A","6625.55","197.0","0.99","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",126563,"C","A","6264.7","185.0","1.00","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",126563,"C","A","2517.51","81.0","1.00","Nonsyn","gcg","Tcg","3979G>T","Ala1327Ser",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",126803,"A","G",{"v":669172,"d":"669,172"},"22.0","1.00","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",126803,"A","G","7022.14","223.0","1.00","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",126803,"A","G","11762.6","387.0","0.99","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",126803,"A","G","3011.45","100.0","1.00","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",126803,"A","G","2647.39","103.0","0.94","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",126803,"A","G","2505.28","96.0","0.98","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",126803,"A","G","3159.92","106.0","1.00","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",126803,"A","G","3070.61","104.0","0.94","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",126803,"A","G","7718.54","227.0","1.00","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",126803,"A","G","7108.69","212.0","0.98","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",126803,"A","G","8342.13","275.0","0.97","Nonsyn","tct","Cct","3739T>C","Ser1247Pro",null,"fig|83332.12.peg.121","Rv0107c","ctpI","Probable cation-transporting ATPase I (EC 3.6.3.-)","Metal chaperone, involved in Zn homeostasis","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",131600,"C","T","1362.96","43.0","1.00","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
["G01491","NC_000962",131600,"C","T","5709.43","174.0","0.99","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
["G01492","NC_000962",131600,"C","T","11781.4","377.0","0.97","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
["G01498","NC_000962",131600,"C","T","4076.07","137.0","0.94","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
[7011,"NC_000962",131600,"C","T","3270.16","101.0","0.99","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
[7739,"NC_000962",131600,"C","T","3012.06","96.0","0.96","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
[58,"NC_000962",131600,"C","T","1893.49","61.0","0.97","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
[64,"NC_000962",131600,"C","T","1439.5","46.0","1.00","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
["MP2","NC_000962",131600,"C","T","6938.59","201.0","1.00","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
["MP1","NC_000962",131600,"C","T","6724.15","198.0","1.00","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
[54,"NC_000962",131600,"C","T","6945.78","213.0","1.00","Synon","cac","caT","219C>T","His73His",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","synonymous_variantLOW"]
["G01222","NC_000962",132325,"G","A",{"v":442959,"d":"442,959"},"17.0","1.00","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["G01491","NC_000962",132325,"G","A","4265.96","140.0","0.99","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["G01492","NC_000962",132325,"G","A","6834.14","225.0","0.97","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["G01498","NC_000962",132325,"G","A","1730.21","59.0","0.94","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
[7011,"NC_000962",132325,"G","A","1398.66","69.0","0.96","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantHIGH"]
[7739,"NC_000962",132325,"G","A","1303.09","58.0","0.98","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantHIGH"]
[58,"NC_000962",132325,"G","A","351.52","14.0","0.82","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
[64,"NC_000962",132325,"G","A",{"v":157179,"d":"157,179"},"20.0","0.54","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["MP2","NC_000962",132325,"G","A","3372.59","105.0","1.00","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["MP1","NC_000962",132325,"G","A","1827.86","56.0","1.00","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
[54,"NC_000962",132325,"G","A","1411.01","57.0","0.95","Nonsyn","ggc","gAc","944G>A","Gly315Asp",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["G01222","NC_000962",132417,"C","G",{"v":343891,"d":"343,891"},"11.0","1.00","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["G01491","NC_000962",132417,"C","G","1674.2","56.0","0.97","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["G01492","NC_000962",132417,"C","G","3683.25","120.0","0.98","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantHIGH"]
["G01498","NC_000962",132417,"C","G","1150.94","38.0","1.00","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
[7011,"NC_000962",132417,"C","G","2079.49","68.0","1.00","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODIFIER"]
[7739,"NC_000962",132417,"C","G","2349.55","75.0","1.00","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODIFIER"]
[58,"NC_000962",132417,"C","G",{"v":876611,"d":"876,611"},"29.0","1.00","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
[64,"NC_000962",132417,"C","G","1470.92","47.0","1.00","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["MP2","NC_000962",132417,"C","G","2407.26","78.0","1.00","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["MP1","NC_000962",132417,"C","G","1456.58","49.0","1.00","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
[54,"NC_000962",132417,"C","G","2775.5","92.0","1.00","Nonsyn","cgc","Ggc","1036C>G","Arg346Gly",null,"fig|83332.12.peg.123","Rv0109","PE_PGRS1","PE_PGRS family protein ","hypothetical protein","FIG056164: rhomboid family serine protease","missense_variantMODERATE"]
["G01222","NC_000962",133839,"C","T",{"v":924493,"d":"924,493"},"29.0","1.00",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",133839,"C","T","5256.47","172.0","0.99",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",133839,"C","T","10223.9","325.0","0.98",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",133839,"C","T","2216.16","70.0","1.00",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",133839,"C","T","2781.74","91.0","1.00",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",133839,"C","T","2901.8","90.0","1.00",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
[58,"NC_000962",133839,"C","T","7602.88","223.0","1.00",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
[64,"NC_000962",133839,"C","T","5278.12","155.0","1.00",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",133839,"C","T","7644.9","226.0","0.99",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",133839,"C","T","7336.91","221.0","1.00",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
[54,"NC_000962",133839,"C","T","18336.2","569.0","1.00",{"$nulls":10},"FIG056164: rhomboid family serine protease","Acyltransferase family protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",135928,"G","A","1254.3","40.0","1.00","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
["G01491","NC_000962",135928,"G","A","3165.9","98.0","0.99","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
["G01492","NC_000962",135928,"G","A","10029.2","321.0","0.97","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
["G01498","NC_000962",135928,"G","A","2240.68","75.0","0.99","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
[7011,"NC_000962",135928,"G","A","3447.2","107.0","0.99","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
[7739,"NC_000962",135928,"G","A","3524.65","113.0","0.97","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
[58,"NC_000962",135928,"G","A","3705.58","115.0","0.98","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
[64,"NC_000962",135928,"G","A","3201.48","99.0","0.99","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
["MP2","NC_000962",135928,"G","A","9058.14","264.0","1.00","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
["MP1","NC_000962",135928,"G","A","9023.43","265.0","1.00","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
[54,"NC_000962",135928,"G","A","10427.1","330.0","0.99","Nonsyn","agt","aAt","1937G>A","Ser646Asn",null,"fig|83332.12.peg.125","Rv0111",null,"Acyltransferase family protein","FIG056164: rhomboid family serine protease","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","missense_variantMODERATE"]
["G01222","NC_000962",136595,"C","T","1445.33","46.0","1.00","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
["G01491","NC_000962",136595,"C","T","1685.49","57.0","0.97","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
["G01492","NC_000962",136595,"C","T","7114.85","231.0","0.99","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
["G01498","NC_000962",136595,"C","T","1749.13","56.0","1.00","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
[7011,"NC_000962",136595,"C","T","3132.88","96.0","1.00","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
[7739,"NC_000962",136595,"C","T","3434.42","105.0","0.99","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
[58,"NC_000962",136595,"C","T",{"v":573551,"d":"573,551"},"19.0","1.00","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
[64,"NC_000962",136595,"C","T",{"v":427121,"d":"427,121"},"18.0","1.00","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
["MP2","NC_000962",136595,"C","T","8244.4","240.0","1.00","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
["MP1","NC_000962",136595,"C","T","8709.24","260.0","1.00","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
[54,"NC_000962",136595,"C","T","966.8","34.0","1.00","Nonsyn","cgt","Tgt","307C>T","Arg103Cys",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","missense_variantMODERATE"]
["G01222","NC_000962",137185,"G","A","1747.0","54.0","1.00","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
["G01491","NC_000962",137185,"G","A","2772.14","85.0","0.98","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
["G01492","NC_000962",137185,"G","A","7187.4","222.0","1.00","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
["G01498","NC_000962",137185,"G","A","2385.47","73.0","1.00","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
[7011,"NC_000962",137185,"G","A","3586.3","109.0","1.00","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
[7739,"NC_000962",137185,"G","A","3962.8","124.0","1.00","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
[58,"NC_000962",137185,"G","A","11607.3","340.0","1.00","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
[64,"NC_000962",137185,"G","A","6024.29","183.0","1.00","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
["MP2","NC_000962",137185,"G","A","9761.6","282.0","1.00","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
["MP1","NC_000962",137185,"G","A","9167.3","268.0","1.00","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantLOW"]
[54,"NC_000962",137185,"G","A","11717.8","355.0","0.99","Synon","cag","caA","897G>A","Gln299Gln",null,"fig|83332.12.peg.126","Rv0112","gca","GDP-mannose 4,6-dehydratase (EC 4.2.1.47)","Acyltransferase family protein","D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28)","synonymous_variantMODERATE"]
["G01222","NC_000962",139756,"T","C",{"v":953643,"d":"953,643"},"30.0","1.00",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",139756,"T","C","3833.89","119.0","1.00",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",139756,"T","C","9042.56","293.0","0.99",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",139756,"T","C","1672.07","54.0","1.00",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",139756,"T","C","2790.6","89.0","0.99",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",139756,"T","C","3053.92","96.0","1.00",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionMODIFIER"]
[58,"NC_000962",139756,"T","C",{"v":516626,"d":"516,626"},"20.0","0.91",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",139756,"T","C",{"v":543897,"d":"543,897"},"27.0","0.69",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionLOW"]
["MP2","NC_000962",139756,"T","C","9853.16","287.0","1.00",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",139756,"T","C","8590.85","250.0","1.00",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",139756,"T","C","2249.27","78.0","0.92",{"$nulls":10},"D-glycero-alpha-D-manno-heptose 7-phosphate kinase (EC 2.7.1.168)","hypothetical protein","intergenic_regionLOW"]
["G01222","NC_000962",141014,"T","G",{"v":672094,"d":"672,094"},"21.0","0.95","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
["G01491","NC_000962",141014,"T","G","4064.08","132.0","0.99","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
["G01492","NC_000962",141014,"T","G","8821.23","296.0","0.96","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
["G01498","NC_000962",141014,"T","G","2532.59","81.0","1.00","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
[7011,"NC_000962",141014,"T","G","2588.59","88.0","0.99","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
[7739,"NC_000962",141014,"T","G","2205.81","75.0","0.99","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
[58,"NC_000962",141014,"T","G",{"v":737612,"d":"737,612"},"26.0","1.00","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
[64,"NC_000962",141014,"T","G",{"v":532016,"d":"532,016"},"18.0","1.00","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
["MP2","NC_000962",141014,"T","G","8021.78","235.0","0.99","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
["MP1","NC_000962",141014,"T","G","8644.02","255.0","1.00","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
[54,"NC_000962",141014,"T","G","2116.06","78.0","1.00","Synon","cga","cgC","9A>C","Arg3Arg",null,"fig|83332.12.peg.131","Rv0116c",null,"L,D-transpeptidase","hypothetical protein","Transcriptional regulator OxyS, LysR family","synonymous_variantLOW"]
["G01222","NC_000962",143207,"T","C","1168.04","37.0","1.00","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
["G01491","NC_000962",143207,"T","C","6321.02","197.0","1.00","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
["G01492","NC_000962",143207,"T","C","8835.2","289.0","1.00","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
["G01498","NC_000962",143207,"T","C","1308.04","42.0","1.00","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
[7011,"NC_000962",143207,"T","C","3513.78","108.0","1.00","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
[7739,"NC_000962",143207,"T","C","3224.6","101.0","1.00","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
[58,"NC_000962",143207,"T","C",{"v":125733,"d":"125,733"},"6.0","1.00","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
[64,"NC_000962",143207,"T","C","1009.33","31.0","0.97","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
["MP2","NC_000962",143207,"T","C","7827.96","229.0","1.00","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
["MP1","NC_000962",143207,"T","C","7239.53","215.0","1.00","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
[54,"NC_000962",143207,"T","C","1051.92","38.0","0.86","Nonsyn","agc","Ggc","640A>G","Ser214Gly",null,"fig|83332.12.peg.133","Rv0118c","oxcA","Oxalyl-CoA decarboxylase (EC 4.1.1.8)","Transcriptional regulator OxyS, LysR family","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","missense_variantMODERATE"]
["G01222","NC_000962",146087,"T","C",{"v":739079,"d":"739,079"},"24.0","1.00","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",146087,"T","C","5025.14","157.0","1.00","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",146087,"T","C","8659.87","284.0","1.00","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",146087,"T","C","2701.36","90.0","1.00","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",146087,"T","C","2981.18","94.0","1.00","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",146087,"T","C","2403.3","77.0","0.99","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",146087,"T","C","2607.72","81.0","1.00","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",146087,"T","C","1968.18","63.0","1.00","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",146087,"T","C","6087.81","179.0","0.99","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",146087,"T","C","7165.3","211.0","1.00","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",146087,"T","C","5411.91","168.0","0.99","Nonsyn","aat","aGt","1685A>G","Asn562Ser",null,"fig|83332.12.peg.135","Rv0120c","fusA2","Elongation factor G-like protein TM_1651","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD7","hypothetical protein","missense_variantLOW"]
["G01222","NC_000962",147812,"GCC","GC",{"v":712204,"d":"712,204"},"24.0","0.86","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",147812,"GCC","GC","3601.65","130.0","0.89","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",147812,"GCC","GC","9465.24","334.0","0.90","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",147812,"GCC","GC","4144.35","146.0","0.93","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",147812,"GCC","GC","2930.69","102.0","0.90","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",147812,"GCC","GC","2034.04","75.0","0.88","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
[58,"NC_000962",147812,"GCC","GC","1041.74","35.0","0.97","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",147812,"GCC","GC",{"v":997425,"d":"997,425"},"32.0","0.97","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",147812,"GCC","GC","5797.3","187.0","0.91","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",147812,"GCC","GC","6054.29","188.0","0.91","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",147812,"GCC","GC","3659.42","118.0","0.91","Deletion",{"$nulls":9},"Elongation factor G-like protein TM_1651","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",148102,"C","T",{"v":743529,"d":"743,529"},"23.0","1.00","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantLOW"]
["G01491","NC_000962",148102,"C","T","6845.88","215.0","0.98","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",148102,"C","T","12856.0","434.0","0.97","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",148102,"C","T","4625.26","154.0","0.96","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",148102,"C","T","2660.43","83.0","1.00","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",148102,"C","T","2845.87","88.0","1.00","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",148102,"C","T","1491.41","45.0","1.00","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",148102,"C","T",{"v":962272,"d":"962,272"},"30.0","0.94","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",148102,"C","T","6732.25","202.0","1.00","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",148102,"C","T","6635.85","197.0","0.99","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",148102,"C","T","1130.53","38.0","1.00","Nonsyn","gac","Aac","241G>A","Asp81Asn",null,"fig|83332.12.peg.136","Rv0121c",null,"hypothetical protein","Elongation factor G-like protein TM_1651","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",149100,"A","C",{"v":650799,"d":"650,799"},"21.0","1.00","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",149100,"A","C","4388.05","146.0","0.97","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",149100,"A","C","16855.3","552.0","0.99","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",149100,"A","C","7195.5","243.0","0.96","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",149100,"A","C","2327.25","84.0","0.98","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",149100,"A","C","3067.89","101.0","0.98","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",149100,"A","C",{"v":298519,"d":"298,519"},"9.0","1.00","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",149100,"A","C",{"v":216158,"d":"216,158"},"11.0","0.79","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",149100,"A","C","7215.59","209.0","1.00","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",149100,"A","C","7286.43","215.0","1.00","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",149100,"A","C",{"v":371057,"d":"371,057"},"14.0","0.88","Nonsyn","aag","aCg","245A>C","Lys82Thr",null,"fig|83332.12.peg.139","Rv0123",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",151597,"T","C","1176.57","36.0","1.00","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
["G01491","NC_000962",151597,"T","C","4008.41","133.0","0.94","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
["G01492","NC_000962",151597,"T","C","8891.22","289.0","0.99","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
["G01498","NC_000962",151597,"T","C","4808.78","163.0","0.98","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
[7011,"NC_000962",151597,"T","C","2127.04","74.0","1.00","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
[7739,"NC_000962",151597,"T","C","1876.98","63.0","1.00","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
[58,"NC_000962",151597,"T","C",{"v":226942,"d":"226,942"},"8.0","0.89","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
[64,"NC_000962",151597,"T","C",{"v":794369,"d":"794,369"},"29.0","0.94","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
["MP2","NC_000962",151597,"T","C","6791.79","201.0","1.00","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
["MP1","NC_000962",151597,"T","C","5085.07","151.0","1.00","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
[54,"NC_000962",151597,"T","C",{"v":271013,"d":"271,013"},"10.0","1.00","Synon","ggt","ggC","450T>C","Gly150Gly",null,"fig|83332.12.peg.142","Rv0125","pepA","Periplasmic serine protease","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","synonymous_variantLOW"]
["G01222","NC_000962",152494,"C","T",{"v":563779,"d":"563,779"},"19.0","1.00","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
["G01491","NC_000962",152494,"C","T","3892.98","122.0","0.99","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
["G01492","NC_000962",152494,"C","T","10138.4","326.0","0.98","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
["G01498","NC_000962",152494,"C","T","4100.92","131.0","0.97","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
[7011,"NC_000962",152494,"C","T","2701.61","86.0","0.99","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
[7739,"NC_000962",152494,"C","T","2679.51","85.0","1.00","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
[58,"NC_000962",152494,"C","T",{"v":543157,"d":"543,157"},"18.0","1.00","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
[64,"NC_000962",152494,"C","T",{"v":901493,"d":"901,493"},"29.0","1.00","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
["MP2","NC_000962",152494,"C","T","7824.76","231.0","1.00","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
["MP1","NC_000962",152494,"C","T","8442.71","247.0","1.00","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
[54,"NC_000962",152494,"C","T","1013.75","40.0","0.95","Synon","ttc","ttT","171C>T","Phe57Phe",null,"fig|83332.12.peg.143","Rv0126","treS","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Periplasmic serine protease","Maltokinase (EC 2.7.1.175)","synonymous_variantLOW"]
["G01222","NC_000962",154283,"T","C",{"v":762606,"d":"762,606"},"23.0","1.00","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
["G01491","NC_000962",154283,"T","C","4758.44","153.0","0.98","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
["G01492","NC_000962",154283,"T","C","12667.5","399.0","1.00","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
["G01498","NC_000962",154283,"T","C","3373.0","111.0","0.98","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
[7011,"NC_000962",154283,"T","C","3009.89","98.0","1.00","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
[7739,"NC_000962",154283,"T","C","2362.83","78.0","1.00","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
[58,"NC_000962",154283,"T","C","2185.61","65.0","1.00","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
[64,"NC_000962",154283,"T","C","3175.11","100.0","0.99","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
["MP2","NC_000962",154283,"T","C","7711.77","228.0","1.00","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
["MP1","NC_000962",154283,"T","C","8452.06","247.0","0.99","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
[54,"NC_000962",154283,"T","C","1913.89","61.0","0.94","Nonsyn","tcg","Ccg","52T>C","Ser18Pro",null,"fig|83332.12.peg.144","Rv0127",null,"Maltokinase (EC 2.7.1.175)","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)","Putative transmembrane protein","missense_variantMODERATE"]
["G01222","NC_000962",170083,"A","G","917.24","31.0","0.97","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODIFIER"]
["G01491","NC_000962",170083,"A","G","7176.74","222.0","1.00","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",170083,"A","G","12690.2","415.0","0.97","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",170083,"A","G","2927.38","100.0","0.97","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",170083,"A","G","2320.23","76.0","1.00","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",170083,"A","G","2661.41","91.0","1.00","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",170083,"A","G","1178.83","39.0","0.97","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",170083,"A","G","2140.6","72.0","0.92","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",170083,"A","G","7148.48","215.0","1.00","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",170083,"A","G","8403.17","248.0","1.00","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",170083,"A","G","1871.87","67.0","0.93","Nonsyn","ttc","Ctc","100T>C","Phe34Leu",null,"fig|83332.12.peg.162","Rv0143c",null,"Chloride channel protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",170907,"A","C",{"v":719234,"d":"719,234"},"24.0","1.00","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
["G01491","NC_000962",170907,"A","C","4716.24","145.0","0.99","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
["G01492","NC_000962",170907,"A","C","10184.5","337.0","0.99","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
["G01498","NC_000962",170907,"A","C","1734.91","56.0","1.00","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
[7011,"NC_000962",170907,"A","C","3442.12","110.0","0.99","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
[7739,"NC_000962",170907,"A","C","2896.35","91.0","1.00","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
[58,"NC_000962",170907,"A","C","6074.68","191.0","0.97","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
[64,"NC_000962",170907,"A","C","2826.81","96.0","0.91","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
["MP2","NC_000962",170907,"A","C","8728.84","261.0","1.00","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
["MP1","NC_000962",170907,"A","C","8311.27","245.0","1.00","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
[54,"NC_000962",170907,"A","C","3361.23","111.0","0.94","Synon","cga","cgC","426A>C","Arg142Arg",null,"fig|83332.12.peg.164","Rv0144",null,"Transcriptional regulator, AcrR family","hypothetical protein","O-methyltransferase","synonymous_variantLOW"]
["G01222","NC_000962",177857,"G","A","458.63","17.0","1.00","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
["G01491","NC_000962",177857,"G","A","4025.78","124.0","1.00","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
["G01492","NC_000962",177857,"G","A","9124.11","285.0","0.99","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
["G01498","NC_000962",177857,"G","A","1796.09","55.0","1.00","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
[7011,"NC_000962",177857,"G","A","1940.53","73.0","1.00","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
[7739,"NC_000962",177857,"G","A","1851.71","68.0","1.00","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
[58,"NC_000962",177857,"G","A","2792.56","97.0","0.89","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
[64,"NC_000962",177857,"G","A","2280.16","100.0","0.65","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
["MP2","NC_000962",177857,"G","A","8005.64","232.0","1.00","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
["MP1","NC_000962",177857,"G","A","7390.62","218.0","1.00","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
[54,"NC_000962",177857,"G","A","23919.9","776.0","0.99","Synon","ctg","Ttg","1369C>T","Leu457Leu",null,"fig|83332.12.peg.172","Rv0151c","PE1","PE family protein ","hypothetical protein","PE family protein ","synonymous_variantLOW"]
["G01222","NC_000962",188800,"T","C","1013.5","36.0","1.00","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
["G01491","NC_000962",188800,"T","C","4095.43","131.0","1.00","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
["G01492","NC_000962",188800,"T","C","7977.1","262.0","0.99","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
["G01498","NC_000962",188800,"T","C","1687.55","56.0","1.00","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
[7011,"NC_000962",188800,"T","C","2488.51","85.0","1.00","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
[7739,"NC_000962",188800,"T","C","3082.99","107.0","1.00","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
[58,"NC_000962",188800,"T","C","1062.53","36.0","1.00","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
[64,"NC_000962",188800,"T","C","1400.16","53.0","0.82","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
["MP2","NC_000962",188800,"T","C","6359.61","187.0","1.00","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
["MP1","NC_000962",188800,"T","C","5966.95","177.0","1.00","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
[54,"NC_000962",188800,"T","C",{"v":933729,"d":"933,729"},"31.0","0.94","Nonsyn","acg","Gcg","40A>G","Thr14Ala",null,"fig|83332.12.peg.183","Rv0159c","PE3","PE family protein ","Transcriptional regulator, AcrR family","PE family protein ","missense_variantMODERATE"]
["G01222","NC_000962",189809,"C","T","976.17","32.0","1.00","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODIFIER"]
["G01491","NC_000962",189809,"C","T","3538.92","110.0","1.00","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODIFIER"]
["G01492","NC_000962",189809,"C","T","9860.6","313.0","0.99","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODIFIER"]
["G01498","NC_000962",189809,"C","T","2734.81","87.0","1.00","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODIFIER"]
[7011,"NC_000962",189809,"C","T","2452.71","90.0","0.99","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODIFIER"]
[7739,"NC_000962",189809,"C","T","2988.43","107.0","1.00","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODIFIER"]
[58,"NC_000962",189809,"C","T","2524.84","84.0","1.00","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODERATE"]
[64,"NC_000962",189809,"C","T","1876.26","64.0","1.00","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODERATE"]
["MP2","NC_000962",189809,"C","T","7409.66","217.0","1.00","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODIFIER"]
["MP1","NC_000962",189809,"C","T","7704.05","227.0","1.00","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODIFIER"]
[54,"NC_000962",189809,"C","T","3752.39","122.0","0.98","Nonsyn","gcc","Acc","631G>A","Ala211Thr",null,"fig|83332.12.peg.184","Rv0160c","PE4","PE family protein ","PE family protein ","FAD/FMN-containing dehydrogenases","missense_variantMODERATE"]
["G01222","NC_000962",191908,"G","T","715.64","23.0","1.00","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
["G01491","NC_000962",191908,"G","T","3813.82","126.0","0.95","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
["G01492","NC_000962",191908,"G","T","9990.51","325.0","0.96","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
["G01498","NC_000962",191908,"G","T","2254.45","78.0","0.92","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
[7011,"NC_000962",191908,"G","T","3322.07","108.0","0.99","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
[7739,"NC_000962",191908,"G","T","2385.58","79.0","0.98","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
[58,"NC_000962",191908,"G","T",{"v":232624,"d":"232,624"},"8.0","1.00","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
[64,"NC_000962",191908,"G","T",{"v":667473,"d":"667,473"},"20.0","1.00","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
["MP2","NC_000962",191908,"G","T","7454.13","223.0","1.00","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
["MP1","NC_000962",191908,"G","T","7916.54","242.0","0.99","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
[54,"NC_000962",191908,"G","T","272.09","9.0","1.00","Synon","gcg","gcT","1326G>T","Ala442Ala",null,"fig|83332.12.peg.185","Rv0161",null,"FAD/FMN-containing dehydrogenases","PE family protein ","Alcohol dehydrogenase (EC 1.1.1.1)","synonymous_variantLOW"]
["G01222","NC_000962",194057,"G","T","1225.87","38.0","1.00","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
["G01491","NC_000962",194057,"G","T","5005.84","158.0","0.98","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
["G01492","NC_000962",194057,"G","T","10685.5","347.0","0.97","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
["G01498","NC_000962",194057,"G","T","1477.09","55.0","0.86","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
[7011,"NC_000962",194057,"G","T","4043.86","126.0","0.98","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
[7739,"NC_000962",194057,"G","T","3886.7","118.0","0.99","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
[58,"NC_000962",194057,"G","T","5347.99","163.0","1.00","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
[64,"NC_000962",194057,"G","T","6718.88","210.0","0.99","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
["MP2","NC_000962",194057,"G","T","9625.44","281.0","1.00","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
["MP1","NC_000962",194057,"G","T","9256.21","277.0","0.99","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
[54,"NC_000962",194057,"G","T","10123.1","316.0","1.00","Synon","ctg","ctT","387G>T","Leu129Leu",null,"fig|83332.12.peg.188","Rv0164","TB18.5","Cyclase/dehydrase family protein","Propionyl-CoA thioesterase activity","Transcriptional regulator, GntR family","synonymous_variantLOW"]
["G01222","NC_000962",194681,"G","C",{"v":937686,"d":"937,686"},"30.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
["G01491","NC_000962",194681,"G","C","4080.73","126.0","0.98","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
["G01492","NC_000962",194681,"G","C","8384.68","259.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
["G01498","NC_000962",194681,"G","C","2236.28","73.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
[7011,"NC_000962",194681,"G","C","2558.63","85.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
[7739,"NC_000962",194681,"G","C","2030.59","67.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
[58,"NC_000962",194681,"G","C","1011.08","32.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
[64,"NC_000962",194681,"G","C","1661.19","51.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
["MP2","NC_000962",194681,"G","C","7682.65","225.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
["MP1","NC_000962",194681,"G","C","7711.69","226.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
[54,"NC_000962",194681,"G","C",{"v":654196,"d":"654,196"},"20.0","1.00","Synon","ctc","ctG","78C>G","Leu26Leu",null,"fig|83332.12.peg.189","Rv0165c",null,"Transcriptional regulator, GntR family","Cyclase/dehydrase family protein","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","synonymous_variantLOW"]
["G01222","NC_000962",195360,"T","C",{"v":828805,"d":"828,805"},"28.0","0.97","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
["G01491","NC_000962",195360,"T","C","4697.12","143.0","0.99","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
["G01492","NC_000962",195360,"T","C","11482.3","382.0","0.98","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
["G01498","NC_000962",195360,"T","C","2264.65","72.0","1.00","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
[7011,"NC_000962",195360,"T","C","2728.48","84.0","1.00","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
[7739,"NC_000962",195360,"T","C","2643.62","81.0","1.00","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
[58,"NC_000962",195360,"T","C","3573.5","114.0","1.00","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantMODERATE"]
[64,"NC_000962",195360,"T","C","4650.93","147.0","0.94","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
["MP2","NC_000962",195360,"T","C","7413.74","222.0","0.99","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
["MP1","NC_000962",195360,"T","C","7336.48","215.0","1.00","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
[54,"NC_000962",195360,"T","C","4635.89","147.0","0.99","Nonsyn","gtc","gCc","368T>C","Val123Ala",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","missense_variantLOW"]
["G01222","NC_000962",196642,"C","T","1067.15","35.0","1.00","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantMODERATE"]
["G01491","NC_000962",196642,"C","T","2786.73","86.0","1.00","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantMODERATE"]
["G01492","NC_000962",196642,"C","T","8728.37","279.0","1.00","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantMODERATE"]
["G01498","NC_000962",196642,"C","T","2295.69","74.0","1.00","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantMODERATE"]
[7011,"NC_000962",196642,"C","T","4224.78","133.0","1.00","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantMODERATE"]
[7739,"NC_000962",196642,"C","T","4088.9","131.0","0.99","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantMODERATE"]
[58,"NC_000962",196642,"C","T","13509.3","403.0","1.00","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantLOW"]
[64,"NC_000962",196642,"C","T","7283.15","224.0","1.00","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantLOW"]
["MP2","NC_000962",196642,"C","T","9459.53","277.0","1.00","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantMODERATE"]
["MP1","NC_000962",196642,"C","T","9422.37","273.0","1.00","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantMODERATE"]
[54,"NC_000962",196642,"C","T","59005.2","1740.0","0.99","Synon","aac","aaT","1650C>T","Asn550Asn",null,"fig|83332.12.peg.190","Rv0166","fadD5","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD5","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantLOW"]
["G01222","NC_000962",199470,"T","G",{"v":724051,"d":"724,051"},"23.0","1.00","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
["G01491","NC_000962",199470,"T","G","3390.69","106.0","1.00","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
["G01492","NC_000962",199470,"T","G","10230.1","327.0","0.99","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
["G01498","NC_000962",199470,"T","G","2568.92","83.0","1.00","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
[7011,"NC_000962",199470,"T","G","2634.93","87.0","1.00","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
[7739,"NC_000962",199470,"T","G","2023.72","66.0","1.00","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
[58,"NC_000962",199470,"T","G",{"v":944651,"d":"944,651"},"39.0","0.81","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
[64,"NC_000962",199470,"T","G",{"v":745791,"d":"745,791"},"26.0","0.87","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
["MP2","NC_000962",199470,"T","G","6456.93","188.0","1.00","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
["MP1","NC_000962",199470,"T","G","6628.54","195.0","0.99","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
[54,"NC_000962",199470,"T","G","2489.83","83.0","0.93","Nonsyn","tcc","Gcc","937T>G","Ser313Ala",null,"fig|83332.12.peg.193","Rv0169","mce1A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
["G01222","NC_000962",200430,"T","C","755.33","24.0","1.00","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
["G01491","NC_000962",200430,"T","C","3177.43","102.0","0.98","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
["G01492","NC_000962",200430,"T","C","10128.6","327.0","0.99","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
["G01498","NC_000962",200430,"T","C","3464.5","114.0","0.97","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
[7011,"NC_000962",200430,"T","C","3488.71","112.0","1.00","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
[7739,"NC_000962",200430,"T","C","2626.06","82.0","1.00","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
[58,"NC_000962",200430,"T","C","2505.64","85.0","0.93","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
[64,"NC_000962",200430,"T","C","2424.56","86.0","0.80","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
["MP2","NC_000962",200430,"T","C","8898.76","260.0","1.00","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
["MP1","NC_000962",200430,"T","C","8507.27","247.0","1.00","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
[54,"NC_000962",200430,"T","C","3909.92","128.0","0.93","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.194","Rv0170","mce1B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceC","missense_variantMODERATE"]
["G01222","NC_000962",201567,"G","C","1138.96","35.0","1.00","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantHIGH"]
["G01491","NC_000962",201567,"G","C","4374.97","138.0","0.99","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantHIGH"]
["G01492","NC_000962",201567,"G","C","10491.0","332.0","0.99","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantHIGH"]
["G01498","NC_000962",201567,"G","C","2817.23","94.0","0.98","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantHIGH"]
[7011,"NC_000962",201567,"G","C","3149.16","94.0","1.00","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantHIGH"]
[7739,"NC_000962",201567,"G","C","3244.34","99.0","0.99","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantHIGH"]
[58,"NC_000962",201567,"G","C","1069.12","33.0","0.97","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantMODERATE"]
[64,"NC_000962",201567,"G","C","1414.5","43.0","0.98","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantMODERATE"]
["MP2","NC_000962",201567,"G","C","7749.47","228.0","1.00","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantHIGH"]
["MP1","NC_000962",201567,"G","C","9191.92","268.0","1.00","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantHIGH"]
[54,"NC_000962",201567,"G","C","2606.31","82.0","0.99","Nonsyn","gag","gaC","594G>C","Glu198Asp",null,"fig|83332.12.peg.195","Rv0171","mce1C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","missense_variantMODERATE"]
["G01222","NC_000962",206229,"T","C",{"v":632383,"d":"632,383"},"26.0","1.00","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
["G01491","NC_000962",206229,"T","C","3295.23","106.0","0.98","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
["G01492","NC_000962",206229,"T","C","8576.6","281.0","0.96","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
["G01498","NC_000962",206229,"T","C","2094.05","78.0","0.89","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
[7011,"NC_000962",206229,"T","C","2854.85","93.0","1.00","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
[7739,"NC_000962",206229,"T","C","2618.39","88.0","0.96","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
[58,"NC_000962",206229,"T","C",{"v":306547,"d":"306,547"},"12.0","0.92","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
[64,"NC_000962",206229,"T","C",{"v":355034,"d":"355,034"},"12.0","1.00","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
["MP2","NC_000962",206229,"T","C","6746.56","199.0","1.00","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
["MP1","NC_000962",206229,"T","C","6573.73","196.0","1.00","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
[54,"NC_000962",206229,"T","C",{"v":599678,"d":"599,678"},"23.0","0.96","Synon","tct","tcC","999T>C","Ser333Ser",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
["G01222","NC_000962",206339,"T","C",{"v":811056,"d":"811,056"},"28.0","0.97","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
["G01491","NC_000962",206339,"T","C","3440.0","110.0","1.00","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
["G01492","NC_000962",206339,"T","C","7667.63","244.0","1.00","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
["G01498","NC_000962",206339,"T","C","2261.87","75.0","0.99","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
[7011,"NC_000962",206339,"T","C","3047.15","98.0","1.00","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
[7739,"NC_000962",206339,"T","C","3308.76","105.0","0.99","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
[58,"NC_000962",206339,"T","C","3212.08","98.0","1.00","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
[64,"NC_000962",206339,"T","C","4059.54","120.0","0.98","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODIFIER"]
["MP2","NC_000962",206339,"T","C","5684.79","167.0","1.00","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
["MP1","NC_000962",206339,"T","C","6423.99","188.0","1.00","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
[54,"NC_000962",206339,"T","C","3569.89","112.0","0.96","Nonsyn","ctg","cCg","1109T>C","Leu370Pro",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","missense_variantMODERATE"]
["G01222","NC_000962",206481,"CGGG","GGGT",{"v":459579,"d":"459,579"},"17.0","0.94","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantMODERATE"]
["G01491","NC_000962",206481,"CGGG","GGGT","3294.47","108.0","0.94","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantMODERATE"]
["G01492","NC_000962",206481,"CGGG","GGGT","5226.85","163.0","0.95","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantMODERATE"]
["G01498","NC_000962",206481,"CGGG","GGGT","2685.15","86.0","0.99","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantMODERATE"]
[7011,"NC_000962",206481,"CGGG","GGGT","2280.67","67.0","0.99","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantMODERATE"]
[7739,"NC_000962",206481,"CGGG","GGGT","2412.08","72.0","0.99","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantMODERATE"]
[58,"NC_000962",206481,"CGGG","GGGT",{"v":751159,"d":"751,159"},"21.0","1.00","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
[64,"NC_000962",206481,"CGGG","GGGT","1112.29","29.0","0.94","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
["MP2","NC_000962",206481,"CGGG","GGGT","4903.68","147.0","0.95","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantMODERATE"]
["MP1","NC_000962",206481,"CGGG","GGGT","4398.64","129.0","0.96","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantMODERATE"]
[54,"NC_000962",206481,"CGGG","GGGT","1367.04","33.0","0.97","Synon","cccggg","ccGGGT","1251CGGG>GGGT","ProGly417ProGly",null,"fig|83332.12.peg.198","Rv0174","mce1F","MCE-family protein MceF","MCE-family lipoprotein MceE","FIG033430: Probable conserved MCE associated membrane protein","synonymous_variantLOW"]
["G01222","NC_000962",208316,"ATT","AT",{"v":652025,"d":"652,025"},"22.0","1.00","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
["G01491","NC_000962",208316,"ATT","AT","2830.93","95.0","0.92","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
["G01492","NC_000962",208316,"ATT","AT","7601.5","247.0","0.94","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
["G01498","NC_000962",208316,"ATT","AT","1779.84","60.0","0.94","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
[7011,"NC_000962",208316,"ATT","AT","1179.77","45.0","0.98","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
[7739,"NC_000962",208316,"ATT","AT","1141.79","44.0","1.00","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
[58,"NC_000962",208316,"ATT","AT","1158.42","37.0","1.00","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
[64,"NC_000962",208316,"ATT","AT",{"v":664994,"d":"664,994"},"22.0","1.00","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
["MP2","NC_000962",208316,"ATT","AT","5185.77","155.0","0.98","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
["MP1","NC_000962",208316,"ATT","AT","4663.0","140.0","0.97","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
[54,"NC_000962",208316,"ATT","AT","726.84","24.0","1.00","Deletion","att","AT","861delT","Ile287fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein","frameshift_variantHIGH"]
["G01222","NC_000962",208321,"GT","GCG",{"v":694486,"d":"694,486"},"22.0","1.00","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
["G01491","NC_000962",208321,"GT","GCG","2718.7","89.0","0.98","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
["G01492","NC_000962",208321,"GT","GCG","7421.74","240.0","0.98","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
["G01498","NC_000962",208321,"GT","GCG","1745.85","59.0","0.97","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
[7011,"NC_000962",208321,"GT","GCG","1153.79","44.0","1.00","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
[7739,"NC_000962",208321,"GT","GCG","1221.48","44.0","1.00","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
[58,"NC_000962",208321,"GT","GCG","1073.9","33.0","1.00","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
[64,"NC_000962",208321,"GT","GCG",{"v":680663,"d":"680,663"},"20.0","1.00","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
["MP2","NC_000962",208321,"GT","GCG","5200.67","153.0","1.00","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
["MP1","NC_000962",208321,"GT","GCG","4624.86","135.0","0.99","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
[54,"NC_000962",208321,"GT","GCG",{"v":639718,"d":"639,718"},"20.0","1.00","Insertion","cagtca","caGCGca","865delTinsCG","Ser289fs","yes","fig|83332.12.peg.200","Rv0176",null,"FIG033285: Conserved MCE associated transmembrane protein","FIG033430: Probable conserved MCE associated membrane protein","FIG00821219: MCE associated membrane protein"]
["G01222","NC_000962",209424,"G","A",{"v":935114,"d":"935,114"},"29.0","1.00","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
["G01491","NC_000962",209424,"G","A","3808.09","118.0","0.98","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
["G01492","NC_000962",209424,"G","A","11187.2","362.0","0.98","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
["G01498","NC_000962",209424,"G","A","1945.06","69.0","0.92","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
[7011,"NC_000962",209424,"G","A","3601.85","122.0","0.98","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
[7739,"NC_000962",209424,"G","A","2957.99","100.0","0.98","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
[58,"NC_000962",209424,"G","A","6678.65","205.0","1.00","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
[64,"NC_000962",209424,"G","A","4576.73","141.0","1.00","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
["MP2","NC_000962",209424,"G","A","9250.18","268.0","1.00","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
["MP1","NC_000962",209424,"G","A","8285.47","245.0","1.00","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
[54,"NC_000962",209424,"G","A","7710.19","250.0","0.99","Nonsyn","gcc","Acc","487G>A","Ala163Thr",null,"fig|83332.12.peg.202","Rv0178",null,"FIG00820195: MCE associated membrane protein","FIG00821219: MCE associated membrane protein","Lipoprotein LprO","missense_variantMODERATE"]
["G01222","NC_000962",210442,"C","T",{"v":587238,"d":"587,238"},"20.0","1.00","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
["G01491","NC_000962",210442,"C","T","4190.48","130.0","0.97","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
["G01492","NC_000962",210442,"C","T","10694.5","345.0","0.97","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
["G01498","NC_000962",210442,"C","T","3042.24","102.0","1.00","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
[7011,"NC_000962",210442,"C","T","3025.12","105.0","0.99","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
[7739,"NC_000962",210442,"C","T","2795.84","96.0","0.98","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
[58,"NC_000962",210442,"C","T","1319.83","47.0","1.00","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
[64,"NC_000962",210442,"C","T",{"v":854644,"d":"854,644"},"31.0","1.00","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
["MP2","NC_000962",210442,"C","T","6393.96","196.0","0.98","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
["MP1","NC_000962",210442,"C","T","5755.67","177.0","0.99","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
[54,"NC_000962",210442,"C","T","1723.0","60.0","0.97","Nonsyn","cgc","cAc","371G>A","Arg124His",null,"fig|83332.12.peg.203","Rv0179c","lprO","Lipoprotein LprO","FIG00820195: MCE associated membrane protein","putative membrane protein","missense_variantMODERATE"]
["G01222","NC_000962",214378,"G","A","1236.55","41.0","1.00","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
["G01491","NC_000962",214378,"G","A","5653.06","186.0","0.97","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
["G01492","NC_000962",214378,"G","A","11509.9","385.0","0.97","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
["G01498","NC_000962",214378,"G","A","2181.79","76.0","0.90","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
[7011,"NC_000962",214378,"G","A","3579.07","110.0","1.00","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
[7739,"NC_000962",214378,"G","A","3547.44","110.0","0.99","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
[58,"NC_000962",214378,"G","A",{"v":878369,"d":"878,369"},"29.0","1.00","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
[64,"NC_000962",214378,"G","A",{"v":324948,"d":"324,948"},"12.0","1.00","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
["MP2","NC_000962",214378,"G","A","6977.08","220.0","0.98","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
["MP1","NC_000962",214378,"G","A","7249.87","223.0","0.99","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
[54,"NC_000962",214378,"G","A",{"v":755936,"d":"755,936"},"26.0","1.00","Synon","cgg","cgA","291G>A","Arg97Arg",null,"fig|83332.12.peg.207","Rv0183",null,"Lysophospholipase (EC 3.1.1.5)","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184","synonymous_variantLOW"]
["G01222","NC_000962",217201,"T","C",{"v":738675,"d":"738,675"},"25.0","1.00","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",217201,"T","C","5670.0","176.0","1.00","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",217201,"T","C","12975.3","406.0","0.99","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",217201,"T","C","1870.49","60.0","0.98","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",217201,"T","C","2923.4","92.0","1.00","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",217201,"T","C","3060.13","97.0","1.00","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",217201,"T","C","2177.23","66.0","0.99","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",217201,"T","C","4358.64","137.0","0.98","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",217201,"T","C","6041.05","177.0","1.00","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",217201,"T","C","6841.99","202.0","1.00","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",217201,"T","C","2437.63","78.0","0.99","Synon","aat","aaC","933T>C","Asn311Asn",null,"fig|83332.12.peg.210","Rv0186","bglS","beta-glucosidase (EC 3.2.1.21)","hypothetical protein Rv0185","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",218540,"T","C","1375.93","42.0","1.00",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODERATE"]
["G01491","NC_000962",218540,"T","C","6085.88","189.0","1.00",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODERATE"]
["G01492","NC_000962",218540,"T","C","10260.1","324.0","0.98",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODERATE"]
["G01498","NC_000962",218540,"T","C","1998.43","71.0","0.95",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODERATE"]
[7011,"NC_000962",218540,"T","C","1843.94","57.0","0.98",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODERATE"]
[7739,"NC_000962",218540,"T","C","3296.51","103.0","1.00",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODERATE"]
[58,"NC_000962",218540,"T","C","1660.13","51.0","0.96",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODIFIER"]
[64,"NC_000962",218540,"T","C",{"v":725054,"d":"725,054"},"24.0","0.92",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODIFIER"]
["MP2","NC_000962",218540,"T","C","7328.32","216.0","1.00",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODERATE"]
["MP1","NC_000962",218540,"T","C","6688.71","194.0","1.00",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODERATE"]
[54,"NC_000962",218540,"T","C","4534.29","140.0","0.99",{"$nulls":10},"hypothetical protein","O-methyltransferase Rv0190","intergenic_regionMODIFIER"]
["G01222","NC_000962",218978,"G","C","1275.34","42.0","0.98","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",218978,"G","C","6354.43","202.0","0.96","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",218978,"G","C","11314.1","365.0","0.99","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",218978,"G","C","2003.54","68.0","0.96","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",218978,"G","C","3217.28","101.0","1.00","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",218978,"G","C","3406.77","110.0","0.98","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",218978,"GA","CA","112.3","5.0","0.71","Nonsyn","gaa","CAa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",218978,"G","C",{"v":531181,"d":"531,181"},"17.0","1.00","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",218978,"G","C","7003.14","208.0","1.00","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",218978,"G","C","7398.25","219.0","1.00","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",218978,"G","C","1823.33","58.0","0.97","Nonsyn","gaa","Caa","274G>C","Glu92Gln",null,"fig|83332.12.peg.212","Rv0187",null,"O-methyltransferase Rv0190","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",220807,"A","G",{"v":673839,"d":"673,839"},"21.0","1.00","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantMODERATE"]
["G01491","NC_000962",220807,"A","G","4424.96","137.0","0.98","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantMODERATE"]
["G01492","NC_000962",220807,"A","G","8302.03","280.0","0.97","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantMODERATE"]
["G01498","NC_000962",220807,"A","G","1208.09","43.0","0.91","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantMODERATE"]
[7011,"NC_000962",220807,"A","G","3257.36","100.0","1.00","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantMODERATE"]
[7739,"NC_000962",220807,"A","G","2365.24","76.0","1.00","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantMODERATE"]
[58,"NC_000962",220807,"A","G",{"v":511817,"d":"511,817"},"17.0","1.00","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantLOW"]
[64,"NC_000962",220807,"A","G",{"v":650003,"d":"650,003"},"23.0","0.92","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantMODERATE"]
["MP2","NC_000962",220807,"A","G","5657.69","170.0","1.00","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantMODERATE"]
["MP1","NC_000962",220807,"A","G","5782.33","179.0","1.00","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantMODERATE"]
[54,"NC_000962",220807,"A","G","1664.75","55.0","0.98","Nonsyn","gtc","gCc","917T>C","Val306Ala",null,"fig|83332.12.peg.214","Rv0189c","ilvD","Dihydroxy-acid dehydratase (EC 4.2.1.9)","hypothetical protein","Metal-sensitive transcriptional repressor","missense_variantLOW"]
["G01222","NC_000962",223942,"T","C",{"v":341615,"d":"341,615"},"14.0","1.00","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",223942,"T","C","4205.9","137.0","1.00","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",223942,"T","C","6647.17","226.0","0.99","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",223942,"T","C","1623.15","54.0","0.98","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",223942,"T","C","1892.34","72.0","1.00","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",223942,"T","C","1658.15","62.0","1.00","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",223942,"T","C",{"v":700426,"d":"700,426"},"25.0","0.96","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",223942,"T","C","1603.88","56.0","0.97","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",223942,"T","C","3816.1","117.0","0.99","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",223942,"T","C","3296.93","99.0","1.00","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",223942,"T","C","2352.73","79.0","0.99","Nonsyn","tcg","Ccg","145T>C","Ser49Pro",null,"fig|83332.12.peg.217","Rv0192",null,"L,D-transpeptidase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",225323,"T","C",{"v":380032,"d":"380,032"},"12.0","1.00","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",225323,"T","C","3586.13","111.0","1.00","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",225323,"T","C","11098.4","359.0","0.99","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",225323,"T","C","2894.22","95.0","0.99","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",225323,"T","C","1265.11","45.0","1.00","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",225323,"T","C","1408.42","50.0","0.98","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",225323,"T","C",{"v":481257,"d":"481,257"},"18.0","0.90","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",225323,"T","C","594.68","25.0","0.89","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",225323,"T","C","6635.71","197.0","1.00","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",225323,"T","C","6127.55","181.0","0.99","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",225323,"T","C",{"v":237628,"d":"237,628"},"9.0","1.00","Nonsyn","aag","Gag","1228A>G","Lys410Glu",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",225668,"C","T","1247.01","39.0","1.00","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",225668,"C","T","3723.97","118.0","0.96","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODIFIER"]
["G01492","NC_000962",225668,"C","T","10044.6","317.0","0.98","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",225668,"C","T","2489.59","79.0","0.99","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODIFIER"]
[7011,"NC_000962",225668,"C","T","3305.73","105.0","1.00","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",225668,"C","T","3032.05","95.0","1.00","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",225668,"C","T","3950.5","124.0","0.99","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",225668,"C","T","5138.55","161.0","0.99","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",225668,"C","T","8419.04","244.0","1.00","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",225668,"C","T","7292.93","215.0","1.00","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",225668,"C","T","3843.21","123.0","0.99","Nonsyn","ggt","Agt","883G>A","Gly295Ser",null,"fig|83332.12.peg.218","Rv0193c",null,"hypothetical protein","L,D-transpeptidase","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",227098,"T","C",{"v":636285,"d":"636,285"},"20.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",227098,"T","C","3837.12","121.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",227098,"T","C","9655.24","319.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",227098,"T","C","2378.91","76.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",227098,"T","C","3018.74","95.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",227098,"T","C","3438.66","109.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",227098,"T","C",{"v":177771,"d":"177,771"},"6.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",227098,"T","C",{"v":284645,"d":"284,645"},"10.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",227098,"T","C","7569.64","219.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",227098,"T","C","6962.91","201.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",227098,"T","C","1070.49","34.0","1.00","Nonsyn","atg","aCg","221T>C","Met74Thr",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",227860,"C","T",{"v":630457,"d":"630,457"},"24.0","0.89","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantHIGH"]
["G01491","NC_000962",227860,"C","T","6107.47","194.0","0.98","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",227860,"C","T","10903.1","357.0","0.98","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",227860,"C","T","1693.18","61.0","0.94","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",227860,"C","T","3610.98","110.0","1.00","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantHIGH"]
[7739,"NC_000962",227860,"C","T","2489.5","78.0","0.96","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantHIGH"]
[58,"NC_000962",227860,"C","T",{"v":297598,"d":"297,598"},"9.0","1.00","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",227860,"C","T",{"v":164071,"d":"164,071"},"9.0","0.82","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",227860,"C","T","7335.67","222.0","0.99","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantHIGH"]
["MP1","NC_000962",227860,"C","T","7816.74","240.0","0.99","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantHIGH"]
[54,"NC_000962",227860,"C","T","745.94","27.0","1.00","Nonsyn","ccg","cTg","983C>T","Pro328Leu",null,"fig|83332.12.peg.220","Rv0194",null,"Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",230576,"GTC","GTTC",{"v":683408,"d":"683,408"},"26.0","1.00","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantLOW"]
["G01491","NC_000962",230576,"GTC","GTTC","3506.02","112.0","1.00","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantLOW"]
["G01492","NC_000962",230576,"GTC","GTTC","8609.9","283.0","0.96","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantLOW"]
["G01498","NC_000962",230576,"GTC","GTTC","2588.92","84.0","1.00","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantLOW"]
[7011,"NC_000962",230576,"GTC","GTTC","2820.66","93.0","0.95","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantLOW"]
[7739,"NC_000962",230576,"GTC","GTTC","2659.68","88.0","0.95","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantLOW"]
[58,"NC_000962",230576,"GTC","GTTC","3808.55","115.0","0.98","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantMODERATE"]
[64,"NC_000962",230576,"GTC","GTTC","2116.92","64.0","0.98","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantMODERATE"]
["MP2","NC_000962",230576,"GTC","GTTC","6186.51","187.0","0.95","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantLOW"]
["MP1","NC_000962",230576,"GTC","GTTC","5713.96","181.0","0.96","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantLOW"]
[54,"NC_000962",230576,"GTC","GTTC","4473.36","144.0","0.87","Insertion","agacgc","aGAACgc","17_18insA","Arg6_Arg7fs","yes","fig|83332.12.peg.221",null,null,"hypothetical protein","Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2","Transcriptional regulator, LuxR family","frameshift_variantLOW"]
["G01222","NC_000962",231114,"C","G",{"v":793092,"d":"793,092"},"25.0","1.00","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
["G01491","NC_000962",231114,"C","G","4243.88","134.0","0.99","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
["G01492","NC_000962",231114,"C","G","9981.91","324.0","0.99","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
["G01498","NC_000962",231114,"C","G","1393.62","49.0","0.98","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
[7011,"NC_000962",231114,"C","G","2782.49","88.0","1.00","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
[7739,"NC_000962",231114,"C","G","3086.93","97.0","0.99","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
[58,"NC_000962",231114,"C","G","1903.0","58.0","1.00","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
[64,"NC_000962",231114,"C","G","1886.24","59.0","0.98","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
["MP2","NC_000962",231114,"C","G","8097.68","240.0","1.00","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
["MP1","NC_000962",231114,"C","G","8578.57","255.0","1.00","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
[54,"NC_000962",231114,"C","G","3325.86","110.0","0.98","Synon","gcc","gcG","279C>G","Ala93Ala",null,"fig|83332.12.peg.222","Rv0195",null,"Transcriptional regulator, LuxR family","hypothetical protein","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
["G01222","NC_000962",231929,"G","A",{"v":331558,"d":"331,558"},"12.0","1.00","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
["G01491","NC_000962",231929,"G","A","4103.85","135.0","0.95","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
["G01492","NC_000962",231929,"G","A","9547.33","312.0","0.97","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
["G01498","NC_000962",231929,"G","A","1203.15","52.0","0.90","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
[7011,"NC_000962",231929,"G","A","2363.37","82.0","0.99","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
[7739,"NC_000962",231929,"G","A","2632.13","85.0","0.99","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
[58,"NC_000962",231929,"G","A",{"v":307537,"d":"307,537"},"11.0","1.00","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
[64,"NC_000962",231929,"G","A","1069.94","37.0","0.97","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
["MP2","NC_000962",231929,"G","A","7143.03","211.0","1.00","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
["MP1","NC_000962",231929,"G","A","7995.18","240.0","1.00","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
[54,"NC_000962",231929,"G","A",{"v":707075,"d":"707,075"},"27.0","1.00","Nonsyn","gcc","Acc","283G>A","Ala95Thr",null,"fig|83332.12.peg.223","Rv0196",null,"Transcriptional regulator, AcrR family","Transcriptional regulator, LuxR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","missense_variantMODERATE"]
["G01222","NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGA",{"v":536291,"d":"536,291"},"20.0","0.87","Insertion","tacggcggcggcggacag","tACGGCGGCGGCGGCGGAcag","330_331insCGG","Gly110_Gln111insGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
["G01491","NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGCGGA","2827.77","98.0","0.92","Insertion","tacggcggcggcggacagggc","tACGGCGGCGGCGGCGGCGGAcagggc","330_331insCGGCGG","Gly110_Gln111insGlyGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
["G01492","NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGA","8094.73","265.0","0.92","Insertion","tacggcggcggcggacag","tACGGCGGCGGCGGCGGAcag","330_331insCGG","Gly110_Gln111insGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
["G01498","NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGCGGA","1163.78","37.0","0.95","Insertion","tacggcggcggcggacagggc","tACGGCGGCGGCGGCGGCGGAcagggc","330_331insCGGCGG","Gly110_Gln111insGlyGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
[7011,"NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGA",{"v":864044,"d":"864,044"},"31.0","0.86","Insertion","tacggcggcggcggacag","tACGGCGGCGGCGGCGGAcag","330_331insCGG","Gly110_Gln111insGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
[7739,"NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGA",{"v":858102,"d":"858,102"},"32.0","0.78","Insertion","tacggcggcggcggacag","tACGGCGGCGGCGGCGGAcag","330_331insCGG","Gly110_Gln111insGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
[58,"NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGA","2574.02","86.0","0.87","Insertion","tacggcggcggcggacag","tACGGCGGCGGCGGCGGAcag","330_331insCGG","Gly110_Gln111insGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
[64,"NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGA","1447.15","54.0","0.64","Insertion","tacggcggcggcggacag","tACGGCGGCGGCGGCGGAcag","330_331insCGG","Gly110_Gln111insGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
["MP2","NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGA","4203.95","134.0","0.92","Insertion","tacggcggcggcggacag","tACGGCGGCGGCGGCGGAcag","330_331insCGG","Gly110_Gln111insGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
["MP1","NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGA","4609.97","146.0","0.95","Insertion","tacggcggcggcggacag","tACGGCGGCGGCGGCGGAcag","330_331insCGG","Gly110_Gln111insGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
[54,"NC_000962",232544,"ACGGCGGCGGCGGA","ACGGCGGCGGCGGCGGA","4983.29","162.0","0.85","Insertion","tacggcggcggcggacag","tACGGCGGCGGCGGCGGAcag","330_331insCGG","Gly110_Gln111insGlyGly",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","disruptive_inframe_insertionMODERATE"]
["G01222","NC_000962",233358,"A","C",{"v":440245,"d":"440,245"},"14.0","1.00","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
["G01491","NC_000962",233358,"A","C","5889.89","182.0","1.00","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
["G01492","NC_000962",233358,"A","C","12402.1","405.0","0.99","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
["G01498","NC_000962",233358,"A","C","2593.88","87.0","1.00","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
[7011,"NC_000962",233358,"A","C","2138.97","72.0","0.97","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
[7739,"NC_000962",233358,"A","C","2554.93","81.0","1.00","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
[58,"NC_000962",233358,"A","C","4903.52","154.0","0.99","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
[64,"NC_000962",233358,"A","C","5650.01","172.0","0.98","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
["MP2","NC_000962",233358,"A","C","6932.32","202.0","1.00","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
["MP1","NC_000962",233358,"A","C","5592.52","168.0","1.00","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
[54,"NC_000962",233358,"A","C","4918.3","156.0","0.98","Synon","gta","gtC","1131A>C","Val377Val",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","synonymous_variantLOW"]
["G01222","NC_000962",233364,"G","C",{"v":443443,"d":"443,443"},"15.0","1.00","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
["G01491","NC_000962",233364,"G","C","5907.17","183.0","1.00","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
["G01492","NC_000962",233364,"G","C","12540.0","403.0","0.99","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
["G01498","NC_000962",233364,"G","C","2703.76","88.0","1.00","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
[7011,"NC_000962",233364,"G","C","1819.61","62.0","0.95","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
[7739,"NC_000962",233364,"G","C","2525.41","84.0","0.98","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
[58,"NC_000962",233364,"G","C","4404.69","142.0","0.99","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
[64,"NC_000962",233364,"G","C","4794.22","147.0","0.99","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
["MP2","NC_000962",233364,"G","C","6783.39","197.0","1.00","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
["MP1","NC_000962",233364,"G","C","5464.83","159.0","1.00","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
[54,"NC_000962",233364,"G","C","4395.69","139.0","0.99","Nonsyn","agg","agC","1137G>C","Arg379Ser",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","missense_variantMODERATE"]
["G01222","NC_000962",234477,"T","G",{"v":977348,"d":"977,348"},"30.0","1.00","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
["G01491","NC_000962",234477,"T","G","4339.6","142.0","0.99","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
["G01492","NC_000962",234477,"T","G","8396.01","272.0","0.97","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
["G01498","NC_000962",234477,"T","G","2360.19","80.0","0.99","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
[7011,"NC_000962",234477,"T","G",{"v":555525,"d":"555,525"},"26.0","1.00","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
[7739,"NC_000962",234477,"T","G","443.39","22.0","1.00","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
[58,"NC_000962",234477,"T","G","2951.99","125.0","0.78","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
[64,"NC_000962",234477,"T","G","1675.84","83.0","0.66","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
["MP2","NC_000962",234477,"T","G","2907.79","86.0","1.00","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
["MP1","NC_000962",234477,"T","G","2649.67","78.0","1.00","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
[54,"NC_000962",234477,"T","G","5096.92","195.0","0.81","Nonsyn","tat","taG","2250T>G","Tyr750*",null,"fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","stop_gainedHIGH"]
["G01222","NC_000962",234496,"CC","CGTC","1050.93","33.0","1.00","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
["G01491","NC_000962",234496,"CC","CGTC","3955.18","129.0","0.97","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
["G01492","NC_000962",234496,"CC","CGTC","8385.47","271.0","0.96","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
["G01498","NC_000962",234496,"CC","CGTC","2371.67","81.0","0.95","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
[7011,"NC_000962",234496,"CC","CGTC",{"v":818055,"d":"818,055"},"38.0","1.00","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
[7739,"NC_000962",234496,"CC","CGTC",{"v":798298,"d":"798,298"},"34.0","0.97","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
[58,"NC_000962",234496,"CC","CGTC","6133.17","209.0","0.98","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
[64,"NC_000962",234496,"CC","CGTC","3722.27","144.0","0.95","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
["MP2","NC_000962",234496,"CC","CGTC","2932.56","88.0","0.99","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
["MP1","NC_000962",234496,"CC","CGTC","2405.45","75.0","0.94","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
[54,"NC_000962",234496,"CC","CGTC","7154.13","256.0","0.97","Insertion","cctgct","CGTCtgct","2270_2271insGT","Pro757_Ala758fs","yes","fig|83332.12.peg.224","Rv0197",null,"Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","Transcriptional regulator, AcrR family","Metallopeptidase","frameshift_variantHIGH"]
["G01222","NC_000962",242299,"C","G",{"v":558716,"d":"558,716"},"22.0","0.96","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantMODERATE"]
["G01491","NC_000962",242299,"C","G","5133.43","163.0","0.99","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantMODERATE"]
["G01492","NC_000962",242299,"C","G","10461.6","347.0","0.99","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantMODERATE"]
["G01498","NC_000962",242299,"C","G","2350.24","77.0","0.99","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantMODERATE"]
[7011,"NC_000962",242299,"C","G","2475.65","82.0","1.00","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantLOW"]
[7739,"NC_000962",242299,"C","G","2341.68","79.0","1.00","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantLOW"]
[58,"NC_000962",242299,"C","G",{"v":678785,"d":"678,785"},"21.0","1.00","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantMODERATE"]
[64,"NC_000962",242299,"C","G",{"v":927039,"d":"927,039"},"30.0","1.00","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantMODERATE"]
["MP2","NC_000962",242299,"C","G","5262.14","156.0","1.00","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantLOW"]
["MP1","NC_000962",242299,"C","G","5545.72","166.0","0.99","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantMODERATE"]
[54,"NC_000962",242299,"C","G","7511.83","246.0","0.99","Nonsyn","gtg","Ctg","802G>C","Val268Leu",null,"fig|83332.12.peg.231","Rv0204c",null,"FIG01121868: Possible membrane protein, Rv0204c","Mycobacterial hemophore asspociated with MmpL11/MmpL3 transport system","FIG01121868: Possible membrane protein, Rv0205","missense_variantMODERATE"]
["G01222","NC_000962",243598,"A","G",{"v":530429,"d":"530,429"},"19.0","1.00","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
["G01491","NC_000962",243598,"A","G","5988.91","188.0","1.00","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
["G01492","NC_000962",243598,"A","G","10901.6","349.0","1.00","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
["G01498","NC_000962",243598,"A","G","2597.52","91.0","0.96","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
[7011,"NC_000962",243598,"A","G","2787.06","95.0","0.99","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
[7739,"NC_000962",243598,"A","G","2289.81","78.0","1.00","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
[58,"NC_000962",243598,"A","G","1219.66","41.0","1.00","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
[64,"NC_000962",243598,"A","G","1702.1","57.0","0.92","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
["MP2","NC_000962",243598,"A","G","6978.36","213.0","1.00","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
["MP1","NC_000962",243598,"A","G","7321.32","219.0","1.00","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
[54,"NC_000962",243598,"A","G","1590.79","50.0","1.00","Nonsyn","cac","cGc","215A>G","His72Arg",null,"fig|83332.12.peg.232","Rv0205",null,"FIG01121868: Possible membrane protein, Rv0205","FIG01121868: Possible membrane protein, Rv0204c","Transmembrane heme transport protein MmpL3","missense_variantMODERATE"]
["G01222","NC_000962",245921,"G","C","1286.3","40.0","1.00","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODIFIER"]
["G01491","NC_000962",245921,"G","C","4008.03","127.0","0.98","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
["G01492","NC_000962",245921,"G","C","9536.92","312.0","0.97","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
["G01498","NC_000962",245921,"G","C","1314.86","44.0","1.00","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
[7011,"NC_000962",245921,"G","C","3193.63","96.0","1.00","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
[7739,"NC_000962",245921,"G","C","2606.36","81.0","1.00","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
[58,"NC_000962",245921,"G","C","4551.32","137.0","0.99","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
[64,"NC_000962",245921,"G","C","5655.79","175.0","0.99","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODIFIER"]
["MP2","NC_000962",245921,"G","C","8500.49","252.0","1.00","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODIFIER"]
["MP1","NC_000962",245921,"G","C","9526.76","279.0","1.00","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODIFIER"]
[54,"NC_000962",245921,"G","C","2210.32","69.0","1.00","Nonsyn","gac","gaG","1398C>G","Asp466Glu",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
["G01222","NC_000962",246169,"A","T",{"v":533759,"d":"533,759"},"17.0","1.00","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
["G01491","NC_000962",246169,"A","T","4385.21","138.0","1.00","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
["G01492","NC_000962",246169,"A","T","11258.0","369.0","0.99","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
["G01498","NC_000962",246169,"A","T","1975.98","62.0","0.98","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
[7011,"NC_000962",246169,"A","T","2752.28","87.0","1.00","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
[7739,"NC_000962",246169,"A","T","2521.69","80.0","1.00","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
[58,"NC_000962",246169,"A","T","1870.3","57.0","0.98","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
[64,"NC_000962",246169,"A","T","3233.76","101.0","0.98","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
["MP2","NC_000962",246169,"A","T","8076.57","243.0","1.00","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
["MP1","NC_000962",246169,"A","T","7355.94","219.0","0.99","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
[54,"NC_000962",246169,"A","T","5029.81","163.0","0.95","Nonsyn","ttc","Atc","1150T>A","Phe384Ile",null,"fig|83332.12.peg.233","Rv0206c","mmpL3","Transmembrane heme transport protein MmpL3","FIG01121868: Possible membrane protein, Rv0205","FIG00820733: hypothetical protein, Rv0207c","missense_variantMODERATE"]
["G01222","NC_000962",249522,"T","C","1034.5","37.0","1.00","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",249522,"T","C","6836.92","217.0","0.99","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",249522,"T","C","10701.9","352.0","1.00","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",249522,"T","C","2549.48","82.0","0.99","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",249522,"T","C","2654.06","89.0","1.00","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",249522,"T","C","3204.08","109.0","1.00","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",249522,"T","C",{"v":940845,"d":"940,845"},"34.0","1.00","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",249522,"T","C","1183.84","39.0","1.00","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",249522,"T","C","5294.85","159.0","1.00","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",249522,"T","C","5272.39","158.0","1.00","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",249522,"T","C",{"v":447892,"d":"447,892"},"16.0","1.00","Nonsyn","gtg","gCg","485T>C","Val162Ala",null,"fig|83332.12.peg.236","Rv0209",null,"FIG032248: hypothetical protein","tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33)","FIG033897: hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",251575,"G","A",{"v":918338,"d":"918,338"},"35.0","1.00","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
["G01491","NC_000962",251575,"G","A","5390.53","170.0","1.00","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
["G01492","NC_000962",251575,"G","A","10438.3","335.0","0.99","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
["G01498","NC_000962",251575,"G","A","3153.88","101.0","0.99","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
[7011,"NC_000962",251575,"G","A","2598.04","87.0","0.99","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
[7739,"NC_000962",251575,"G","A","2554.29","86.0","1.00","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
[58,"NC_000962",251575,"G","A","1173.2","38.0","1.00","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
[64,"NC_000962",251575,"G","A",{"v":763476,"d":"763,476"},"26.0","1.00","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
["MP2","NC_000962",251575,"G","A","5987.33","176.0","1.00","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
["MP1","NC_000962",251575,"G","A","5668.29","165.0","1.00","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
[54,"NC_000962",251575,"G","A","1373.59","47.0","1.00","Nonsyn","gcg","Acg","1456G>A","Ala486Thr",null,"fig|83332.12.peg.237","Rv0210",null,"FIG033897: hypothetical protein","FIG032248: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","missense_variantMODERATE"]
["G01222","NC_000962",251669,"T","C","1281.01","41.0","0.95",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
["G01491","NC_000962",251669,"T","C","5259.62","164.0","1.00",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
["G01492","NC_000962",251669,"T","C","10979.6","352.0","0.99",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
["G01498","NC_000962",251669,"T","C","3711.14","119.0","0.99",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
[7011,"NC_000962",251669,"T","C","3425.69","103.0","1.00",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
[7739,"NC_000962",251669,"T","C","3483.2","105.0","1.00",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
[58,"NC_000962",251669,"T","C","6545.76","199.0","0.98",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
[64,"NC_000962",251669,"T","C","4518.79","135.0","0.98",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
["MP2","NC_000962",251669,"T","C","5652.4","165.0","1.00",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
["MP1","NC_000962",251669,"T","C","5805.9","171.0","1.00",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionMODIFIER"]
[54,"NC_000962",251669,"T","C","17734.8","526.0","0.98",{"$nulls":10},"FIG033897: hypothetical protein","Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)","intergenic_regionLOW"]
["G01222","NC_000962",256182,"G","C","1160.44","37.0","1.00","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
["G01491","NC_000962",256182,"G","C","3856.58","125.0","0.99","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
["G01492","NC_000962",256182,"G","C","8507.2","285.0","0.97","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
["G01498","NC_000962",256182,"G","C","1918.01","65.0","1.00","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
[7011,"NC_000962",256182,"G","C","2373.9","82.0","1.00","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
[7739,"NC_000962",256182,"G","C","2537.77","92.0","1.00","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
[58,"NC_000962",256182,"G","C","5112.94","161.0","1.00","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
[64,"NC_000962",256182,"G","C","4903.72","155.0","0.99","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
["MP2","NC_000962",256182,"G","C","8224.69","249.0","1.00","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
["MP1","NC_000962",256182,"G","C","8395.49","251.0","1.00","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
[54,"NC_000962",256182,"G","C","5143.82","173.0","0.98","Nonsyn","ggc","gCc","23G>C","Gly8Ala",null,"fig|83332.12.peg.241","Rv0214","fadD4","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD4","POSSIBLE METHYLTRANSFERASE CLUSTERED WITH NadR","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","missense_variantMODERATE"]
["G01222","NC_000962",258902,"C","A",{"v":299601,"d":"299,601"},"12.0","1.00",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
["G01491","NC_000962",258902,"C","A","3894.16","122.0","0.99",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
["G01492","NC_000962",258902,"C","A","10777.4","345.0","0.99",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
["G01498","NC_000962",258902,"C","A","2197.83","72.0","1.00",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
[7011,"NC_000962",258902,"C","A","3490.61","113.0","0.98",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
[7739,"NC_000962",258902,"C","A","3180.13","98.0","1.00",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
[58,"NC_000962",258902,"C","A","2945.41","90.0","1.00",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
[64,"NC_000962",258902,"C","A","2986.29","90.0","0.99",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
["MP2","NC_000962",258902,"C","A","7317.95","215.0","1.00",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
["MP1","NC_000962",258902,"C","A","6626.6","198.0","1.00",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
[54,"NC_000962",258902,"C","A","3314.27","110.0","0.99",{"$nulls":10},"Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE3","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","intergenic_regionMODIFIER"]
["G01222","NC_000962",260282,"G","T","1053.34","43.0","0.98","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",260282,"G","T","4695.48","147.0","0.99","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",260282,"G","T","9874.04","328.0","0.98","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",260282,"G","T","2920.47","101.0","0.98","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",260282,"G","T","2571.73","92.0","0.99","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",260282,"G","T","2138.86","82.0","1.00","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",260282,"G","T",{"v":712169,"d":"712,169"},"24.0","1.00","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",260282,"G","T","1088.03","38.0","1.00","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",260282,"G","T","4422.1","133.0","1.00","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",260282,"G","T","3353.75","103.0","1.00","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",260282,"G","T","1779.87","64.0","0.97","Nonsyn","ccg","Acg","550C>A","Pro184Thr",null,"fig|83332.12.peg.244","Rv0217c","lipW","Esterase LipW","2-methylfumaryl-CoA hydratase (EC 4.2.1.148)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",261869,"T","C","1193.85","42.0","0.98","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
["G01491","NC_000962",261869,"T","C","4699.24","149.0","1.00","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
["G01492","NC_000962",261869,"T","C","8767.8","296.0","0.99","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
["G01498","NC_000962",261869,"T","C","1991.14","70.0","1.00","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
[7011,"NC_000962",261869,"T","C","2268.44","79.0","1.00","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
[7739,"NC_000962",261869,"T","C","1323.8","48.0","1.00","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
[58,"NC_000962",261869,"T","C",{"v":917709,"d":"917,709"},"28.0","0.97","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
[64,"NC_000962",261869,"T","C","1902.06","66.0","0.93","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
["MP2","NC_000962",261869,"T","C","2952.0","95.0","1.00","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
["MP1","NC_000962",261869,"T","C","2001.41","67.0","1.00","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
[54,"NC_000962",261869,"T","C","3677.61","126.0","0.94","Nonsyn","tgt","Cgt","946T>C","Cys316Arg",null,"fig|83332.12.peg.246","Rv0218",null,"oxidoreductase, molybdopterin binding protein","hypothetical protein","Putative transmembrane protein","missense_variantMODERATE"]
["G01222","NC_000962",266743,"CC","CGC","734.31","23.0","1.00","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantHIGH"]
["G01491","NC_000962",266743,"CC","CGC","2550.68","85.0","1.00","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantHIGH"]
["G01492","NC_000962",266743,"CC","CGC","6844.74","231.0","0.97","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantHIGH"]
["G01498","NC_000962",266743,"CC","CGC","1719.36","58.0","0.97","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantHIGH"]
[7011,"NC_000962",266743,"CC","CGC","1818.93","61.0","0.97","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantHIGH"]
[7739,"NC_000962",266743,"CC","CGC","2152.12","72.0","0.94","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantHIGH"]
[58,"NC_000962",266743,"CC","CGC",{"v":516532,"d":"516,532"},"17.0","0.89","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantHIGH"]
[64,"NC_000962",266743,"CC","CGC",{"v":992873,"d":"992,873"},"34.0","0.87","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantLOW"]
["MP2","NC_000962",266743,"CC","CGC","3447.55","109.0","0.98","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantHIGH"]
["MP1","NC_000962",266743,"CC","CGC","3724.96","120.0","0.98","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantHIGH"]
[54,"NC_000962",266743,"CC","CGC","3347.12","104.0","0.91","Insertion","ggc","GCGc","1021_1022insC","Gly341_Tyr342fs","yes","fig|83332.12.peg.251","Rv0223c",null,"Aldehyde dehydrogenase (EC 1.2.1.3)","Enoyl-CoA hydratase (EC 4.2.1.17)","SAM-dependent methyltransferase","frameshift_variantLOW"]
["G01222","NC_000962",272161,"C","A",{"v":620422,"d":"620,422"},"20.0","0.95","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
["G01491","NC_000962",272161,"C","A","4693.06","151.0","0.96","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
["G01492","NC_000962",272161,"C","A","11629.9","378.0","0.97","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
["G01498","NC_000962",272161,"C","A","2296.93","85.0","0.91","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
[7011,"NC_000962",272161,"C","A","2799.3","93.0","0.98","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
[7739,"NC_000962",272161,"C","A","2743.72","87.0","0.98","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
[58,"NC_000962",272161,"C","A",{"v":779139,"d":"779,139"},"24.0","1.00","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
[64,"NC_000962",272161,"C","A",{"v":971119,"d":"971,119"},"32.0","1.00","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
["MP2","NC_000962",272161,"C","A","7348.91","218.0","1.00","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
["MP1","NC_000962",272161,"C","A","7783.13","229.0","0.99","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
[54,"NC_000962",272161,"C","A",{"v":445573,"d":"445,573"},"14.0","1.00","Nonsyn","gtc","Ttc","679G>T","Val227Phe",null,"fig|83332.12.peg.255","Rv0227c",null,"FIG01123246: hypothetical protein","Membrane protein","Uncharacterized acyltransferase Rv0228","missense_variantMODERATE"]
["G01222","NC_000962",273558,"C","G","1260.75","41.0","1.00","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
["G01491","NC_000962",273558,"C","G","5776.1","184.0","0.98","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
["G01492","NC_000962",273558,"C","G","10061.5","310.0","0.98","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
["G01498","NC_000962",273558,"C","G","1810.87","62.0","0.97","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
[7011,"NC_000962",273558,"C","G","1985.14","64.0","1.00","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
[7739,"NC_000962",273558,"C","G","1977.65","65.0","1.00","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
[58,"NC_000962",273558,"C","G","3469.86","107.0","0.97","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
[64,"NC_000962",273558,"C","G","3725.68","116.0","0.97","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
["MP2","NC_000962",273558,"C","G","7438.22","216.0","1.00","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
["MP1","NC_000962",273558,"C","G","5779.28","172.0","1.00","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
[54,"NC_000962",273558,"C","G","4551.36","187.0","0.80","Synon","tcc","tcG","444C>G","Ser148Ser",null,"fig|83332.12.peg.256","Rv0228",null,"Uncharacterized acyltransferase Rv0228","FIG01123246: hypothetical protein","Toxin 1, PIN domain","synonymous_variantLOW"]
["G01222","NC_000962",275367,"G","T","1046.22","33.0","1.00","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
["G01491","NC_000962",275367,"G","T","5333.65","170.0","0.98","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
["G01492","NC_000962",275367,"G","T","10830.6","358.0","0.98","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
["G01498","NC_000962",275367,"G","T","2200.45","71.0","0.96","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
[7011,"NC_000962",275367,"G","T","2602.17","84.0","1.00","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
[7739,"NC_000962",275367,"G","T","2391.53","74.0","1.00","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
[58,"NC_000962",275367,"G","T","1216.09","46.0","0.92","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
[64,"NC_000962",275367,"G","T","1450.62","48.0","1.00","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
["MP2","NC_000962",275367,"G","T","6978.18","205.0","1.00","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
["MP1","NC_000962",275367,"G","T","7833.6","231.0","1.00","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
[54,"NC_000962",275367,"G","T","16464.8","512.0","0.99","Nonsyn","gac","gaA","597C>A","AsMP199Glu",null,"fig|83332.12.peg.259","Rv0230c","php","Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) (EC 3.1.8.1)","Antitoxin to Toxin 1, PIN domain","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE4","missense_variantMODERATE"]
["G01222","NC_000962",278681,"C","G",{"v":930172,"d":"930,172"},"29.0","1.00","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
["G01491","NC_000962",278681,"C","G","5853.43","185.0","0.98","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
["G01492","NC_000962",278681,"C","G","10913.1","352.0","1.00","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
["G01498","NC_000962",278681,"C","G","2744.06","88.0","0.99","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
[7011,"NC_000962",278681,"C","G","3538.86","114.0","1.00","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
[7739,"NC_000962",278681,"C","G","2965.49","93.0","1.00","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
[58,"NC_000962",278681,"C","G","4865.25","149.0","0.99","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
[64,"NC_000962",278681,"C","G","5056.11","164.0","0.96","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
["MP2","NC_000962",278681,"C","G","7772.65","227.0","1.00","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
["MP1","NC_000962",278681,"C","G","7991.47","235.0","1.00","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
[54,"NC_000962",278681,"C","G","4386.76","140.0","0.98","Nonsyn","cat","Gat","97C>G","His33Asp",null,"fig|83332.12.peg.262","Rv0233","nrdB","Ribonucleoside-diphosphate reductase (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","missense_variantMODERATE"]
["G01222","NC_000962",282036,"G","T",{"v":747889,"d":"747,889"},"24.0","1.00","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
["G01491","NC_000962",282036,"G","T","3858.32","126.0","0.97","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
["G01492","NC_000962",282036,"G","T","9742.77","321.0","0.97","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
["G01498","NC_000962",282036,"G","T","3350.13","113.0","0.97","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
[7011,"NC_000962",282036,"G","T","3015.57","96.0","0.98","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
[7739,"NC_000962",282036,"G","T","3389.79","108.0","0.98","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
[58,"NC_000962",282036,"G","T","1954.64","61.0","0.98","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
[64,"NC_000962",282036,"G","T","1161.59","39.0","0.95","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
["MP2","NC_000962",282036,"G","T","7933.45","230.0","1.00","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
["MP1","NC_000962",282036,"G","T","7184.93","211.0","1.00","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
[54,"NC_000962",282036,"G","T","5217.71","168.0","1.00","Synon","ggc","ggA","579C>A","Gly193Gly",null,"fig|83332.12.peg.264","Rv0235c",null,"putative membrane protein","Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24)","Arabinofuranosyltransferase AftD","synonymous_variantLOW"]
["G01222","NC_000962",283614,"T","C","1417.15","48.0","1.00","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
["G01491","NC_000962",283614,"T","C","6554.28","207.0","1.00","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
["G01492","NC_000962",283614,"T","C","10993.7","356.0","0.99","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
["G01498","NC_000962",283614,"T","C","2167.84","69.0","1.00","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
[7011,"NC_000962",283614,"T","C","2390.79","85.0","1.00","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
[7739,"NC_000962",283614,"T","C","2125.45","74.0","0.99","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
[58,"NC_000962",283614,"T","C",{"v":491293,"d":"491,293"},"17.0","1.00","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
[64,"NC_000962",283614,"T","C",{"v":605187,"d":"605,187"},"20.0","1.00","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
["MP2","NC_000962",283614,"T","C","3693.77","108.0","1.00","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
["MP1","NC_000962",283614,"T","C","1729.92","53.0","1.00","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
[54,"NC_000962",283614,"T","C",{"v":207383,"d":"207,383"},"14.0","0.70","Nonsyn","agc","Ggc","3238A>G","Ser1080Gly",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","missense_variantMODERATE"]
["G01222","NC_000962",285772,"A","C","1716.88","54.0","1.00","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["G01491","NC_000962",285772,"A","C","5344.06","169.0","0.98","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["G01492","NC_000962",285772,"A","C","9334.13","303.0","0.98","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["G01498","NC_000962",285772,"A","C","2564.17","90.0","0.97","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[7011,"NC_000962",285772,"A","C","1873.09","59.0","1.00","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[7739,"NC_000962",285772,"A","C","1569.75","51.0","1.00","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[58,"NC_000962",285772,"A","C",{"v":160565,"d":"160,565"},"6.0","0.86","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[64,"NC_000962",285772,"A","C",{"v":216582,"d":"216,582"},"8.0","0.89","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["MP2","NC_000962",285772,"A","C","3325.21","98.0","1.00","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["MP1","NC_000962",285772,"A","C","1328.6","40.0","1.00","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[54,"NC_000962",285772,"A","C","1437.05","55.0","0.95","Synon","cct","ccG","1080T>G","Pro360Pro",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["G01222","NC_000962",285871,"A","G","1737.71","60.0","1.00","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["G01491","NC_000962",285871,"A","G","5240.49","165.0","1.00","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["G01492","NC_000962",285871,"A","G","9215.32","302.0","0.99","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["G01498","NC_000962",285871,"A","G","2975.31","103.0","0.99","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[7011,"NC_000962",285871,"A","G","2078.49","78.0","1.00","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[7739,"NC_000962",285871,"A","G","1880.52","68.0","1.00","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[58,"NC_000962",285871,"A","G",{"v":731049,"d":"731,049"},"28.0","1.00","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[64,"NC_000962",285871,"A","G",{"v":832872,"d":"832,872"},"32.0","0.86","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["MP2","NC_000962",285871,"A","G","2558.69","75.0","1.00","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["MP1","NC_000962",285871,"A","G","1148.29","35.0","1.00","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
[54,"NC_000962",285871,"A","G","3668.29","130.0","0.99","Synon","gtt","gtC","981T>C","Val327Val",null,"fig|83332.12.peg.265","Rv0236c",null,"Arabinofuranosyltransferase AftD","putative membrane protein","FIG01361580: secreted protein","synonymous_variantLOW"]
["G01222","NC_000962",289435,"G","T","619.76","19.0","1.00","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
["G01491","NC_000962",289435,"G","T","3461.4","110.0","0.99","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
["G01492","NC_000962",289435,"G","T","6725.27","222.0","0.98","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
["G01498","NC_000962",289435,"G","T","1891.43","63.0","0.97","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
[7011,"NC_000962",289435,"G","T","2417.18","86.0","0.99","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
[7739,"NC_000962",289435,"G","T","2360.79","84.0","1.00","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
[58,"NC_000962",289435,"G","T","1518.35","51.0","0.98","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
[64,"NC_000962",289435,"G","T","2032.73","65.0","1.00","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
["MP2","NC_000962",289435,"G","T","7716.2","232.0","1.00","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
["MP1","NC_000962",289435,"G","T","8047.71","247.0","0.98","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
[54,"NC_000962",289435,"G","T","4095.57","138.0","0.99","Nonsyn","gct","Tct","91G>T","Ala31Ser",null,"fig|83332.12.peg.270","Rv0240",null,"toxin VapC24 @ Toxin 1, PIN domain","antitoxin VapB24 @ Antitoxin to Toxin 1, PIN domain","Probable (3R)-hydroxyacyl-CoA dehydratase HtdX","missense_variantMODERATE"]
["G01222","NC_000962",301687,"C","T","1010.69","33.0","1.00",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
["G01491","NC_000962",301687,"C","T","3640.41","113.0","0.98",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
["G01492","NC_000962",301687,"C","T","8904.54","281.0","0.99",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
["G01498","NC_000962",301687,"C","T","1740.65","55.0","0.98",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
[7011,"NC_000962",301687,"C","T","2776.09","87.0","1.00",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
[7739,"NC_000962",301687,"C","T","2768.08","85.0","1.00",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
[58,"NC_000962",301687,"C","T","5894.11","181.0","1.00",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
[64,"NC_000962",301687,"C","T","3076.65","96.0","1.00",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
["MP2","NC_000962",301687,"C","T","6521.6","189.0","1.00",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
["MP1","NC_000962",301687,"C","T","6797.32","201.0","1.00",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
[54,"NC_000962",301687,"C","T","31830.6","933.0","1.00",{"$nulls":10},"putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)","hypothetical protein Rv0250c","intergenic_regionMODIFIER"]
["G01222","NC_000962",303039,"C","T",{"v":937846,"d":"937,846"},"33.0","1.00","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01491","NC_000962",303039,"C","T","5162.09","165.0","0.99","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01492","NC_000962",303039,"C","T","11747.9","375.0","0.99","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01498","NC_000962",303039,"C","T","2560.33","85.0","0.96","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[7011,"NC_000962",303039,"C","T","3059.82","106.0","1.00","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[7739,"NC_000962",303039,"C","T","2930.82","95.0","0.99","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[58,"NC_000962",303039,"C","T",{"v":904018,"d":"904,018"},"30.0","0.97","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[64,"NC_000962",303039,"C","T","963.93","32.0","1.00","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["MP2","NC_000962",303039,"C","T","7649.41","222.0","1.00","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["MP1","NC_000962",303039,"C","T","7207.86","211.0","1.00","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[54,"NC_000962",303039,"C","T","1153.22","39.0","0.97","Synon","ggc","ggT","123C>T","Gly41Gly",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01222","NC_000962",304902,"C","T","124.52","6.0","0.86","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01491","NC_000962",304902,"C","T","2203.95","72.0","0.96","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01492","NC_000962",304902,"C","T","5581.98","191.0","0.93","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01498","NC_000962",304902,"C","T",{"v":901118,"d":"901,118"},"37.0","0.84","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[7011,"NC_000962",304902,"C","T","3697.19","116.0","1.00","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[7739,"NC_000962",304902,"C","T","3151.85","97.0","0.99","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[58,"NC_000962",304902,"C","T","2750.86","82.0","1.00","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[64,"NC_000962",304902,"C","T","2139.63","67.0","1.00","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["MP2","NC_000962",304902,"C","T","9134.95","267.0","1.00","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["MP1","NC_000962",304902,"C","T","8331.52","248.0","1.00","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[54,"NC_000962",304902,"C","T","4628.55","142.0","1.00","Synon","cgc","cgT","1986C>T","Arg662Arg",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01222","NC_000962",304923,"A","G",{"v":142348,"d":"142,348"},"6.0","1.00","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01491","NC_000962",304923,"A","G","2332.57","73.0","1.00","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01492","NC_000962",304923,"A","G","7160.71","233.0","1.00","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01498","NC_000962",304923,"A","G","1162.46","41.0","1.00","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[7011,"NC_000962",304923,"A","G","3816.76","119.0","1.00","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[7739,"NC_000962",304923,"A","G","3058.5","97.0","1.00","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[58,"NC_000962",304923,"A","G","3411.25","104.0","0.99","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[64,"NC_000962",304923,"A","G","3566.81","111.0","0.99","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["MP2","NC_000962",304923,"A","G","9133.04","269.0","1.00","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["MP1","NC_000962",304923,"A","G","8005.77","236.0","1.00","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
[54,"NC_000962",304923,"A","G","5034.7","153.0","0.99","Synon","aaa","aaG","2007A>G","Lys669Lys",null,"fig|83332.12.peg.282","Rv0252","nirB","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Heat shock protein HsMP20","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","synonymous_variantLOW"]
["G01222","NC_000962",305622,"C","T","1326.47","42.0","1.00","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
["G01491","NC_000962",305622,"C","T","4856.98","152.0","0.99","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
["G01492","NC_000962",305622,"C","T","10834.2","344.0","0.99","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
["G01498","NC_000962",305622,"C","T","2441.13","86.0","0.92","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
[7011,"NC_000962",305622,"C","T","3457.57","118.0","0.98","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
[7739,"NC_000962",305622,"C","T","2610.96","92.0","0.94","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
[58,"NC_000962",305622,"C","T",{"v":287625,"d":"287,625"},"9.0","1.00","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantMODERATE"]
[64,"NC_000962",305622,"C","T",{"v":394492,"d":"394,492"},"14.0","0.93","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
["MP2","NC_000962",305622,"C","T","8838.62","260.0","1.00","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
["MP1","NC_000962",305622,"C","T","9324.57","276.0","1.00","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
[54,"NC_000962",305622,"C","T",{"v":260838,"d":"260,838"},"8.0","1.00","Nonsyn","gct","gTt","170C>T","Ala57Val",null,"fig|83332.12.peg.283","Rv0253","nirD","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)","missense_variantLOW"]
["G01222","NC_000962",309765,"C","T","1033.87","32.0","1.00",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",309765,"C","T","5484.78","171.0","1.00",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",309765,"C","T","12206.8","393.0","0.98",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",309765,"C","T","3592.91","114.0","1.00",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",309765,"C","T","3414.06","108.0","0.99",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",309765,"C","T","2733.02","87.0","0.99",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
[58,"NC_000962",309765,"C","T","1620.4","50.0","1.00",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",309765,"C","T","2078.95","67.0","1.00",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",309765,"C","T","6206.89","190.0","1.00",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",309765,"C","T","7137.14","214.0","0.99",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",309765,"C","T","1767.5","59.0","0.95",{"$nulls":10},"PPE family protein, PPW subgroup ","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",310973,"G","A",{"v":541895,"d":"541,895"},"19.0","1.00","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["G01491","NC_000962",310973,"G","A","4519.26","145.0","0.99","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["G01492","NC_000962",310973,"G","A","10252.7","337.0","1.00","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["G01498","NC_000962",310973,"G","A","2167.56","69.0","1.00","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[7011,"NC_000962",310973,"G","A","2686.73","88.0","1.00","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[7739,"NC_000962",310973,"G","A","3101.77","101.0","1.00","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[58,"NC_000962",310973,"G","A",{"v":402962,"d":"402,962"},"14.0","0.93","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[64,"NC_000962",310973,"G","A","1324.41","45.0","1.00","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["MP2","NC_000962",310973,"G","A","8018.91","239.0","1.00","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["MP1","NC_000962",310973,"G","A","6712.27","205.0","1.00","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[54,"NC_000962",310973,"G","A","6151.29","219.0","1.00","Nonsyn","gcg","gTg","545C>T","Ala182Val",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["G01222","NC_000962",311493,"C","T",{"v":833789,"d":"833,789"},"27.0","1.00","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["G01491","NC_000962",311493,"C","T","4552.45","149.0","0.94","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["G01492","NC_000962",311493,"C","T","10606.1","348.0","0.97","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["G01498","NC_000962",311493,"C","T","2207.54","80.0","0.93","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[7011,"NC_000962",311493,"C","T","3519.29","113.0","0.99","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[7739,"NC_000962",311493,"C","T","2595.15","82.0","0.98","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[58,"NC_000962",311493,"C","T","1857.37","59.0","1.00","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[64,"NC_000962",311493,"C","T","1660.59","56.0","0.97","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["MP2","NC_000962",311493,"C","T","8735.64","259.0","1.00","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["MP1","NC_000962",311493,"C","T","8891.42","270.0","0.99","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
[54,"NC_000962",311493,"C","T",{"v":964211,"d":"964,211"},"31.0","1.00","Nonsyn","gga","Aga","25G>A","Gly9Arg",null,"fig|83332.12.peg.289","Rv0259c",null,"Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","hypothetical protein Rv0258c","Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","missense_variantMODERATE"]
["G01222","NC_000962",311613,"G","T",{"v":883733,"d":"883,733"},"27.0","0.96","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
["G01491","NC_000962",311613,"G","T","3189.15","98.0","1.00","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
["G01492","NC_000962",311613,"G","T","8130.38","261.0","1.00","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
["G01498","NC_000962",311613,"G","T","2234.05","74.0","1.00","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
[7011,"NC_000962",311613,"G","T","3006.35","98.0","1.00","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
[7739,"NC_000962",311613,"G","T","3852.55","127.0","0.99","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
[58,"NC_000962",311613,"G","T",{"v":966584,"d":"966,584"},"36.0","1.00","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
[64,"NC_000962",311613,"G","T",{"v":657528,"d":"657,528"},"25.0","0.93","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
["MP2","NC_000962",311613,"G","T","9007.99","261.0","1.00","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
["MP1","NC_000962",311613,"G","T","9781.9","285.0","1.00","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
[54,"NC_000962",311613,"G","T","2725.07","96.0","0.99","Synon","gtc","gtA","1047C>A","Val349Val",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","synonymous_variantLOW"]
["G01222","NC_000962",311728,"C","T","656.04","21.0","1.00","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
["G01491","NC_000962",311728,"C","T","3168.56","100.0","0.96","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
["G01492","NC_000962",311728,"C","T","7247.37","243.0","0.98","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
["G01498","NC_000962",311728,"C","T","1806.06","63.0","0.94","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
[7011,"NC_000962",311728,"C","T","3509.64","112.0","1.00","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
[7739,"NC_000962",311728,"C","T","3532.53","110.0","0.97","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
[58,"NC_000962",311728,"C","T","1537.19","53.0","1.00","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
[64,"NC_000962",311728,"C","T","1452.43","44.0","1.00","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
["MP2","NC_000962",311728,"C","T","8290.89","239.0","1.00","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
["MP1","NC_000962",311728,"C","T","8996.15","263.0","1.00","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
[54,"NC_000962",311728,"C","T","1760.98","56.0","1.00","Nonsyn","gga","gAa","932G>A","Gly311Glu",null,"fig|83332.12.peg.290","Rv0260c",null,"Putative uroporphyrinogen-III synthase (EC 4.2.1.75), related to YjjA (in BS) / Response regulator","Sirohydrochlorin ferrochelatase SirB (EC 4.99.1.4)","Uncharacterized MFS-type transporter MSMEG_0433, NarK/U family","missense_variantMODERATE"]
["G01222","NC_000962",323306,"A","G",{"v":930314,"d":"930,314"},"32.0","1.00",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionMODERATE"]
["G01491","NC_000962",323306,"A","G","4979.7","155.0","1.00",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionLOW"]
["G01492","NC_000962",323306,"A","G","7977.49","262.0","0.98",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionLOW"]
["G01498","NC_000962",323306,"A","G","1970.77","62.0","1.00",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionLOW"]
[7011,"NC_000962",323306,"A","G","3849.85","119.0","0.98",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionMODERATE"]
[7739,"NC_000962",323306,"A","G","3894.46","118.0","1.00",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionMODERATE"]
[58,"NC_000962",323306,"A","G","6198.86","183.0","0.97",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionMODERATE"]
[64,"NC_000962",323306,"A","G","3350.02","98.0","1.00",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionLOW"]
["MP2","NC_000962",323306,"A","G","6652.83","196.0","1.00",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionMODERATE"]
["MP1","NC_000962",323306,"A","G","7389.75","219.0","1.00",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionMODIFIER"]
[54,"NC_000962",323306,"A","G","7600.6","230.0","0.98",{"$nulls":10},"hypothetical protein","ATP-dependent DNA ligase (EC 6.5.1.1)","intergenic_regionLOW"]
["G01222","NC_000962",325505,"T","C",{"v":962073,"d":"962,073"},"30.0","1.00","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
["G01491","NC_000962",325505,"T","C","4866.4","149.0","1.00","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
["G01492","NC_000962",325505,"T","C","12261.4","388.0","1.00","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
["G01498","NC_000962",325505,"T","C","2609.07","83.0","0.99","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
[7011,"NC_000962",325505,"T","C","3561.12","108.0","1.00","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
[7739,"NC_000962",325505,"T","C","2965.45","93.0","0.98","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
[58,"NC_000962",325505,"T","C","4748.57","150.0","0.99","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
[64,"NC_000962",325505,"T","C","2258.44","71.0","0.97","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantMODERATE"]
["MP2","NC_000962",325505,"T","C","7964.16","232.0","1.00","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
["MP1","NC_000962",325505,"T","C","8258.96","239.0","1.00","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
[54,"NC_000962",325505,"T","C","20829.2","628.0","0.99","Synon","gtt","gtC","939T>C","Val313Val",null,"fig|83332.12.peg.301","Rv0270","fadD2","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD2","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","synonymous_variantLOW"]
["G01222","NC_000962",328916,"G","T","1038.51","33.0","0.97","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
["G01491","NC_000962",328916,"G","T","5602.49","181.0","0.96","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
["G01492","NC_000962",328916,"G","T","12344.9","420.0","0.97","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
["G01498","NC_000962",328916,"G","T","2801.59","101.0","0.90","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
[7011,"NC_000962",328916,"G","T","3121.24","107.0","0.98","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
[7739,"NC_000962",328916,"G","T","2950.23","103.0","0.98","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
[58,"NC_000962",328916,"G","T",{"v":281282,"d":"281,282"},"9.0","1.00","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantMODIFIER"]
[64,"NC_000962",328916,"G","T","333.88","12.0","0.92","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
["MP2","NC_000962",328916,"G","T","7272.07","212.0","1.00","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
["MP1","NC_000962",328916,"G","T","7272.52","215.0","1.00","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
[54,"NC_000962",328916,"G","T",{"v":330385,"d":"330,385"},"11.0","1.00","Nonsyn","ccc","Acc","793C>A","Pro265Thr",null,"fig|83332.12.peg.303","Rv0272c",null,"hypothetical protein Rv0272c","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE6","Transcriptional regulator, AcrR family","missense_variantHIGH"]
["G01222","NC_000962",331588,"G","A",{"v":325979,"d":"325,979"},"10.0","1.00","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",331588,"G","A","4199.14","138.0","0.96","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",331588,"G","A","10560.7","337.0","0.98","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",331588,"G","A","2779.83","88.0","1.00","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",331588,"G","A","1996.05","68.0","1.00","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",331588,"G","A","1721.56","62.0","1.00","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",331588,"G","A",{"v":635984,"d":"635,984"},"23.0","0.96","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",331588,"G","A","1441.68","47.0","1.00","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantLOW"]
["MP2","NC_000962",331588,"G","A","4778.98","139.0","0.99","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantMODIFIER"]
["MP1","NC_000962",331588,"G","A","5728.42","168.0","0.99","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",331588,"G","A","1720.62","57.0","1.00","Nonsyn","tcg","tTg","71C>T","Ser24Leu",null,"fig|83332.12.peg.306","Rv0275c",null,"Transcriptional regulator, AcrR family","Glyoxalase family protein","hypothetical protein","missense_variantLOW"]
["G01222","NC_000962",333212,"G","C","1380.82","47.0","1.00","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
["G01491","NC_000962",333212,"G","C","5217.24","163.0","1.00","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
["G01492","NC_000962",333212,"G","C","15017.4","474.0","0.98","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
["G01498","NC_000962",333212,"G","C","5857.73","184.0","0.98","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
[7011,"NC_000962",333212,"G","C","3704.4","117.0","1.00","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
[7739,"NC_000962",333212,"G","C","3202.45","101.0","0.99","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
[58,"NC_000962",333212,"G","C","3272.98","98.0","0.99","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
[64,"NC_000962",333212,"G","C","1592.8","49.0","1.00","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantMODERATE"]
["MP2","NC_000962",333212,"G","C","7036.97","206.0","1.00","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
["MP1","NC_000962",333212,"G","C","5819.51","172.0","1.00","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
[54,"NC_000962",333212,"G","C","14671.4","475.0","1.00","Nonsyn","acg","aGg","122C>G","Thr41Arg",null,"fig|83332.12.peg.309",null,null,"hypothetical protein","toxin VapC25 @ Toxin 1, PIN domain","PE_PGRS family protein ","missense_variantLOW"]
["G01222","NC_000962",333394,"C","G",{"v":969195,"d":"969,195"},"31.0","0.97",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODIFIER"]
["G01491","NC_000962",333394,"C","G","6607.96","212.0","1.00",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODERATE"]
["G01492","NC_000962",333394,"C","G","16597.1","524.0","1.00",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODIFIER"]
["G01498","NC_000962",333394,"C","G","7715.18","246.0","1.00",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODERATE"]
[7011,"NC_000962",333394,"C","G","2634.77","83.0","1.00",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODIFIER"]
[7739,"NC_000962",333394,"C","G","2302.78","72.0","1.00",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODIFIER"]
[58,"NC_000962",333394,"C","G","3442.71","105.0","1.00",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODIFIER"]
[64,"NC_000962",333394,"C","G","2153.93","67.0","1.00",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODIFIER"]
["MP2","NC_000962",333394,"C","G","4770.75","141.0","1.00",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODIFIER"]
["MP1","NC_000962",333394,"C","G","4055.2","121.0","1.00",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODIFIER"]
[54,"NC_000962",333394,"C","G","4555.71","141.0","0.99",{"$nulls":10},"hypothetical protein","PE_PGRS family protein ","intergenic_regionMODIFIER"]
["G01222","NC_000962",333672,"CAA","CA",{"v":496098,"d":"496,098"},"22.0","0.85","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
["G01491","NC_000962",333672,"CAA","CA","6640.44","235.0","0.98","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
["G01492","NC_000962",333672,"CAA","CA","12723.3","445.0","0.96","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
["G01498","NC_000962",333672,"CAA","CA","5808.92","213.0","0.96","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
[7011,"NC_000962",333672,"CAA","CA",{"v":520235,"d":"520,235"},"28.0","0.97","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
[7739,"NC_000962",333672,"CAA","CA",{"v":275893,"d":"275,893"},"18.0","1.00","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
[58,"NC_000962",333672,"CAA","CA","424.24","19.0","0.95","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
[64,"NC_000962",333672,"CAA","CA",{"v":154752,"d":"154,752"},"9.0","0.90","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
["MP2","NC_000962",333672,"CAA","CA",{"v":717481,"d":"717,481"},"23.0","0.92","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
["MP1","NC_000962",333672,"CAA","CA",{"v":507479,"d":"507,479"},"16.0","0.84","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantMODIFIER"]
[54,"NC_000962",333672,"CAA","CA","5620.31","234.0","0.96","Deletion","ggttgc","ggTGc","2637delT","Gly879fs","yes","fig|83332.12.peg.310","Rv0278c","PE_PGRS3","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","frameshift_variantHIGH"]
["G01222","NC_000962",342146,"A","C",{"v":651748,"d":"651,748"},"21.0","1.00",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
["G01491","NC_000962",342146,"A","C","6346.2","194.0","0.99",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
["G01492","NC_000962",342146,"A","C","14884.6","474.0","0.99",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
["G01498","NC_000962",342146,"A","C","5642.48","178.0","0.99",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
[7011,"NC_000962",342146,"A","C","2753.41","97.0","1.00",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
[7739,"NC_000962",342146,"A","C","2175.95","73.0","0.99",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
[58,"NC_000962",342146,"A","C","3111.78","105.0","0.95",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
[64,"NC_000962",342146,"A","C","2731.58","92.0","0.94",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
["MP2","NC_000962",342146,"A","C","6371.26","191.0","1.00",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
["MP1","NC_000962",342146,"A","C","6791.23","202.0","1.00",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
[54,"NC_000962",342146,"A","C","15452.2","489.0","0.99",{"$nulls":10},"O-methyltransferase","AAA+ family protein ATPase EccA3, component of Type VII secretion system ESX-3","intergenic_regionMODIFIER"]
["G01222","NC_000962",346275,"C","G",{"v":727064,"d":"727,064"},"24.0","1.00","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
["G01491","NC_000962",346275,"C","G","4513.4","143.0","0.99","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
["G01492","NC_000962",346275,"C","G","10466.2","332.0","1.00","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
["G01498","NC_000962",346275,"C","G","1601.19","55.0","0.98","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
[7011,"NC_000962",346275,"C","G","3234.24","100.0","1.00","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
[7739,"NC_000962",346275,"C","G","2886.68","91.0","1.00","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
[58,"NC_000962",346275,"C","G","2453.4","77.0","0.99","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
[64,"NC_000962",346275,"C","G","2680.34","85.0","0.97","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
["MP2","NC_000962",346275,"C","G","7475.07","218.0","1.00","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
["MP1","NC_000962",346275,"C","G","8267.21","241.0","1.00","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
[54,"NC_000962",346275,"C","G","2184.38","68.0","1.00","Nonsyn","ccg","cGg","476C>G","Pro159Arg",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","missense_variantMODERATE"]
["G01222","NC_000962",348280,"G","T","563.98","20.0","1.00","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
["G01491","NC_000962",348280,"G","T","3467.47","116.0","0.96","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
["G01492","NC_000962",348280,"G","T","7429.56","254.0","0.96","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
["G01498","NC_000962",348280,"G","T","2180.61","78.0","0.93","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
[7011,"NC_000962",348280,"G","T","2497.07","81.0","1.00","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
[7739,"NC_000962",348280,"G","T","2152.54","78.0","0.96","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
[58,"NC_000962",348280,"G","T","2096.0","65.0","1.00","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
[64,"NC_000962",348280,"G","T","2839.45","94.0","0.96","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
["MP2","NC_000962",348280,"G","T","5854.79","178.0","0.99","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
["MP1","NC_000962",348280,"G","T","5873.65","178.0","0.99","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
[54,"NC_000962",348280,"G","T","3124.23","101.0","0.99","Synon","gcg","gcT","2481G>T","Ala827Ala",null,"fig|83332.12.peg.316","Rv0284",null,"FtsK/SpoIIIE family protein EccC3, component of Type VII secretion system ESX-3","Membrane protein EccB3, component of Type VII secretion system ESX-3","PE family protein ","synonymous_variantLOW"]
["G01222","NC_000962",350489,"G","C","1156.93","37.0","1.00","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
["G01491","NC_000962",350489,"G","C","6661.03","203.0","1.00","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
["G01492","NC_000962",350489,"G","C","12434.9","413.0","0.99","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
["G01498","NC_000962",350489,"G","C","4639.25","144.0","1.00","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
[7011,"NC_000962",350489,"G","C","3458.69","109.0","1.00","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
[7739,"NC_000962",350489,"G","C","3644.33","112.0","0.99","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
[58,"NC_000962",350489,"G","C","1195.07","39.0","1.00","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
[64,"NC_000962",350489,"G","C","1322.77","43.0","0.98","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
["MP2","NC_000962",350489,"G","C","5698.35","172.0","0.99","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
["MP1","NC_000962",350489,"G","C","6083.42","186.0","0.99","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
[54,"NC_000962",350489,"G","C","1518.82","49.0","1.00","Synon","gcg","gcC","555G>C","Ala185Ala",null,"fig|83332.12.peg.318","Rv0286","PPE4","PPE family protein, PPW subgroup ","PE family protein ","ESAT-6-like protein EsxG","synonymous_variantLOW"]
["G01222","NC_000962",356528,"A","G","1227.8","38.0","1.00","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODIFIER"]
["G01491","NC_000962",356528,"A","G","5117.61","160.0","1.00","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODIFIER"]
["G01492","NC_000962",356528,"A","G","10520.2","331.0","0.99","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODIFIER"]
["G01498","NC_000962",356528,"A","G","2568.43","86.0","0.99","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODIFIER"]
[7011,"NC_000962",356528,"A","G","1926.79","61.0","1.00","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODERATE"]
[7739,"NC_000962",356528,"A","G","2196.62","73.0","0.97","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODERATE"]
[58,"NC_000962",356528,"A","G","2649.7","86.0","1.00","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODERATE"]
[64,"NC_000962",356528,"A","G","3525.23","114.0","0.96","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODERATE"]
["MP2","NC_000962",356528,"A","G","5817.18","178.0","0.99","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODIFIER"]
["MP1","NC_000962",356528,"A","G","4579.45","139.0","1.00","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODIFIER"]
[54,"NC_000962",356528,"A","G","2053.83","65.0","1.00","Nonsyn","aat","Gat","649A>G","Asn217Asp",null,"fig|83332.12.peg.324","Rv0292",null,"Membrane protein EccE3, component of Type VII secretion system ESX-3","Serine protease mycosin MycP3, component of Type VII secretion system ESX-3","hypothetical protein Rv0293c","missense_variantMODERATE"]
["G01222","NC_000962",367471,"G","A",{"v":318107,"d":"318,107"},"11.0","1.00","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01491","NC_000962",367471,"G","A","4510.5","143.0","0.99","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01492","NC_000962",367471,"G","A","9155.14","302.0","1.00","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01498","NC_000962",367471,"G","A","2013.39","62.0","1.00","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[7011,"NC_000962",367471,"G","A","2007.68","67.0","1.00","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[7739,"NC_000962",367471,"G","A","1751.35","57.0","1.00","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[58,"NC_000962",367471,"G","A","17672.3","546.0","0.99","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[64,"NC_000962",367471,"G","A","12050.1","379.0","0.99","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["MP2","NC_000962",367471,"G","A","5455.41","162.0","1.00","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["MP1","NC_000962",367471,"G","A","5784.66","171.0","0.99","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[54,"NC_000962",367471,"G","A","17758.2","558.0","0.99","Nonsyn","tcc","tTc","5294C>T","Ser1765Phe",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01222","NC_000962",368168,"C","T","1761.26","59.0","0.95","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantLOW"]
["G01491","NC_000962",368168,"C","T","2929.2","96.0","1.00","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantLOW"]
["G01492","NC_000962",368168,"C","T","6326.92","224.0","0.97","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantLOW"]
["G01498","NC_000962",368168,"C","T","3560.73","125.0","0.97","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantLOW"]
[7011,"NC_000962",368168,"C","T","2404.88","78.0","0.99","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantLOW"]
[7739,"NC_000962",368168,"C","T","2501.43","84.0","1.00","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantLOW"]
[58,"NC_000962",368168,"C","T","4509.22","142.0","0.98","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[64,"NC_000962",368168,"C","T","3610.79","122.0","0.97","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["MP2","NC_000962",368168,"C","T","7014.32","229.0","0.97","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantLOW"]
["MP1","NC_000962",368168,"C","T","6978.42","224.0","0.97","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantLOW"]
[54,"NC_000962",368168,"C","T","47499.1","1487.0","0.99","Nonsyn","ggc","Agc","4597G>A","Gly1533Ser",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01222","NC_000962",369506,"C","G","1034.28","36.0","0.97","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01491","NC_000962",369506,"C","G","3418.65","112.0","0.98","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01492","NC_000962",369506,"C","G","8685.19","301.0","0.97","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01498","NC_000962",369506,"C","G","3609.31","142.0","0.89","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[7011,"NC_000962",369506,"C","G","3051.47","96.0","1.00","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[7739,"NC_000962",369506,"C","G","3666.76","114.0","0.99","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[58,"NC_000962",369506,"C","G","4792.36","147.0","0.97","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[64,"NC_000962",369506,"C","G","3451.57","107.0","0.96","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["MP2","NC_000962",369506,"C","G","8044.39","247.0","0.98","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["MP1","NC_000962",369506,"C","G","6492.58","198.0","0.97","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[54,"NC_000962",369506,"C","G","28842.0","914.0","0.97","Nonsyn","ggc","Cgc","3259G>C","Gly1087Arg",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01222","NC_000962",369765,"GCC","GC",{"v":800921,"d":"800,921"},"27.0","1.00","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
["G01491","NC_000962",369765,"GCC","GC","2927.91","94.0","0.98","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
["G01492","NC_000962",369765,"GCC","GC","7924.07","273.0","0.94","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
["G01498","NC_000962",369765,"GCC","GC","3631.2","126.0","0.95","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
[7011,"NC_000962",369765,"GCC","GC","2724.85","93.0","0.94","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
[7739,"NC_000962",369765,"GCC","GC","2775.35","93.0","0.96","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
[58,"NC_000962",369765,"GCC","GC","6145.48","206.0","0.90","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
[64,"NC_000962",369765,"GCC","GC","2977.66","115.0","0.76","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
["MP2","NC_000962",369765,"GCC","GC","7416.87","233.0","0.93","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
["MP1","NC_000962",369765,"GCC","GC","5959.71","184.0","0.94","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
[54,"NC_000962",369765,"GCC","GC","5023.37","233.0","0.71","Deletion","ggc","GC","2998delG","Gly1000fs","yes","fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
["G01222","NC_000962",372149,"G","A","1007.54","33.0","1.00","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
["G01491","NC_000962",372149,"G","A","1703.9","56.0","0.98","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
["G01492","NC_000962",372149,"G","A","4618.64","152.0","0.96","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
["G01498","NC_000962",372149,"G","A","2377.21","83.0","0.98","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
[7011,"NC_000962",372149,"G","A","1063.08","54.0","0.98","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
[7739,"NC_000962",372149,"G","A","1389.41","59.0","1.00","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
[58,"NC_000962",372149,"G","A","18718.0","610.0","0.99","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
[64,"NC_000962",372149,"G","A","10534.5","392.0","0.99","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
["MP2","NC_000962",372149,"G","A","8801.77","269.0","0.99","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
["MP1","NC_000962",372149,"G","A","7480.95","227.0","0.99","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
[54,"NC_000962",372149,"G","A","88492.2","2910.0","0.99","Synon","ctg","Ttg","616C>T","Leu206Leu",null,"fig|83332.12.peg.336","Rv0304c","PPE5","PPE family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","synonymous_variantLOW"]
["G01222","NC_000962",372913,"A","C",{"v":968752,"d":"968,752"},"32.0","1.00","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
["G01491","NC_000962",372913,"A","C","2514.04","79.0","1.00","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
["G01492","NC_000962",372913,"A","C","9063.71","295.0","1.00","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
["G01498","NC_000962",372913,"A","C","2091.3","70.0","0.99","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
[7011,"NC_000962",372913,"A","C","2911.7","94.0","1.00","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
[7739,"NC_000962",372913,"A","C","2593.51","84.0","0.98","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
[58,"NC_000962",372913,"A","C","2143.24","78.0","0.86","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
[64,"NC_000962",372913,"A","C","1409.49","49.0","0.91","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
["MP2","NC_000962",372913,"A","C","6431.12","191.0","1.00","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
["MP1","NC_000962",372913,"A","C","5626.22","167.0","1.00","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
[54,"NC_000962",372913,"A","C","4491.1","158.0","0.91","Synon","ggt","ggG","2799T>G","Gly933Gly",null,"fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","synonymous_variantLOW"]
["G01222","NC_000962",373282,"TAA","TA","775.32","25.0","1.00","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantMODERATE"]
["G01491","NC_000962",373282,"TAA","TA","2625.94","85.0","0.96","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantMODERATE"]
["G01492","NC_000962",373282,"TAA","TA","6041.66","197.0","0.97","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantMODERATE"]
["G01498","NC_000962",373282,"TAA","TA","2458.59","84.0","0.92","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantMODERATE"]
[7011,"NC_000962",373282,"TAA","TA","1030.69","46.0","0.96","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantMODERATE"]
[7739,"NC_000962",373282,"TAA","TA","1530.82","59.0","1.00","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantMODERATE"]
[58,"NC_000962",373282,"TAA","TA","3587.16","119.0","0.92","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantMODERATE"]
[64,"NC_000962",373282,"TAA","TA","1874.5","67.0","0.89","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantHIGH"]
["MP2","NC_000962",373282,"TAA","TA","6519.2","197.0","1.00","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantMODERATE"]
["MP1","NC_000962",373282,"TAA","TA","5615.75","172.0","0.97","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantLOW"]
[54,"NC_000962",373282,"TAA","TA","47750.1","1550.0","0.96","Deletion","tta","TA","2428delT","Leu810fs","yes","fig|83332.12.peg.337","Rv0305c","PPE6","PPE family protein, MPTR subgroup ","PPE family protein ","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","frameshift_variantMODERATE"]
["G01222","NC_000962",376774,"T","C",{"v":964793,"d":"964,793"},"35.0","1.00","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantLOW"]
["G01491","NC_000962",376774,"T","C","5219.23","164.0","1.00","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantMODERATE"]
["G01492","NC_000962",376774,"T","C","12063.1","393.0","0.99","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantLOW"]
["G01498","NC_000962",376774,"T","C","2870.81","96.0","1.00","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantMODERATE"]
[7011,"NC_000962",376774,"T","C","2418.33","91.0","0.98","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantLOW"]
[7739,"NC_000962",376774,"T","C","1860.15","73.0","1.00","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantLOW"]
[58,"NC_000962",376774,"T","C","1917.73","67.0","0.99","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantLOW"]
[64,"NC_000962",376774,"T","C","3742.99","125.0","1.00","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantLOW"]
["MP2","NC_000962",376774,"T","C","7209.89","222.0","1.00","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantLOW"]
["MP1","NC_000962",376774,"T","C","6310.01","192.0","0.99","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantLOW"]
[54,"NC_000962",376774,"T","C","1169.48","47.0","0.92","Synon","gca","gcG","282A>G","Ala94Ala",null,"fig|83332.12.peg.339","Rv0307c",null,"hypothetical protein","Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family","putative membrane-associated phospholipid phosphatase, PAMP2 superfamily","synonymous_variantLOW"]
["G01222","NC_000962",381030,"A","G","1086.97","36.0","1.00","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",381030,"A","G","4235.73","132.0","1.00","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",381030,"A","G","10524.5","334.0","0.99","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",381030,"A","G","2485.86","81.0","1.00","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",381030,"A","G","3355.03","104.0","1.00","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",381030,"A","G","3446.55","110.0","0.99","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",381030,"A","G",{"v":822709,"d":"822,709"},"27.0","1.00","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",381030,"A","G",{"v":761817,"d":"761,817"},"24.0","1.00","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",381030,"A","G","8299.03","241.0","1.00","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",381030,"A","G","7434.32","216.0","1.00","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",381030,"A","G","1408.3","46.0","0.94","Nonsyn","agt","Ggt","475A>G","Ser159Gly",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",382243,"C","T","1096.87","35.0","1.00","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",382243,"C","T","5503.7","176.0","0.99","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",382243,"C","T","11438.2","372.0","0.98","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",382243,"C","T","2149.75","74.0","0.96","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",382243,"C","T","2636.88","83.0","0.99","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",382243,"C","T","2118.74","69.0","1.00","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",382243,"C","T","4899.48","153.0","0.97","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",382243,"C","T","3829.44","121.0","0.97","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",382243,"C","T","6364.06","196.0","0.99","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",382243,"C","T","4679.78","151.0","1.00","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",382243,"C","T","8437.06","259.0","1.00","Nonsyn","ccg","cTg","1688C>T","Pro563Leu",null,"fig|83332.12.peg.345","Rv0312",null,"FIG00821990: molecular chaperone","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",382489,"C","T",{"v":856753,"d":"856,753"},"27.0","1.00",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODERATE"]
["G01491","NC_000962",382489,"C","T","4450.58","141.0","0.99",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODERATE"]
["G01492","NC_000962",382489,"C","T","9693.42","324.0","0.98",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODERATE"]
["G01498","NC_000962",382489,"C","T","1666.33","59.0","0.98",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODERATE"]
[7011,"NC_000962",382489,"C","T","2136.03","69.0","0.99",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODERATE"]
[7739,"NC_000962",382489,"C","T","2283.81","77.0","1.00",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODERATE"]
[58,"NC_000962",382489,"C","T","5848.52","180.0","0.99",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",382489,"C","T","2828.44","89.0","1.00",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",382489,"C","T","7259.04","218.0","1.00",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODERATE"]
["MP1","NC_000962",382489,"C","T","6821.14","207.0","1.00",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODERATE"]
[54,"NC_000962",382489,"C","T","13311.4","418.0","0.99",{"$nulls":10},"FIG00821990: molecular chaperone","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",384138,"C","T",{"v":972695,"d":"972,695"},"39.0","0.93","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantMODIFIER"]
["G01491","NC_000962",384138,"C","T","6334.89","198.0","0.99","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantLOW"]
["G01492","NC_000962",384138,"C","T","14234.9","451.0","0.98","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantMODIFIER"]
["G01498","NC_000962",384138,"C","T","3006.53","113.0","0.86","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantLOW"]
[7011,"NC_000962",384138,"C","T","2774.54","100.0","0.99","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantMODIFIER"]
[7739,"NC_000962",384138,"C","T","3029.07","106.0","0.98","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantMODIFIER"]
[58,"NC_000962",384138,"C","T","1071.43","36.0","1.00","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantMODIFIER"]
[64,"NC_000962",384138,"C","T",{"v":773686,"d":"773,686"},"26.0","0.96","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantMODIFIER"]
["MP2","NC_000962",384138,"C","T","8107.96","235.0","0.99","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantMODIFIER"]
["MP1","NC_000962",384138,"C","T","7609.68","219.0","1.00","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantMODIFIER"]
[54,"NC_000962",384138,"C","T","4315.34","139.0","1.00","Synon","ggc","ggT","507C>T","Gly169Gly",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","synonymous_variantMODIFIER"]
["G01222","NC_000962",384248,"G","C","1107.54","34.0","1.00","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantMODERATE"]
["G01491","NC_000962",384248,"G","C","5440.5","173.0","0.98","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantMODERATE"]
["G01492","NC_000962",384248,"G","C","12981.6","417.0","1.00","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantMODERATE"]
["G01498","NC_000962",384248,"G","C","3355.38","116.0","0.93","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantMODERATE"]
[7011,"NC_000962",384248,"G","C","3459.59","109.0","0.98","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantMODERATE"]
[7739,"NC_000962",384248,"G","C","3894.46","124.0","0.98","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantMODERATE"]
[58,"NC_000962",384248,"G","C","3409.2","106.0","1.00","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantMODERATE"]
[64,"NC_000962",384248,"G","C","3566.68","110.0","0.99","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantLOW"]
["MP2","NC_000962",384248,"G","C","7019.86","209.0","0.99","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantMODERATE"]
["MP1","NC_000962",384248,"G","C","7263.84","213.0","1.00","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantMODERATE"]
[54,"NC_000962",384248,"G","C","4745.15","145.0","0.99","Nonsyn","tgg","tCg","617G>C","TrMP206Ser",null,"fig|83332.12.peg.348","Rv0315",null,"glucan endo-1,3-beta-D-glucosidase","putative membrane protein","Muconolactone isomerase (EC 5.3.3.4)","missense_variantLOW"]
["G01222","NC_000962",386432,"C","G","1418.96","45.0","1.00","Nonsyn","ggg","gCg","650G>C","Gly217Ala",null,"fig|83332.12.peg.352","Rv0318c",null,"Metal transporter, ZIP family","tRNA-Gly-CCC","Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)","missense_variantMODERATE"]
["G01491","NC_000962",386432,"C","G","5098.74","155.0","0.99","Nonsyn","ggg","gCg","650G>C","Gly217Ala",null,"fig|83332.12.peg.352","Rv0318c",null,"Metal transporter, ZIP family","tRNA-Gly-CCC","Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)","missense_variantMODERATE"]
["G01492","NC_000962",386432,"C","G","12085.7","386.0","0.99","Nonsyn","ggg","gCg","650G>C","Gly217Ala",null,"fig|83332.12.peg.352","Rv0318c",null,"Metal transporter, ZIP family","tRNA-Gly-CCC","Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)","missense_variantMODERATE"]
["G01498","NC_000962",386432,"C","G","3218.4","104.0","0.99","Nonsyn","ggg","gCg","650G>C","Gly217Ala",null,"fig|83332.12.peg.352","Rv0318c",null,"Metal transporter, ZIP family","tRNA-Gly-CCC","Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)","missense_variantMODERATE"]
[7011,"NC_000962",386432,"C","G","2846.06","93.0","0.99","Nonsyn","ggg","gCg","650G>C","Gly217Ala",null,"fig|83332.12.peg.352","Rv0318c",null,"Metal transporter, ZIP family","tRNA-Gly-CCC","Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)","missense_variantMODERATE"]
[58,"NC_000962",386432,"C","G","3875.49","126.0","0.99","Nonsyn","ggg","gCg","650G>C","Gly217Ala",null,"fig|83332.12.peg.352","Rv0318c",null,"Metal transporter, ZIP family","tRNA-Gly-CCC","Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)","missense_variantMODERATE"]
[7011,"NC_000962",389162,"C","T","3615.27","117.0","0.99",{"$nulls":10},"Deoxycytidine triphosphate deaminase (EC 3.5.4.30) (dUMP-forming)","UDP-glucose 6-dehydrogenase (EC 1.1.1.22)","intergenic_regionMODIFIER"]
["G01492","NC_000962",390828,"T","C","10319.6","330.0","0.99","Nonsyn","agt","Ggt","379A>G","Ser127Gly",null,"fig|83332.12.peg.357","Rv0323c",null,"Mycothiol conjugate amidase Mca (Mycothiol S-conjugate amidase)","UDP-glucose 6-dehydrogenase (EC 1.1.1.22)","Transcriptional regulator, ArsR family ","missense_variantMODERATE"]
["G01222","NC_000962",391853,"A","G",{"v":468069,"d":"468,069"},"16.0","1.00","Nonsyn","act","Gct","502A>G","Thr168Ala",null,"fig|83332.12.peg.358","Rv0324",null,"Transcriptional regulator, ArsR family ","Mycothiol conjugate amidase Mca (Mycothiol S-conjugate amidase)","Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)","missense_variantMODERATE"]
["MP1","NC_000962",391853,"A","G","7063.62","208.0","1.00","Nonsyn","act","Gct","502A>G","Thr168Ala",null,"fig|83332.12.peg.358","Rv0324",null,"Transcriptional regulator, ArsR family ","Mycothiol conjugate amidase Mca (Mycothiol S-conjugate amidase)","Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)","missense_variantMODERATE"]
[64,"NC_000962",392261,"T","C","1405.5","42.0","1.00","Nonsyn","tag","Cag","196T>C","Ter66Glnext*?",null,"fig|83332.12.peg.359","Rv0325",null,"Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)","Transcriptional regulator, ArsR family ","Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)","stop_lostHIGH"]
[7739,"NC_000962",404326,"T","C","3513.82","108.0","1.00","Nonsyn","agg","Ggg","1516A>G","Arg506Gly",null,"fig|83332.12.peg.372","Rv0338c",null,"Iron-sulphur-binding reductase","Alanine transaminase (EC 2.6.1.2)","Long regulatory protein with LuxR domain","missense_variantMODERATE"]
[58,"NC_000962",404326,"T","C","1863.01","56.0","0.98","Nonsyn","agg","Ggg","1516A>G","Arg506Gly",null,"fig|83332.12.peg.372","Rv0338c",null,"Iron-sulphur-binding reductase","Alanine transaminase (EC 2.6.1.2)","Long regulatory protein with LuxR domain","missense_variantMODERATE"]
[7011,"NC_000962",405788,"C","A","2859.58","88.0","1.00","Synon","gtg","gtT","54G>T","Val18Val",null,"fig|83332.12.peg.372","Rv0338c",null,"Iron-sulphur-binding reductase","Alanine transaminase (EC 2.6.1.2)","Long regulatory protein with LuxR domain","synonymous_variantLOW"]
["G01492","NC_000962",405854,"C","G","10438.9","334.0","0.98",{"$nulls":10},"Iron-sulphur-binding reductase","Long regulatory protein with LuxR domain","intergenic_regionLOW"]
[7011,"NC_000962",411100,"A","G","2734.15","85.0","1.00","Nonsyn","aat","aGt","194A>G","Asn65Ser",null,"fig|83332.12.peg.376","Rv0342","iniA","Isoniazid inductible protein IniA, dynamin-like protein","Isoniazid inductible protein IniB","Isoniazid inductible protein IniC, dynamin-like protein","missense_variantMODERATE"]
[54,"NC_000962",411100,"A","G","17659.1","546.0","0.98","Nonsyn","aat","aGt","194A>G","Asn65Ser",null,"fig|83332.12.peg.376","Rv0342","iniA","Isoniazid inductible protein IniA, dynamin-like protein","Isoniazid inductible protein IniB","Isoniazid inductible protein IniC, dynamin-like protein","missense_variantMODERATE"]
["MP2","NC_000962",412280,"T","G","8199.96","238.0","1.00","Nonsyn","cat","caG","1374T>G","His458Gln",null,"fig|83332.12.peg.376","Rv0342","iniA","Isoniazid inductible protein IniA, dynamin-like protein","Isoniazid inductible protein IniB","Isoniazid inductible protein IniC, dynamin-like protein","missense_variantMODERATE"]
[58,"NC_000962",414486,"C","T","4215.05","132.0","0.99","Synon","gag","gaA","429G>A","Glu143Glu",null,"fig|83332.12.peg.378","Rv0344c","lpqJ","Lipoprotein LpqJ","Isoniazid inductible protein IniC, dynamin-like protein","Molybdenum cofactor cytidylyltransferase (EC 2.7.7.76)","synonymous_variantLOW"]
[7011,"NC_000962",420008,"A","G","3076.11","95.0","1.00","Synon","gca","gcG","174A>G","Ala58Ala",null,"fig|83332.12.peg.386","Rv0350","dnaK","Chaperone protein DnaK","hypothetical protein","Heat shock protein GrpE","synonymous_variantLOW"]
[7739,"NC_000962",420008,"A","G","3473.25","106.0","1.00","Synon","gca","gcG","174A>G","Ala58Ala",null,"fig|83332.12.peg.386","Rv0350","dnaK","Chaperone protein DnaK","hypothetical protein","Heat shock protein GrpE","synonymous_variantLOW"]
["G01498","NC_000962",420100,"C","T","1713.34","62.0","0.91","Nonsyn","ccg","cTg","266C>T","Pro89Leu",null,"fig|83332.12.peg.386","Rv0350","dnaK","Chaperone protein DnaK","hypothetical protein","Heat shock protein GrpE","missense_variantMODERATE"]
["G01491","NC_000962",422745,"T","C","3147.03","101.0","1.00","Synon","ggt","ggC","198T>C","Gly66Gly",null,"fig|83332.12.peg.388","Rv0352","dnaJ1","Chaperone protein DnaJ","Heat shock protein GrpE","HspR, transcriptional repressor of DnaK operon","synonymous_variantLOW"]
[54,"NC_000962",422745,"T","C","2462.88","95.0","0.90","Synon","ggt","ggC","198T>C","Gly66Gly",null,"fig|83332.12.peg.388","Rv0352","dnaJ1","Chaperone protein DnaJ","Heat shock protein GrpE","HspR, transcriptional repressor of DnaK operon","synonymous_variantLOW"]
["MP2","NC_000962",424320,"TCC","TCCC","6589.57","203.0","0.96","Insertion","ggaatt","GGGAatt","360_361insG","Val120_Gly121fs","yes","fig|83332.12.peg.390","Rv0354c","PPE7","PPE family protein ","HspR, transcriptional repressor of DnaK operon","PPE family protein, MPTR subgroup ","frameshift_variantHIGH"]
[58,"NC_000962",424790,"CT","CTAT","5375.99","184.0","0.88","Insertion","aggttc","ATAGgttc","9888_9889insAT","Asp3296_Arg3297fs","yes","fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","frameshift_variantHIGH"]
[7011,"NC_000962",424932,"T","A","2154.01","71.0","1.00","Nonsyn","atc","Ttc","9748A>T","Ile3250Phe",null,"fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","missense_variantLOW"]
["G01498","NC_000962",426909,"A","C","2414.07","77.0","1.00","Nonsyn","tgg","Ggg","7771T>G","TrMP2591Gly",null,"fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",426909,"A","C","2574.72","80.0","1.00","Nonsyn","tgg","Ggg","7771T>G","TrMP2591Gly",null,"fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",427390,"G","A","7598.79","256.0","0.98","Synon","ctc","ctT","7290C>T","Leu2430Leu",null,"fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",427919,"T","A",{"v":951032,"d":"951,032"},"30.0","1.00","Nonsyn","cag","cTg","6761A>T","Gln2254Leu",null,"fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","missense_variantHIGH"]
["MP1","NC_000962",427919,"T","A","5415.13","161.0","1.00","Nonsyn","cag","cTg","6761A>T","Gln2254Leu",null,"fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","missense_variantHIGH"]
[64,"NC_000962",428698,"C","T","1999.42","83.0","0.81","Synon","gcg","gcA","5982G>A","Ala1994Ala",null,"fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","synonymous_variantMODERATE"]
[7739,"NC_000962",432032,"G","A","2831.54","90.0","0.98","Nonsyn","acg","aTg","2648C>T","Thr883Met",null,"fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",432762,"CTT","CT","2597.74","100.0","0.94","Deletion","caaggc","cAGgc","1916delA","Gln639fs","yes","fig|83332.12.peg.391","Rv0355c","PPE8","PPE family protein, MPTR subgroup ","PPE family protein ","hypothetical protein","frameshift_variantHIGH"]
["G01491","NC_000962",438271,"G","A","4405.08","143.0","1.00","Nonsyn","gcc","Acc","754G>A","Ala252Thr",null,"fig|83332.12.peg.396","Rv0359",null,"Zinc metalloprotease","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",438271,"G","A","9878.03","333.0","1.00","Nonsyn","gcc","Acc","754G>A","Ala252Thr",null,"fig|83332.12.peg.396","Rv0359",null,"Zinc metalloprotease","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",440679,"G","A",{"v":531834,"d":"531,834"},"17.0","1.00","Nonsyn","ggt","gAt","809G>A","Gly270Asp",null,"fig|83332.12.peg.399","Rv0362","mgtE","Mg/Co/Ni transporter MgtE, CBS domain-containing","Uncharacterized membrane protein Rv0361","Fructose-bisphosphate aldolase class II (EC 4.1.2.13)","missense_variantMODERATE"]
[54,"NC_000962",440679,"G","A","3327.59","124.0","0.98","Nonsyn","ggt","gAt","809G>A","Gly270Asp",null,"fig|83332.12.peg.399","Rv0362","mgtE","Mg/Co/Ni transporter MgtE, CBS domain-containing","Uncharacterized membrane protein Rv0361","Fructose-bisphosphate aldolase class II (EC 4.1.2.13)","missense_variantMODERATE"]
["MP2","NC_000962",443618,"A","T","7262.29","212.0","1.00","Nonsyn","ttc","Atc","580T>A","Phe194Ile",null,"fig|83332.12.peg.402","Rv0365c",null,"fructose-bisphosphate aldolase family protein","DedA protein","Predicted kinase","missense_variantMODERATE"]
[58,"NC_000962",445780,"C","T","1805.4","60.0","0.98","Nonsyn","cgt","cAt","746G>A","Arg249His",null,"fig|83332.12.peg.405","Rv0368c",null,"Carbon monoxide oxidation accessory protein CoxE","hypothetical protein","Carbon monoxide oxidation accessory protein CoxG","missense_variantMODERATE"]
[7011,"NC_000962",447042,"G","A","3984.78","119.0","0.98","Nonsyn","cct","cTt","92C>T","Pro31Leu",null,"fig|83332.12.peg.406","Rv0369c",null,"Carbon monoxide oxidation accessory protein CoxG","Carbon monoxide oxidation accessory protein CoxE","Carbon monoxide oxidation accessory protein CoxD","missense_variantMODERATE"]
["G01492","NC_000962",447442,"C","T","10208.0","344.0","0.98","Nonsyn","ggg","gAg","602G>A","Gly201Glu",null,"fig|83332.12.peg.407","Rv0370c",null,"Carbon monoxide oxidation accessory protein CoxD","Carbon monoxide oxidation accessory protein CoxG","Molybdenum cofactor cytidylyltransferase (EC 2.7.7.76)","missense_variantMODERATE"]
["G01222","NC_000962",450390,"ATG","AG","718.76","23.0","1.00","Deletion","tcattt","tCTtt","1413delA","Ser471fs","yes","fig|83332.12.peg.410","Rv0373c",null,"Aerobic carbon monoxide dehydrogenase (quinone), large chain (EC 1.2.5.3)","Aerobic carbon monoxide dehydrogenase molybdenum cofactor insertion protein CoxF","Aerobic carbon monoxide dehydrogenase (quinone), small chain (EC 1.2.5.3)","frameshift_variantLOW"]
["G01491","NC_000962",450390,"ATG","AG","4908.33","152.0","0.96","Deletion","tcattt","tCTtt","1413delA","Ser471fs","yes","fig|83332.12.peg.410","Rv0373c",null,"Aerobic carbon monoxide dehydrogenase (quinone), large chain (EC 1.2.5.3)","Aerobic carbon monoxide dehydrogenase molybdenum cofactor insertion protein CoxF","Aerobic carbon monoxide dehydrogenase (quinone), small chain (EC 1.2.5.3)","frameshift_variantLOW"]
[54,"NC_000962",450390,"ATG","AG",{"v":749809,"d":"749,809"},"29.0","0.78","Deletion","tcattt","tCTtt","1413delA","Ser471fs","yes","fig|83332.12.peg.410","Rv0373c",null,"Aerobic carbon monoxide dehydrogenase (quinone), large chain (EC 1.2.5.3)","Aerobic carbon monoxide dehydrogenase molybdenum cofactor insertion protein CoxF","Aerobic carbon monoxide dehydrogenase (quinone), small chain (EC 1.2.5.3)","frameshift_variantLOW"]
["MP2","NC_000962",455325,"CGGGT","GGGGC","6665.63","179.0","0.99","Nonsyn","ccgggt","cGGGGC","905CGGGT>GGGGC","ProGly302ArgGly",null,"fig|83332.12.peg.414","Rv0377",null,"Transcription regulator in CO-DH cluster","Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",457452,"T","G",{"v":252212,"d":"252,212"},"9.0","1.00","Synon","aca","acC","372A>C","Thr124Thr",null,"fig|83332.12.peg.418","Rv0381c",null,"hypothetical protein Rv0381c","SpoU rRNA methylase family protein","Orotate phosphoribosyltransferase (EC 2.4.2.10)","synonymous_variantLOW"]
[7739,"NC_000962",458282,"A","G","3077.24","100.0","1.00","Synon","tat","taC","99T>C","Tyr33Tyr",null,"fig|83332.12.peg.419","Rv0382c","pyrE","Orotate phosphoribosyltransferase (EC 2.4.2.10)","hypothetical protein Rv0381c","putative membrane protein","synonymous_variantLOW"]
["G01498","NC_000962",459399,"A","C","3359.85","108.0","0.97",{"$nulls":10},"putative membrane protein","Chaperone protein ClpB (ATP-dependent unfoldase)","intergenic_regionHIGH"]
["G01491","NC_000962",467585,"G","C","7309.39","226.0","1.00","Nonsyn","cac","caG","417C>G","His139Gln",null,"fig|83332.12.peg.426","Rv0388c","PPE9","PPE family protein, SVP subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",467585,"G","C","2022.84","66.0","0.99","Nonsyn","cac","caG","417C>G","His139Gln",null,"fig|83332.12.peg.426","Rv0388c","PPE9","PPE family protein, SVP subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",467590,"T","C","1093.71","37.0","1.00","Nonsyn","acg","Gcg","412A>G","Thr138Ala",null,"fig|83332.12.peg.426","Rv0388c","PPE9","PPE family protein, SVP subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",467590,"T","C","3327.48","97.0","1.00","Nonsyn","acg","Gcg","412A>G","Thr138Ala",null,"fig|83332.12.peg.426","Rv0388c","PPE9","PPE family protein, SVP subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",467621,"T","G","2347.46","77.0","0.93","Synon","gga","ggC","381A>C","Gly127Gly",null,"fig|83332.12.peg.426","Rv0388c","PPE9","PPE family protein, SVP subgroup ","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",467638,"G","T","2170.78","68.0","1.00","Nonsyn","cag","Aag","364C>A","Gln122Lys",null,"fig|83332.12.peg.426","Rv0388c","PPE9","PPE family protein, SVP subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",468357,"A","G","5462.62","174.0","0.98","Nonsyn","ttc","tCc","8T>C","Phe3Ser",null,"fig|83332.12.peg.427",null,null,"hypothetical protein","PPE family protein, SVP subgroup ","Formate-dependent phosphoribosylglycinamide formyltransferase","missense_variantMODERATE"]
["G01491","NC_000962",475178,"T","C","4461.39","141.0","1.00","Nonsyn","gtc","gCc","230T>C","Val77Ala",null,"fig|83332.12.peg.435","Rv0395",null,"hypothetical protein","putative membrane protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",475178,"T","C","5128.87","172.0","0.94","Nonsyn","gtc","gCc","230T>C","Val77Ala",null,"fig|83332.12.peg.435","Rv0395",null,"hypothetical protein","putative membrane protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",475866,"C","G","2845.23","89.0","0.99","Synon","acc","acG","51C>G","Thr17Thr",null,"fig|83332.12.peg.437","Rv0397",null,"13E12 repeat family protein, HNH endonuclease domain","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",475866,"C","G",{"v":639384,"d":"639,384"},"24.0","1.00","Synon","acc","acG","51C>G","Thr17Thr",null,"fig|83332.12.peg.437","Rv0397",null,"13E12 repeat family protein, HNH endonuclease domain","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",482237,"A","G","9430.06","273.0","1.00","Nonsyn","ttg","tCg","995T>C","Leu332Ser",null,"fig|83332.12.peg.443","Rv0402c","mmpL1","Transmembrane transport protein MmpL1","putative membrane protein","Membrane protein MmpS1","missense_variantMODERATE"]
[58,"NC_000962",483935,"T","G","3047.88","100.0","0.98","Synon","agg","Cgg","43A>C","Arg15Arg",null,"fig|83332.12.peg.445",null,null,"hypothetical protein","Membrane protein MmpS1","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD30","synonymous_variantLOW"]
[7011,"NC_000962",488673,"C","T","2718.39","94.0","1.00","Synon","gac","gaT","2943C>T","Asp981Asp",null,"fig|83332.12.peg.447","Rv0405","pks6","Modular polyketide synthase","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD30","MBL-fold metallo-hydrolase superfamily","synonymous_variantLOW"]
["G01492","NC_000962",489000,"C","T","5530.09","184.0","0.97","Synon","acc","acT","3270C>T","Thr1090Thr",null,"fig|83332.12.peg.447","Rv0405","pks6","Modular polyketide synthase","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD30","MBL-fold metallo-hydrolase superfamily","synonymous_variantLOW"]
["G01222","NC_000962",489935,"G","C","1126.78","35.0","1.00","Nonsyn","cgg","cCg","4205G>C","Arg1402Pro",null,"fig|83332.12.peg.447","Rv0405","pks6","Modular polyketide synthase","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD30","Glucose-6-phosphate dehydrogenase (coenzyme F420) (EC 1.1.98.2)","missense_variantMODERATE"]
["MP1","NC_000962",489935,"G","C","6458.95","189.0","1.00","Nonsyn","cgg","cCg","4205G>C","Arg1402Pro",null,"fig|83332.12.peg.447","Rv0405","pks6","Modular polyketide synthase","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD30","Glucose-6-phosphate dehydrogenase (coenzyme F420) (EC 1.1.98.2)","missense_variantMODERATE"]
[64,"NC_000962",490385,"G","A","1814.87","58.0","0.98","Synon","tgc","tgT","321C>T","Cys107Cys",null,"fig|83332.12.peg.448","Rv0406c",null,"MBL-fold metallo-hydrolase superfamily","Modular polyketide synthase","Glucose-6-phosphate dehydrogenase (coenzyme F420) (EC 1.1.98.2)","synonymous_variantLOW"]
["MP2","NC_000962",490385,"G","A","8275.36","244.0","1.00","Synon","tgc","tgT","321C>T","Cys107Cys",null,"fig|83332.12.peg.448","Rv0406c",null,"MBL-fold metallo-hydrolase superfamily","Modular polyketide synthase","Glucose-6-phosphate dehydrogenase (coenzyme F420) (EC 1.1.98.2)","synonymous_variantLOW"]
[58,"NC_000962",491742,"T","C","4270.79","132.0","0.99","Synon","ttt","ttC","960T>C","Phe320Phe",null,"fig|83332.12.peg.449","Rv0407","fgd1","Glucose-6-phosphate dehydrogenase (coenzyme F420) (EC 1.1.98.2)","MBL-fold metallo-hydrolase superfamily","BioD-like N-terminal domain / Phosphate acetyltransferase (EC 2.3.1.8)","synonymous_variantLOW"]
[58,"NC_000962",492150,"G","C","1012.63","31.0","1.00","Nonsyn","ggc","gCc","290G>C","Gly97Ala",null,"fig|83332.12.peg.450","Rv0408","pta","BioD-like N-terminal domain / Phosphate acetyltransferase (EC 2.3.1.8)","Glucose-6-phosphate dehydrogenase (coenzyme F420) (EC 1.1.98.2)","Acetate kinase (EC 2.7.2.1)","missense_variantMODERATE"]
["G01498","NC_000962",494685,"A","C","1561.75","54.0","0.96","Synon","agg","Cgg","835A>C","Arg279Arg",null,"fig|83332.12.peg.451","Rv0409","ackA","Acetate kinase (EC 2.7.2.1)","BioD-like N-terminal domain / Phosphate acetyltransferase (EC 2.3.1.8)","Serine/threonine protein kinase","synonymous_variantLOW"]
["G01491","NC_000962",498531,"A","G","6669.24","207.0","1.00","Synon","gct","gcC","1089T>C","Ala363Ala",null,"fig|83332.12.peg.454","Rv0412c",null,"FIG01121868: Possible membrane protein","Glutamine ABC transporter, substrate-binding protein GlnH","Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase)","synonymous_variantLOW"]
[54,"NC_000962",498531,"A","G","3471.74","114.0","0.99","Synon","gct","gcC","1089T>C","Ala363Ala",null,"fig|83332.12.peg.454","Rv0412c",null,"FIG01121868: Possible membrane protein","Glutamine ABC transporter, substrate-binding protein GlnH","Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase)","synonymous_variantLOW"]
["MP2","NC_000962",498557,"C","A","6545.08","193.0","0.99","Nonsyn","gac","Tac","1063G>T","Asp355Tyr",null,"fig|83332.12.peg.454","Rv0412c",null,"FIG01121868: Possible membrane protein","Glutamine ABC transporter, substrate-binding protein GlnH","Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase)","missense_variantMODERATE"]
[58,"NC_000962",502589,"C","G",{"v":166749,"d":"166,749"},"7.0","1.00","Nonsyn","tcc","tGc","224C>G","Ser75Cys",null,"fig|83332.12.peg.459","Rv0417","thiG","Thiazole synthase (EC 2.8.1.10)","Sulfur carrier protein ThiS","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",502589,"C","G",{"v":343772,"d":"343,772"},"12.0","1.00","Nonsyn","tcc","tGc","224C>G","Ser75Cys",null,"fig|83332.12.peg.459","Rv0417","thiG","Thiazole synthase (EC 2.8.1.10)","Sulfur carrier protein ThiS","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",503354,"G","C","2800.13","86.0","1.00",{"$nulls":10},"hypothetical protein","Uncharacterized lipoprotein aminopeptidase LpqL","intergenic_regionMODIFIER"]
["G01498","NC_000962",505974,"G","A",{"v":825182,"d":"825,182"},"30.0","0.91","Nonsyn","gcg","Acg","835G>A","Ala279Thr",null,"fig|83332.12.peg.462","Rv0419","lpqM","Lipoprotein peptidase LpqM","Uncharacterized lipoprotein aminopeptidase LpqL","putative membrane protein","missense_variantLOW"]
["G01491","NC_000962",510766,"C","A","4276.09","133.0","0.99","Nonsyn","agg","aTg","4556G>T","Arg1519Met",null,"fig|83332.12.peg.468","Rv0425c","ctpH","Metal cation transporting P-type ATPase CtpH","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
[54,"NC_000962",510766,"C","A","58836.6","1781.0","0.98","Nonsyn","agg","aTg","4556G>T","Arg1519Met",null,"fig|83332.12.peg.468","Rv0425c","ctpH","Metal cation transporting P-type ATPase CtpH","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
[58,"NC_000962",511518,"T","G","2235.36","71.0","1.00","Synon","ata","atC","3804A>C","Ile1268Ile",null,"fig|83332.12.peg.468","Rv0425c","ctpH","Metal cation transporting P-type ATPase CtpH","hypothetical protein","putative membrane protein","synonymous_variantLOW"]
[64,"NC_000962",513257,"T","C","1972.12","65.0","0.97","Nonsyn","atg","Gtg","2065A>G","Met689Val",null,"fig|83332.12.peg.468","Rv0425c","ctpH","Metal cation transporting P-type ATPase CtpH","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
[7739,"NC_000962",514657,"T","G","2084.82","74.0","0.97","Nonsyn","gag","gCg","665A>C","Glu222Ala",null,"fig|83332.12.peg.468","Rv0425c","ctpH","Metal cation transporting P-type ATPase CtpH","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
[58,"NC_000962",514657,"T","G",{"v":183905,"d":"183,905"},"6.0","0.86","Nonsyn","gag","gCg","665A>C","Glu222Ala",null,"fig|83332.12.peg.468","Rv0425c","ctpH","Metal cation transporting P-type ATPase CtpH","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
[7011,"NC_000962",517358,"T","C","3079.28","97.0","0.99","Nonsyn","gac","gGc","383A>G","AsMP128Gly",null,"fig|83332.12.peg.471","Rv0428c",null,"Histone acetyltransferase HPA2 and related acetyltransferases","Exodeoxyribonuclease III (EC 3.1.11.2)","Peptide deformylase (EC 3.5.1.88)","missense_variantMODERATE"]
["G01492","NC_000962",517411,"A","G","12906.3","408.0","0.99","Synon","cgt","cgC","330T>C","Arg110Arg",null,"fig|83332.12.peg.471","Rv0428c",null,"Histone acetyltransferase HPA2 and related acetyltransferases","Exodeoxyribonuclease III (EC 3.1.11.2)","Peptide deformylase (EC 3.5.1.88)","synonymous_variantLOW"]
["G01222","NC_000962",519185,"T","G",{"v":720529,"d":"720,529"},"23.0","1.00","Nonsyn","gtc","gGc","101T>G","Val34Gly",null,"fig|83332.12.peg.474","Rv0431",null,"Tuberculin related peptide","FIG00822394: hypothetical protein","Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)","missense_variantMODERATE"]
["MP1","NC_000962",519185,"T","G","7388.0","215.0","1.00","Nonsyn","gtc","gGc","101T>G","Val34Gly",null,"fig|83332.12.peg.474","Rv0431",null,"Tuberculin related peptide","FIG00822394: hypothetical protein","Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)","missense_variantMODERATE"]
[64,"NC_000962",519331,"A","G","1258.99","44.0","0.98","Nonsyn","aca","Gca","247A>G","Thr83Ala",null,"fig|83332.12.peg.474","Rv0431",null,"Tuberculin related peptide","FIG00822394: hypothetical protein","Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)","missense_variantMODERATE"]
[7739,"NC_000962",519666,"C","T","3354.32","106.0","0.99","Synon","ctg","Ttg","67C>T","Leu23Leu",null,"fig|83332.12.peg.475","Rv0432","sodC","Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)","Tuberculin related peptide","Carboxylate-amine ligase","synonymous_variantMODERATE"]
["G01498","NC_000962",524891,"C","A","3622.84","118.0","1.00","Nonsyn","ggc","gTc","500G>T","Gly167Val",null,"fig|83332.12.peg.480","Rv0436c","pssA","CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)","Cell division-associated, ATP-dependent zinc metalloprotease FtsH","Phosphatidylserine decarboxylase (EC 4.1.1.65)","missense_variantMODERATE"]
["G01222","NC_000962",527316,"C","G","1061.49","34.0","1.00","Nonsyn","atg","atC","45G>C","Met15Ile",null,"fig|83332.12.peg.482","Rv0438c","moeA2","Molybdopterin molybdenumtransferase (EC 2.10.1.1)","Phosphatidylserine decarboxylase (EC 4.1.1.65)","probable oxidoreductase/Short-chain dehydrogenase","missense_variantMODERATE"]
["G01498","NC_000962",527316,"C","G","3375.74","110.0","0.98","Nonsyn","atg","atC","45G>C","Met15Ile",null,"fig|83332.12.peg.482","Rv0438c","moeA2","Molybdopterin molybdenumtransferase (EC 2.10.1.1)","Phosphatidylserine decarboxylase (EC 4.1.1.65)","probable oxidoreductase/Short-chain dehydrogenase","missense_variantMODERATE"]
["G01491","NC_000962",528354,"C","A","4437.46","138.0","1.00",{"$nulls":10},"probable oxidoreductase/Short-chain dehydrogenase","Heat shock protein 60 kDa family chaperone GroEL","intergenic_regionLOW"]
[54,"NC_000962",528354,"C","A","5736.38","175.0","1.00",{"$nulls":10},"probable oxidoreductase/Short-chain dehydrogenase","Heat shock protein 60 kDa family chaperone GroEL","intergenic_regionLOW"]
["MP2","NC_000962",532097,"T","C","5952.53","174.0","1.00","Nonsyn","aaa","Gaa","118A>G","Lys40Glu",null,"fig|83332.12.peg.486","Rv0442c","PPE10","PPE family protein, MPTR subgroup ","hypothetical protein","Uncharacterized protein Rv0443","missense_variantMODIFIER"]
[58,"NC_000962",539799,"G","A","9064.77","284.0","1.00","Nonsyn","cac","Tac","1693C>T","His565Tyr",null,"fig|83332.12.peg.494","Rv0450c","mmpL4","Transmembrane transport protein MmpL4","Amine oxidase, flavin-containing","Membrane protein MmpS4","missense_variantMODERATE"]
[7011,"NC_000962",541201,"A","G","3315.82","102.0","1.00","Synon","ctt","ctC","291T>C","Leu97Leu",null,"fig|83332.12.peg.494","Rv0450c","mmpL4","Transmembrane transport protein MmpL4","Amine oxidase, flavin-containing","Membrane protein MmpS4","synonymous_variantLOW"]
["G01492","NC_000962",544165,"C","T","8752.1","300.0","0.96","Nonsyn","ccc","cTc","971C>T","Pro324Leu",null,"fig|83332.12.peg.498","Rv0453","PPE11","PPE family protein, PPW subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",544165,"C","T","2108.64","79.0","0.95","Nonsyn","ccc","cTc","971C>T","Pro324Leu",null,"fig|83332.12.peg.498","Rv0453","PPE11","PPE family protein, PPW subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",546357,"A","G","4585.29","147.0","1.00","Synon","act","acC","447T>C","Thr149Thr",null,"fig|83332.12.peg.502","Rv0456c","echA2","Enoyl-CoA hydratase (EC 4.2.1.17)","putative membrane protein","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",546357,"A","G","2211.82","71.0","0.96","Synon","act","acC","447T>C","Thr149Thr",null,"fig|83332.12.peg.502","Rv0456c","echA2","Enoyl-CoA hydratase (EC 4.2.1.17)","putative membrane protein","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",548870,"G","A","1255.28","40.0","1.00","Synon","aac","aaT","738C>T","Asn246Asn",null,"fig|83332.12.peg.505","Rv0457c",null,"Prolyl endopeptidase (EC 3.4.21.26)","Programmed cell death toxin MazF","Aldehyde dehydrogenase (EC 1.2.1.3)","synonymous_variantLOW"]
[64,"NC_000962",551525,"A","C","1270.69","39.0","1.00","Synon","aga","Cga","310A>C","Arg104Arg",null,"fig|83332.12.peg.507","Rv0459",null,"FIG00821442: hypothetical protein","Aldehyde dehydrogenase (EC 1.2.1.3)","putative membrane protein","synonymous_variantLOW"]
[7739,"NC_000962",552085,"A","G","3698.61","116.0","1.00","Synon","caa","caG","105A>G","Gln35Gln",null,"fig|83332.12.peg.509","Rv0461",null,"putative membrane protein","putative membrane protein","Dihydrolipoamide dehydrogenase (EC 1.8.1.4)","synonymous_variantMODERATE"]
["G01498","NC_000962",555740,"CAC","CC","1124.47","49.0","0.88","Deletion","gtg","GG","566delT","Val189fs","yes","fig|83332.12.peg.513","Rv0465c",null,"Transcriptional regulator, Xre family","hypothetical protein","Acyl-ACP thioesterase","frameshift_variantHIGH"]
["G01491","NC_000962",555991,"A","G","4821.88","149.0","0.99","Nonsyn","tgc","Cgc","316T>C","Cys106Arg",null,"fig|83332.12.peg.513","Rv0465c",null,"Transcriptional regulator, Xre family","hypothetical protein","Acyl-ACP thioesterase","missense_variantMODERATE"]
["G01492","NC_000962",555991,"A","G","10495.0","344.0","0.96","Nonsyn","tgc","Cgc","316T>C","Cys106Arg",null,"fig|83332.12.peg.513","Rv0465c",null,"Transcriptional regulator, Xre family","hypothetical protein","Acyl-ACP thioesterase","missense_variantMODERATE"]
["G01222","NC_000962",556201,"T","C","784.04","25.0","1.00","Nonsyn","aac","Gac","106A>G","Asn36Asp",null,"fig|83332.12.peg.513","Rv0465c",null,"Transcriptional regulator, Xre family","hypothetical protein","Acyl-ACP thioesterase","missense_variantMODIFIER"]
["MP1","NC_000962",556201,"T","C","9068.71","261.0","1.00","Nonsyn","aac","Gac","106A>G","Asn36Asp",null,"fig|83332.12.peg.513","Rv0465c",null,"Transcriptional regulator, Xre family","hypothetical protein","Acyl-ACP thioesterase","missense_variantMODIFIER"]
[64,"NC_000962",559437,"G","C",{"v":483787,"d":"483,787"},"17.0","1.00","Nonsyn","cag","caC","543G>C","Gln181His",null,"fig|83332.12.peg.516","Rv0468","fadB2","3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)","Isocitrate lyase (EC 4.1.3.1) @ Methylisocitrate lyase (EC 4.1.3.30)","Possible mycolic acid synthesis protein UmaA1","missense_variantMODERATE"]
[7739,"NC_000962",560857,"C","G","3323.68","107.0","1.00","Synon","ctg","ctC","849G>C","Leu283Leu",null,"fig|83332.12.peg.518","Rv0470c","pcaA","Cyclopropane-fatty-acyl-phospholipid synthase PcaA (EC 2.1.1.79)","Possible mycolic acid synthesis protein UmaA1","hypothetical protein","synonymous_variantMODERATE"]
["G01498","NC_000962",563577,"A","G","1960.27","67.0","1.00","Nonsyn","aaa","aGa","32A>G","Lys11Arg",null,"fig|83332.12.peg.522","Rv0473",null,"putative membrane protein","Transcriptional regulator Rv0472c, AcrR family","Transcriptional regulator, Xre family","missense_variantMODERATE"]
["G01491","NC_000962",565404,"G","T","3351.69","106.0","0.98","Synon","cgg","cgT","384G>T","Arg128Arg",null,"fig|83332.12.peg.523","Rv0474",null,"Transcriptional regulator, Xre family","putative membrane protein","Iron-regulated heparin binding hemagglutinin HbhA (Adhesin)","synonymous_variantLOW"]
["G01222","NC_000962",565655,"A","G",{"v":997463,"d":"997,463"},"33.0","1.00",{"$nulls":10},"Transcriptional regulator, Xre family","Iron-regulated heparin binding hemagglutinin HbhA (Adhesin)","intergenic_regionMODERATE"]
["G01491","NC_000962",565655,"A","G","3849.46","119.0","1.00",{"$nulls":10},"Transcriptional regulator, Xre family","Iron-regulated heparin binding hemagglutinin HbhA (Adhesin)","intergenic_regionMODERATE"]
[54,"NC_000962",565655,"A","G","5119.49","162.0","0.99",{"$nulls":10},"Transcriptional regulator, Xre family","Iron-regulated heparin binding hemagglutinin HbhA (Adhesin)","intergenic_regionMODERATE"]
["MP2","NC_000962",573262,"A","G","7007.56","208.0","1.00","Synon","ggt","ggC","540T>C","Gly180Gly",null,"fig|83332.12.peg.534","Rv0484c",null,"YdfG-like protein","L,D-transpeptidase ","Transcriptional regulator","synonymous_variantLOW"]
[58,"NC_000962",584171,"T","C","974.06","31.0","1.00","Nonsyn","agt","Ggt","481A>G","Ser161Gly",null,"fig|83332.12.peg.546","Rv0493c",null,"hypothetical protein","hypothetical protein","Transcriptional regulator, GntR family","missense_variantMODERATE"]
[7011,"NC_000962",584511,"G","T","2439.63","77.0","1.00","Synon","acc","acA","141C>A","Thr47Thr",null,"fig|83332.12.peg.546","Rv0493c",null,"hypothetical protein","hypothetical protein","Transcriptional regulator, GntR family","synonymous_variantMODERATE"]
["G01492","NC_000962",590436,"T","C","10168.2","328.0","1.00","Synon","gct","gcC","354T>C","Ala118Ala",null,"fig|83332.12.peg.553","Rv0500","proC","Pyrroline-5-carboxylate reductase (EC 1.5.1.2)","TesB-like acyl-CoA thioesterase 3","Excisionase-like protein SCO3328","synonymous_variantLOW"]
["G01222","NC_000962",590763,"G","C",{"v":720584,"d":"720,584"},"23.0","1.00","Nonsyn","gag","gaC","681G>C","Glu227Asp",null,"fig|83332.12.peg.553","Rv0500","proC","Pyrroline-5-carboxylate reductase (EC 1.5.1.2)","TesB-like acyl-CoA thioesterase 3","Excisionase-like protein SCO3328","missense_variantMODERATE"]
["MP1","NC_000962",590763,"G","C","6374.63","189.0","0.99","Nonsyn","gag","gaC","681G>C","Glu227Asp",null,"fig|83332.12.peg.553","Rv0500","proC","Pyrroline-5-carboxylate reductase (EC 1.5.1.2)","TesB-like acyl-CoA thioesterase 3","Excisionase-like protein SCO3328","missense_variantMODERATE"]
[54,"NC_000962",590763,"G","C","29481.7","867.0","0.99","Nonsyn","gag","gaC","681G>C","Glu227Asp",null,"fig|83332.12.peg.553","Rv0500","proC","Pyrroline-5-carboxylate reductase (EC 1.5.1.2)","TesB-like acyl-CoA thioesterase 3","Excisionase-like protein SCO3328","missense_variantMODERATE"]
["MP2","NC_000962",592400,"G","A","8181.89","246.0","0.99","Synon","aag","aaA","747G>A","Lys249Lys",null,"fig|83332.12.peg.556","Rv0501","galE2","UDP-glucose 4-epimerase (EC 5.1.3.2)","hypothetical protein","Phospholipid/glycerol acyltransferase","synonymous_variantLOW"]
[64,"NC_000962",593045,"C","T",{"v":914916,"d":"914,916"},"32.0","0.97","Synon","gtc","gtT","255C>T","Val85Val",null,"fig|83332.12.peg.557","Rv0502",null,"Phospholipid/glycerol acyltransferase","UDP-glucose 4-epimerase (EC 5.1.3.2)","Cyclopropane-fatty-acyl-phospholipid synthase 2, CmaA2 (EC 2.1.1.79)","synonymous_variantMODERATE"]
[7739,"NC_000962",597816,"A","G","2784.9","86.0","1.00","Synon","gca","gcG","618A>G","Ala206Ala",null,"fig|83332.12.peg.563","Rv0507","mmpL2","Transmembrane transport protein MmpL2","Membrane protein MmpS2","Glutaredoxin-like domain-containing protein PA3033","synonymous_variantLOW"]
["G01498","NC_000962",598475,"G","A","2473.44","79.0","0.98","Nonsyn","cgc","cAc","1277G>A","Arg426His",null,"fig|83332.12.peg.563","Rv0507","mmpL2","Transmembrane transport protein MmpL2","Membrane protein MmpS2","Glutaredoxin-like domain-containing protein PA3033","missense_variantMODERATE"]
["G01491","NC_000962",598723,"G","T","3419.95","109.0","0.98","Nonsyn","gat","Tat","1525G>T","Asp509Tyr",null,"fig|83332.12.peg.563","Rv0507","mmpL2","Transmembrane transport protein MmpL2","Membrane protein MmpS2","Glutaredoxin-like domain-containing protein PA3033","missense_variantMODERATE"]
[54,"NC_000962",598723,"G","T","30026.6","907.0","1.00","Nonsyn","gat","Tat","1525G>T","Asp509Tyr",null,"fig|83332.12.peg.563","Rv0507","mmpL2","Transmembrane transport protein MmpL2","Membrane protein MmpS2","Glutaredoxin-like domain-containing protein PA3033","missense_variantMODERATE"]
["MP2","NC_000962",599363,"C","G","6736.65","195.0","1.00","Nonsyn","tct","tGt","2165C>G","Ser722Cys",null,"fig|83332.12.peg.563","Rv0507","mmpL2","Transmembrane transport protein MmpL2","Membrane protein MmpS2","Glutaredoxin-like domain-containing protein PA3033","missense_variantMODERATE"]
["MP1","NC_000962",599363,"C","G","7291.34","212.0","1.00","Nonsyn","tct","tGt","2165C>G","Ser722Cys",null,"fig|83332.12.peg.563","Rv0507","mmpL2","Transmembrane transport protein MmpL2","Membrane protein MmpS2","Glutaredoxin-like domain-containing protein PA3033","missense_variantMODERATE"]
[64,"NC_000962",599868,"A","G","6127.58","191.0","0.98","Synon","cga","cgG","2670A>G","Arg890Arg",null,"fig|83332.12.peg.563","Rv0507","mmpL2","Transmembrane transport protein MmpL2","Membrane protein MmpS2","Glutaredoxin-like domain-containing protein PA3033","synonymous_variantMODERATE"]
[7739,"NC_000962",610120,"T","G","2788.08","89.0","0.98",{"$nulls":10},"hypothetical protein","putative membrane protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",611373,"T","C","3016.37","95.0","0.99","Synon","caa","caG","702A>G","Gln234Gln",null,"fig|83332.12.peg.576","Rv0519c",null,"putative membrane protein","hypothetical protein","Dimethylglycine N-methyltransferase (EC 2.1.1.161)","synonymous_variantMODERATE"]
["MP2","NC_000962",611373,"T","C","7368.03","218.0","1.00","Synon","caa","caG","702A>G","Gln234Gln",null,"fig|83332.12.peg.576","Rv0519c",null,"putative membrane protein","hypothetical protein","Dimethylglycine N-methyltransferase (EC 2.1.1.161)","synonymous_variantLOW"]
["G01222","NC_000962",630722,"G","C","1150.56","37.0","1.00","Nonsyn","cgg","cCg","683G>C","Arg228Pro",null,"fig|83332.12.peg.597","Rv0538",null,"Uncharacterized protein Rv0538","putative membrane protein","Glycosyltransferase","missense_variantMODERATE"]
["MP1","NC_000962",630722,"G","C","3850.2","113.0","0.99","Nonsyn","cgg","cCg","683G>C","Arg228Pro",null,"fig|83332.12.peg.597","Rv0538",null,"Uncharacterized protein Rv0538","putative membrane protein","Glycosyltransferase","missense_variantMODERATE"]
[64,"NC_000962",637319,"G","A","2453.46","78.0","0.96","Nonsyn","cct","Tct","145C>T","Pro49Ser",null,"fig|83332.12.peg.604","Rv0545c","pitA","Probable low-affinity inorganic phosphate transporter","putative membrane protein","FIG020377: hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",637319,"G","A","7565.77","218.0","1.00","Nonsyn","cct","Tct","145C>T","Pro49Ser",null,"fig|83332.12.peg.604","Rv0545c","pitA","Probable low-affinity inorganic phosphate transporter","putative membrane protein","FIG020377: hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",640129,"C","T","4498.86","139.0","1.00",{"$nulls":10},"Naphthoate synthase (EC 4.1.3.36)","toxin VapC3 @ Toxin 1, PIN domain","intergenic_regionMODIFIER"]
[7011,"NC_000962",640365,"CAG","CG","2492.32","91.0","0.99","Deletion","gctgga","gCGga","243delT","Ala81fs","yes","fig|83332.12.peg.608","Rv0549c",null,"toxin VapC3 @ Toxin 1, PIN domain","Naphthoate synthase (EC 4.1.3.36)","antitoxin vapB3 @ Antitoxin 1a","frameshift_variantHIGH"]
["G01492","NC_000962",644439,"C","T","10715.6","348.0","0.99","Synon","gcc","gcT","1560C>T","Ala520Ala",null,"fig|83332.12.peg.612","Rv0552",null,"Exoenzymes regulatory protein AepA precursor","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD8","O-succinylbenzoate synthase (EC 4.2.1.113)","synonymous_variantLOW"]
["G01222","NC_000962",648002,"T","G",{"v":961994,"d":"961,994"},"30.0","1.00","Nonsyn","ctc","cGc","44T>G","Leu15Arg",null,"fig|83332.12.peg.616","Rv0556",null,"putative membrane protein","2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)","Mannosyltransferase PimB","missense_variantMODERATE"]
["MP1","NC_000962",648002,"T","G","10008.4","292.0","1.00","Nonsyn","ctc","cGc","44T>G","Leu15Arg",null,"fig|83332.12.peg.616","Rv0556",null,"putative membrane protein","2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)","Mannosyltransferase PimB","missense_variantMODERATE"]
[64,"NC_000962",648856,"T","C","1200.21","37.0","1.00","Synon","ggt","ggC","312T>C","Gly104Gly",null,"fig|83332.12.peg.617","Rv0557","pimB","Mannosyltransferase PimB","putative membrane protein","Demethylmenaquinone methyltransferase (EC 2.1.1.163)","synonymous_variantLOW"]
["G01492","NC_000962",650685,"C","T","10062.4","336.0","0.97","Nonsyn","gcg","Acg","61G>A","Ala21Thr",null,"fig|83332.12.peg.619","Rv0559c",null,"putative secreted protein","Demethylmenaquinone methyltransferase (EC 2.1.1.163)","Possible benzoquinone methyltransferase","missense_variantMODERATE"]
[64,"NC_000962",650685,"C","T",{"v":485309,"d":"485,309"},"18.0","0.90","Nonsyn","gcg","Acg","61G>A","Ala21Thr",null,"fig|83332.12.peg.619","Rv0559c",null,"putative secreted protein","Demethylmenaquinone methyltransferase (EC 2.1.1.163)","Possible benzoquinone methyltransferase","missense_variantMODERATE"]
[7739,"NC_000962",655986,"T","G","3024.4","98.0","0.99",{"$nulls":10},"Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)","Monooxygenase, flavin-binding family","intergenic_regionMODIFIER"]
["G01498","NC_000962",657578,"A","G","2054.36","67.0","1.00","Synon","gat","gaC","462T>C","AsMP154Asp",null,"fig|83332.12.peg.626","Rv0566c",null,"UPF0234 protein Yitk","Monooxygenase, flavin-binding family","tRNA-Tyr-GTA","synonymous_variantLOW"]
["G01491","NC_000962",658732,"C","T","3556.11","113.0","0.96","Nonsyn","ctc","Ttc","412C>T","Leu138Phe",null,"fig|83332.12.peg.628","Rv0567",null,"O-methyltransferase","hypothetical protein","Cytochrome P450 135B1","missense_variantMODERATE"]
[54,"NC_000962",658732,"C","T","8533.25","294.0","0.99","Nonsyn","ctc","Ttc","412C>T","Leu138Phe",null,"fig|83332.12.peg.628","Rv0567",null,"O-methyltransferase","hypothetical protein","Cytochrome P450 135B1","missense_variantMODERATE"]
["MP2","NC_000962",658923,"C","G","7407.4","219.0","1.00","Nonsyn","ttc","ttG","603C>G","Phe201Leu",null,"fig|83332.12.peg.628","Rv0567",null,"O-methyltransferase","hypothetical protein","Cytochrome P450 135B1","missense_variantMODERATE"]
[58,"NC_000962",659341,"T","C","3276.39","100.0","0.99",{"$nulls":10},"O-methyltransferase","Cytochrome P450 135B1","intergenic_regionLOW"]
[7011,"NC_000962",662911,"T","C","2811.79","96.0","1.00","Synon","gct","gcC","1617T>C","Ala539Ala",null,"fig|83332.12.peg.631","Rv0570","nrdZ","Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)","hypothetical protein","Phosphoribosyl transferase domain protein","synonymous_variantLOW"]
[7739,"NC_000962",662911,"T","C","3324.68","119.0","0.99","Synon","gct","gcC","1617T>C","Ala539Ala",null,"fig|83332.12.peg.631","Rv0570","nrdZ","Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)","hypothetical protein","Phosphoribosyl transferase domain protein","synonymous_variantLOW"]
["G01498","NC_000962",665293,"A","G","2956.57","94.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionLOW"]
[64,"NC_000962",668707,"CGA","CGGA","2648.08","82.0","0.89","Insertion","ttcgcc","tTCCGcc","1037_1038insC","Phe346_Ala347fs","yes","fig|83332.12.peg.638","Rv0575c",null,"Oxidoreductase","Capsule biosynthesis protein CapA","Transcriptional regulator, ArsR family / Ligand-binding SRPBCC domain protein family / DinB domain","frameshift_variantHIGH"]
["G01222","NC_000962",669398,"T","C",{"v":413064,"d":"413,064"},"13.0","1.00","Synon","caa","caG","348A>G","Gln116Gln",null,"fig|83332.12.peg.638","Rv0575c",null,"Oxidoreductase","Capsule biosynthesis protein CapA","Transcriptional regulator, ArsR family / Ligand-binding SRPBCC domain protein family / DinB domain","synonymous_variantLOW"]
["MP1","NC_000962",669398,"T","C","7132.77","207.0","1.00","Synon","caa","caG","348A>G","Gln116Gln",null,"fig|83332.12.peg.638","Rv0575c",null,"Oxidoreductase","Capsule biosynthesis protein CapA","Transcriptional regulator, ArsR family / Ligand-binding SRPBCC domain protein family / DinB domain","synonymous_variantLOW"]
[64,"NC_000962",670674,"A","G",{"v":803137,"d":"803,137"},"24.0","1.00","Nonsyn","cag","cGg","836A>G","Gln279Arg",null,"fig|83332.12.peg.639","Rv0576",null,"Transcriptional regulator, ArsR family / Ligand-binding SRPBCC domain protein family / DinB domain","Oxidoreductase","27 kDa antigen Cfp30B","missense_variantMODERATE"]
[7739,"NC_000962",673111,"G","T",{"v":889503,"d":"889,503"},"6.0","1.00","Nonsyn","cac","Aac","2806C>A","His936Asn",null,"fig|83332.12.peg.641","Rv0578c","PE_PGRS7","PE_PGRS family protein ","27 kDa antigen Cfp30B","FIG00825218: hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",677701,"C","T","3314.56","110.0","0.94",{"$nulls":10},"hypothetical protein","antitoxin VapB26 @ Antitoxin to Toxin 1, PIN domain","intergenic_regionMODIFIER"]
[7011,"NC_000962",677701,"C","T","2976.55","94.0","0.99",{"$nulls":10},"hypothetical protein","antitoxin VapB26 @ Antitoxin to Toxin 1, PIN domain","intergenic_regionMODIFIER"]
["G01492","NC_000962",678698,"G","A","10266.0","339.0","0.97","Synon","tcc","tcT","378C>T","Ser126Ser",null,"fig|83332.12.peg.647","Rv0583c","lpqN","PROBABLE CONSERVED LIPOPROTEIN LPQN","toxin VapC26 @ Toxin 1, PIN domain","Alpha-1,2-mannosidase","synonymous_variantLOW"]
["G01222","NC_000962",682151,"C","A","626.98","20.0","1.00","Nonsyn","gcc","Tcc","2122G>T","Ala708Ser",null,"fig|83332.12.peg.649","Rv0585c",null,"putative membrane protein","Alpha-1,2-mannosidase","Transcriptional regulator, GntR family","missense_variantMODERATE"]
["MP1","NC_000962",682151,"C","A","6761.54","201.0","1.00","Nonsyn","gcc","Tcc","2122G>T","Ala708Ser",null,"fig|83332.12.peg.649","Rv0585c",null,"putative membrane protein","Alpha-1,2-mannosidase","Transcriptional regulator, GntR family","missense_variantMODERATE"]
[64,"NC_000962",684290,"A","G","2162.52","68.0","0.96",{"$nulls":10},"putative membrane protein","Transcriptional regulator, GntR family","intergenic_regionMODERATE"]
["G01498","NC_000962",685461,"C","G","1586.33","51.0","1.00","Synon","gcc","gcG","333C>G","Ala111Ala",null,"fig|83332.12.peg.651","Rv0587","yrbE2A","Conserved hypothetical integral membrane protein YrbEa","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEb","synonymous_variantLOW"]
[7011,"NC_000962",685608,"T","C","2798.51","87.0","1.00","Synon","ctt","ctC","480T>C","Leu160Leu",null,"fig|83332.12.peg.651","Rv0587","yrbE2A","Conserved hypothetical integral membrane protein YrbEa","Transcriptional regulator, GntR family","Conserved hypothetical integral membrane protein YrbEb","synonymous_variantLOW"]
["G01492","NC_000962",686557,"C","T","10264.9","323.0","0.99","Synon","aac","aaT","630C>T","Asn210Asn",null,"fig|83332.12.peg.652","Rv0588","yrbE2B","Conserved hypothetical integral membrane protein YrbEb","Conserved hypothetical integral membrane protein YrbEa","MCE-family protein MceA","synonymous_variantLOW"]
["G01498","NC_000962",686557,"C","T","1784.13","58.0","1.00","Synon","aac","aaT","630C>T","Asn210Asn",null,"fig|83332.12.peg.652","Rv0588","yrbE2B","Conserved hypothetical integral membrane protein YrbEb","Conserved hypothetical integral membrane protein YrbEa","MCE-family protein MceA","synonymous_variantLOW"]
["G01491","NC_000962",686972,"T","C","4247.21","135.0","0.99","Nonsyn","ttc","tCc","107T>C","Phe36Ser",null,"fig|83332.12.peg.653","Rv0589","mce2A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
[54,"NC_000962",686972,"T","C","5354.4","179.0","0.92","Nonsyn","ttc","tCc","107T>C","Phe36Ser",null,"fig|83332.12.peg.653","Rv0589","mce2A","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceB","missense_variantMODERATE"]
["MP2","NC_000962",688502,"C","T","8717.65","254.0","1.00","Synon","agc","agT","471C>T","Ser157Ser",null,"fig|83332.12.peg.654","Rv0590","mce2B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceB","synonymous_variantLOW"]
[58,"NC_000962",688792,"TGG","TGGG",{"v":247275,"d":"247,275"},"10.0","0.77","Insertion","ctgggg","cTGGGgg","764_765insG","Gly255_Arg256fs","yes","fig|83332.12.peg.654","Rv0590","mce2B","MCE-family protein MceB","MCE-family protein MceA","MCE-family protein MceB","frameshift_variantHIGH"]
[7011,"NC_000962",690465,"T","G","2654.44","84.0","1.00","Synon","ctt","ctG","1407T>G","Leu469Leu",null,"fig|83332.12.peg.656","Rv0591","mce2C","MCE-family protein MceC","MCE-family protein MceB","MCE-family protein MceD","synonymous_variantLOW"]
["G01492","NC_000962",693003,"A","G","8569.12","284.0","0.97","Nonsyn","gac","gGc","890A>G","AsMP297Gly",null,"fig|83332.12.peg.658","Rv0593","lprL","MCE-family lipoprotein MceE","MCE-family protein MceD","MCE-family protein MceF","missense_variantMODERATE"]
["G01222","NC_000962",698968,"G","A",{"v":778227,"d":"778,227"},"30.0","0.97","Synon","ggc","ggT","27C>T","Gly9Gly",null,"fig|83332.12.peg.667","Rv0601c",null,"Two-component system sensor histidine kinase","Two-component system sensor histidine kinase","Two-component transcriptional response regulator, OmpR family","synonymous_variantLOW"]
["MP2","NC_000962",698968,"G","A","5971.89","181.0","0.98","Synon","ggc","ggT","27C>T","Gly9Gly",null,"fig|83332.12.peg.667","Rv0601c",null,"Two-component system sensor histidine kinase","Two-component system sensor histidine kinase","Two-component transcriptional response regulator, OmpR family","synonymous_variantLOW"]
["G01222","NC_000962",700776,"T","C",{"v":938322,"d":"938,322"},"31.0","1.00","Nonsyn","tcg","Ccg","514T>C","Ser172Pro",null,"fig|83332.12.peg.670","Rv0604","lpqO","protein of unknown function LppY and LpqO","hypothetical protein","hypothetical protein","missense_variantHIGH"]
["MP1","NC_000962",700776,"T","C","3859.14","114.0","1.00","Nonsyn","tcg","Ccg","514T>C","Ser172Pro",null,"fig|83332.12.peg.670","Rv0604","lpqO","protein of unknown function LppY and LpqO","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",706841,"C","A",{"v":800372,"d":"800,372"},"26.0","1.00","Nonsyn","gcg","gAg","461C>A","Ala154Glu",null,"fig|83332.12.peg.681","Rv0612",null,"hypothetical protein Rv0612 Rv0609A","hypothetical protein","Uncharacterized protein Rv0613c","missense_variantMODERATE"]
[7739,"NC_000962",712192,"GC","GAC","2931.53","99.0","0.92","Insertion","ctgccc","ctGACcc","658_659insA","Pro220_Thr221fs","yes","fig|83332.12.peg.689","Rv0618","galTa","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)","toxin VapC29 @ Toxin 1, PIN domain","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)","frameshift_variantHIGH"]
["G01498","NC_000962",712693,"A","G","3437.65","109.0","0.98","Nonsyn","acc","Gcc","445A>G","Thr149Ala",null,"fig|83332.12.peg.690","Rv0619","galTb","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)","Galactokinase (EC 2.7.1.6)","missense_variantMODERATE"]
["G01491","NC_000962",713310,"T","C","9032.54","282.0","1.00","Nonsyn","tgt","Cgt","595T>C","Cys199Arg",null,"fig|83332.12.peg.691","Rv0620","galK","Galactokinase (EC 2.7.1.6)","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",713310,"T","C","1332.49","42.0","0.98","Nonsyn","tgt","Cgt","595T>C","Cys199Arg",null,"fig|83332.12.peg.691","Rv0620","galK","Galactokinase (EC 2.7.1.6)","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",713802,"C","T","1719.24","57.0","0.98","Nonsyn","cgt","Tgt","1087C>T","Arg363Cys",null,"fig|83332.12.peg.691","Rv0620","galK","Galactokinase (EC 2.7.1.6)","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)","putative membrane protein","missense_variantMODERATE"]
["MP1","NC_000962",713802,"C","T","2524.97","85.0","0.99","Nonsyn","cgt","Tgt","1087C>T","Arg363Cys",null,"fig|83332.12.peg.691","Rv0620","galK","Galactokinase (EC 2.7.1.6)","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)","putative membrane protein","missense_variantMODERATE"]
[64,"NC_000962",715266,"A","G","3130.59","95.0","0.99","Nonsyn","tga","tgG","816A>G","Ter272Trpext*?",null,"fig|83332.12.peg.693","Rv0621",null,"putative membrane protein","hypothetical protein","putative membrane protein","stop_lostHIGH"]
["MP2","NC_000962",715796,"T","G","7094.11","208.0","1.00","Nonsyn","tac","Gac","427T>G","Tyr143Asp",null,"fig|83332.12.peg.694","Rv0622",null,"putative membrane protein","putative membrane protein","hypothetical protein","missense_variantLOW"]
[7011,"NC_000962",722583,"C","A","2556.84","85.0","1.00","Nonsyn","gtc","Ttc","2431G>T","Val811Phe",null,"fig|83332.12.peg.702","Rv0630c","recB","Exodeoxyribonuclease V beta chain (EC 3.1.11.5)","Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)","Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)","missense_variantMODERATE"]
["G01492","NC_000962",723157,"C","A","12654.2","407.0","0.98","Synon","gtg","gtT","1857G>T","Val619Val",null,"fig|83332.12.peg.702","Rv0630c","recB","Exodeoxyribonuclease V beta chain (EC 3.1.11.5)","Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)","Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)","synonymous_variantMODERATE"]
["G01222","NC_000962",729114,"G","A","504.91","17.0","1.00","Synon","ggc","ggT","165C>T","Gly55Gly",null,"fig|83332.12.peg.704","Rv0632c","echA3","Enoyl-CoA hydratase Rv0632c","Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)","putative membrane protein","synonymous_variantLOW"]
["MP1","NC_000962",729114,"G","A","7959.15","231.0","1.00","Synon","ggc","ggT","165C>T","Gly55Gly",null,"fig|83332.12.peg.704","Rv0632c","echA3","Enoyl-CoA hydratase Rv0632c","Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)","putative membrane protein","synonymous_variantLOW"]
[54,"NC_000962",729114,"G","A","5481.34","173.0","0.98","Synon","ggc","ggT","165C>T","Gly55Gly",null,"fig|83332.12.peg.704","Rv0632c","echA3","Enoyl-CoA hydratase Rv0632c","Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)","putative membrane protein","synonymous_variantLOW"]
["MP2","NC_000962",736919,"G","T","9294.61","272.0","1.00","Nonsyn","ttc","ttA","276C>A","Phe92Leu",null,"fig|83332.12.peg.717","Rv0642c","mmaA4","Methoxy mycolic acid synthase MmaA4","LSU ribosomal protein L1p (L10Ae)","Methoxy mycolic acid synthase MmaA3 (EC 2.1.1.79)","missense_variantMODERATE"]
[58,"NC_000962",738820,"C","A","2570.34","85.0","0.99","Nonsyn","cgc","cTc","341G>T","Arg114Leu",null,"fig|83332.12.peg.719","Rv0644c","mmaA2","Methoxy mycolic acid synthase MmaA2 (EC 2.1.1.79)","Methoxy mycolic acid synthase MmaA3 (EC 2.1.1.79)","Methoxy mycolic acid synthase MmaA1 (EC 2.1.1.79)","missense_variantMODERATE"]
[7011,"NC_000962",739369,"G","T","3916.87","121.0","1.00","Synon","cgc","cgA","819C>A","Arg273Arg",null,"fig|83332.12.peg.720","Rv0645c","mmaA1","Methoxy mycolic acid synthase MmaA1 (EC 2.1.1.79)","Methoxy mycolic acid synthase MmaA2 (EC 2.1.1.79)","FIG01381021: Hydrolase, alpha/beta fold family protein","synonymous_variantLOW"]
["G01492","NC_000962",741163,"G","A","12578.8","411.0","0.99","Synon","gac","gaT","1335C>T","Asp445Asp",null,"fig|83332.12.peg.722","Rv0647c",null,"Uncharacterized ABC1 family protein Rv0647c","FIG01381021: Hydrolase, alpha/beta fold family protein","alpha-mannosidase (EC 3.2.1.24)","synonymous_variantLOW"]
["G01222","NC_000962",754186,"A","G",{"v":926862,"d":"926,862"},"29.0","1.00","Nonsyn","ctc","cCc","224T>C","Leu75Pro",null,"fig|83332.12.peg.734","Rv0658c",null,"putative membrane protein","VapB6 protein (antitoxin to VapC6) @ Antitoxin to Toxin 1, PIN domain","Death on curing protein, Doc toxin @ Doc toxin MazF2 in Mycobacteria","missense_variantLOW"]
[7011,"NC_000962",754186,"A","G","1248.75","40.0","1.00","Nonsyn","ctc","cCc","224T>C","Leu75Pro",null,"fig|83332.12.peg.734","Rv0658c",null,"putative membrane protein","VapB6 protein (antitoxin to VapC6) @ Antitoxin to Toxin 1, PIN domain","Death on curing protein, Doc toxin @ Doc toxin MazF2 in Mycobacteria","missense_variantLOW"]
["MP2","NC_000962",757182,"A","G","6670.0","195.0","1.00","Nonsyn","gac","gGc","1046A>G","Asp349Gly",null,"fig|83332.12.peg.739","Rv0663","atsD","Arylsulfatase (EC 3.1.6.1)","antitoxin VapB7 @ Antitoxin to Toxin 1, PIN domain","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",757182,"A","G","6733.93","197.0","1.00","Nonsyn","gac","gGc","1046A>G","Asp349Gly",null,"fig|83332.12.peg.739","Rv0663","atsD","Arylsulfatase (EC 3.1.6.1)","antitoxin VapB7 @ Antitoxin to Toxin 1, PIN domain","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",763031,"T","C","1082.93","47.0","0.55","Synon","gct","gcC","2997T>C","Ala999Ala",null,"fig|83332.12.peg.742","Rv0667","rpoB","DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)","Toxin","DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)","synonymous_variantLOW"]
[7739,"NC_000962",767414,"G","A","1974.11","61.0","1.00","Nonsyn","tcg","tTg","20C>T","Ser7Leu",null,"fig|83332.12.peg.744",null,null,"hypothetical protein","DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",775639,"T","C","3160.4","108.0","1.00","Nonsyn","att","Gtt","2764A>G","Ile922Val",null,"fig|83332.12.peg.753","Rv0676c","mmpL5","Transmembrane transport protein MmpL5","Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17)","Membrane protein MmpS5","missense_variantMODERATE"]
["G01491","NC_000962",776100,"G","A","2557.55","85.0","1.00","Nonsyn","acc","aTc","2303C>T","Thr768Ile",null,"fig|83332.12.peg.753","Rv0676c","mmpL5","Transmembrane transport protein MmpL5","Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17)","Membrane protein MmpS5","missense_variantMODERATE"]
[54,"NC_000962",776100,"G","A","12145.8","402.0","0.99","Nonsyn","acc","aTc","2303C>T","Thr768Ile",null,"fig|83332.12.peg.753","Rv0676c","mmpL5","Transmembrane transport protein MmpL5","Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17)","Membrane protein MmpS5","missense_variantLOW"]
["MP2","NC_000962",778854,"C","G","8611.77","255.0","0.99","Nonsyn","gtc","Ctc","52G>C","Val18Leu",null,"fig|83332.12.peg.754","Rv0677c","mmpS5","Membrane protein MmpS5","Transmembrane transport protein MmpL5","MarR family transcriptional regulator associated with MmpL5/MmpS5 efflux system","missense_variantMODERATE"]
[58,"NC_000962",779685,"A","G",{"v":366447,"d":"366,447"},"14.0","1.00","Nonsyn","gtc","gCc","122T>C","Val41Ala",null,"fig|83332.12.peg.756","Rv0679c",null,"hypothetical protein","MarR family transcriptional regulator associated with MmpL5/MmpS5 efflux system","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",779685,"A","G",{"v":634829,"d":"634,829"},"22.0","1.00","Nonsyn","gtc","gCc","122T>C","Val41Ala",null,"fig|83332.12.peg.756","Rv0679c",null,"hypothetical protein","MarR family transcriptional regulator associated with MmpL5/MmpS5 efflux system","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",781395,"T","C","8388.79","249.0","1.00",{"$nulls":10},"Transcriptional regulator, AcrR family","SSU ribosomal protein S12p (S23e)","intergenic_regionMODIFIER"]
[7011,"NC_000962",781922,"A","G","2924.26","95.0","0.99","Synon","aaa","aaG","363A>G","Lys121Lys",null,"fig|83332.12.peg.760","Rv0682","rpsL","SSU ribosomal protein S12p (S23e)","Transcriptional regulator, AcrR family","SSU ribosomal protein S7p (S5e)","synonymous_variantLOW"]
["G01492","NC_000962",782997,"G","A","11731.1","374.0","0.99","Synon","gcg","gcA","513G>A","Ala171Ala",null,"fig|83332.12.peg.762","Rv0684","fusA1","Translation elongation factor G","SSU ribosomal protein S7p (S5e)","Translation elongation factor Tu","synonymous_variantLOW"]
["G01222","NC_000962",787352,"C","T","1069.55","33.0","1.00","Nonsyn","gcc","gTc","221C>T","Ala74Val",null,"fig|83332.12.peg.765","Rv0687","fabG","Oxidoreductase, short-chain dehydrogenase/reductase family","FIG025093: Probable membrane protein","Ferredoxin reductase","missense_variantMODERATE"]
["MP1","NC_000962",787352,"C","T","6936.02","206.0","1.00","Nonsyn","gcc","gTc","221C>T","Ala74Val",null,"fig|83332.12.peg.765","Rv0687","fabG","Oxidoreductase, short-chain dehydrogenase/reductase family","FIG025093: Probable membrane protein","Ferredoxin reductase","missense_variantMODERATE"]
[64,"NC_000962",789932,"TCCGACGG","TG",{"v":762408,"d":"762,408"},"26.0","1.00","Deletion",{"$nulls":9},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",799136,"ACCCCCCCT","ACCCCCCT","2580.75","90.0","0.99","Deletion",{"$nulls":9},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
[58,"NC_000962",799136,"ACCCCCCCT","ACCCCCCT",{"v":667374,"d":"667,374"},"24.0","1.00","Deletion",{"$nulls":9},"hypothetical protein","hypothetical protein","intergenic_regionLOW"]
[7011,"NC_000962",806454,"G","T","2598.58","79.0","1.00","Synon","ctg","ctT","120G>T","Leu40Leu",null,"fig|83332.12.peg.792","Rv0711","atsA","Arylsulfatase (EC 3.1.6.1)","SSU ribosomal protein S17p (S11e)","Sulfatase modifying factor 1 precursor (C-alpha-formyglycine- generating enzyme 1)","synonymous_variantMODERATE"]
["G01492","NC_000962",815851,"A","G","10943.6","350.0","0.99","Synon","cga","cgG","126A>G","Arg42Arg",null,"fig|83332.12.peg.807","Rv0724","sppA","Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase)","LSU ribosomal protein L15p (L27Ae)","O-methyltransferase","synonymous_variantLOW"]
["G01222","NC_000962",817299,"G","A",{"v":816565,"d":"816,565"},"27.0","1.00","Nonsyn","cgt","cAt","1574G>A","Arg525His",null,"fig|83332.12.peg.807","Rv0724","sppA","Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase)","LSU ribosomal protein L15p (L27Ae)","O-methyltransferase","missense_variantMODERATE"]
[7739,"NC_000962",817299,"G","A","3174.89","106.0","0.97","Nonsyn","cgt","cAt","1574G>A","Arg525His",null,"fig|83332.12.peg.807","Rv0724","sppA","Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase)","LSU ribosomal protein L15p (L27Ae)","O-methyltransferase","missense_variantMODERATE"]
["MP2","NC_000962",818161,"G","C","7035.41","211.0","1.00","Nonsyn","act","aGt","284C>G","Thr95Ser",null,"fig|83332.12.peg.808","Rv0725c",null,"O-methyltransferase","Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase)","O-Methyltransferase involved in polyketide biosynthesis","missense_variantMODERATE"]
[58,"NC_000962",820483,"G","T","2879.74","94.0","0.97","Nonsyn","gcc","gAc","17C>A","Ala6Asp",null,"fig|83332.12.peg.810","Rv0727c","fucA","Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases","O-Methyltransferase involved in polyketide biosynthesis","D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)","missense_variantMODERATE"]
[7011,"NC_000962",820752,"C","T","3067.84","98.0","0.99","Nonsyn","cgc","cAc","647G>A","Arg216His",null,"fig|83332.12.peg.811","Rv0728c","serA2","D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)","Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases","Putative xylulose kinase (EC 2.7.1.17)","missense_variantMODERATE"]
[7739,"NC_000962",820752,"C","T","2153.32","70.0","1.00","Nonsyn","cgc","cAc","647G>A","Arg216His",null,"fig|83332.12.peg.811","Rv0728c","serA2","D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)","Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases","Putative xylulose kinase (EC 2.7.1.17)","missense_variantMODERATE"]
["G01498","NC_000962",826475,"G","A","1234.67","45.0","0.90","Synon","gag","gaA","303G>A","Glu101Glu",null,"fig|83332.12.peg.816","Rv0733","adk","Adenylate kinase (EC 2.7.4.3)","Protein translocase subunit SecY","Methionine aminopeptidase (EC 3.4.11.18)","synonymous_variantLOW"]
["G01491","NC_000962",834779,"G","T","3889.47","125.0","0.98","Synon","cgc","cgA","201C>A","Arg67Arg",null,"fig|83332.12.peg.830","Rv0744c",null,"Putative transcriptional regulatory protein","hypothetical protein","3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)","synonymous_variantMODERATE"]
[54,"NC_000962",834779,"G","T","4293.5","141.0","1.00","Synon","cgc","cgA","201C>A","Arg67Arg",null,"fig|83332.12.peg.830","Rv0744c",null,"Putative transcriptional regulatory protein","hypothetical protein","3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)","synonymous_variantMODERATE"]
["MP2","NC_000962",837033,"A","G","1284.21","38.0","1.00","Nonsyn","acc","Gcc","1333A>G","Thr445Ala",null,"fig|83332.12.peg.833","Rv0746","PE_PGRS9","PE_PGRS family protein ","hypothetical protein","PE_PGRS family protein ","missense_variantMODERATE"]
[58,"NC_000962",841764,"G","C","4345.39","130.0","0.99","Synon","acc","acG","108C>G","Thr36Thr",null,"fig|83332.12.peg.837","Rv0749A",null,"hypothetical protein","toxin VapC31 @ Toxin 1, PIN domain","hypothetical protein","synonymous_variantMODERATE"]
[7011,"NC_000962",843242,"C","T","3447.0","105.0","1.00","Synon","tag","taA","1173G>A","Ter391Ter",null,"fig|83332.12.peg.841","Rv0752c","fadE9","Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) @ Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE9","3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)","Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)","stop_retained_variantLOW"]
[54,"NC_000962",843242,"C","T","5137.75","170.0","1.00","Synon","tag","taA","1173G>A","Ter391Ter",null,"fig|83332.12.peg.841","Rv0752c","fadE9","Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) @ Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE9","3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)","Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)","stop_retained_variantLOW"]
[7011,"NC_000962",847995,"T","C","1799.46","59.0","1.00",{"$nulls":10},"PE_PGRS family protein ","PPE family protein, MPTR subgroup ","intergenic_regionMODIFIER"]
["G01492","NC_000962",848407,"C","T","6193.67","204.0","0.97","Nonsyn","agg","aAg","1637G>A","Arg546Lys",null,"fig|83332.12.peg.844","Rv0755c","PPE12","PPE family protein, MPTR subgroup ","PE_PGRS family protein ","Mobile element protein","missense_variantMODERATE"]
["G01222","NC_000962",848466,"G","T",{"v":921359,"d":"921,359"},"29.0","1.00","Synon","ggc","ggA","1578C>A","Gly526Gly",null,"fig|83332.12.peg.844","Rv0755c","PPE12","PPE family protein, MPTR subgroup ","PE_PGRS family protein ","Mobile element protein","synonymous_variantMODERATE"]
["MP1","NC_000962",848466,"G","T","6295.57","184.0","0.99","Synon","ggc","ggA","1578C>A","Gly526Gly",null,"fig|83332.12.peg.844","Rv0755c","PPE12","PPE family protein, MPTR subgroup ","PE_PGRS family protein ","Mobile element protein","synonymous_variantLOW"]
[64,"NC_000962",850983,"T","G","2025.66","66.0","0.93","Nonsyn","acg","Ccg","484A>C","Thr162Pro",null,"fig|83332.12.peg.846","Rv0756c",null,"hypothetical protein","tRNA-Thr-TGT","DNA-binding response regulator PhoP","missense_variantLOW"]
[7739,"NC_000962",851562,"G","A","4254.82","126.0","1.00",{"$nulls":10},"hypothetical protein","DNA-binding response regulator PhoP","intergenic_regionMODIFIER"]
["G01498","NC_000962",852606,"GG","AT","2456.49","80.0","1.00","Nonsyn","ggt","ATt","130GG>AT","Gly44Ile",null,"fig|83332.12.peg.848","Rv0758","phoR","Two-component system phosphate sensor kinase, PhoR","DNA-binding response regulator PhoP","HIT family protein","missense_variantMODERATE"]
["G01491","NC_000962",852910,"C","T","3990.87","130.0","1.00","Nonsyn","ccc","cTc","434C>T","Pro145Leu",null,"fig|83332.12.peg.848","Rv0758","phoR","Two-component system phosphate sensor kinase, PhoR","DNA-binding response regulator PhoP","HIT family protein","missense_variantMODERATE"]
["G01492","NC_000962",852910,"C","T","8705.38","282.0","1.00","Nonsyn","ccc","cTc","434C>T","Pro145Leu",null,"fig|83332.12.peg.848","Rv0758","phoR","Two-component system phosphate sensor kinase, PhoR","DNA-binding response regulator PhoP","HIT family protein","missense_variantMODERATE"]
["G01222","NC_000962",853088,"G","T","1081.76","34.0","1.00","Synon","cgg","cgT","612G>T","Arg204Arg",null,"fig|83332.12.peg.848","Rv0758","phoR","Two-component system phosphate sensor kinase, PhoR","DNA-binding response regulator PhoP","HIT family protein","synonymous_variantMODIFIER"]
[54,"NC_000962",853088,"G","T","1168.27","41.0","0.98","Synon","cgg","cgT","612G>T","Arg204Arg",null,"fig|83332.12.peg.848","Rv0758","phoR","Two-component system phosphate sensor kinase, PhoR","DNA-binding response regulator PhoP","HIT family protein","synonymous_variantMODIFIER"]
["MP2","NC_000962",857696,"A","G","8763.02","256.0","1.00","Synon","gct","gcC","342T>C","Ala114Ala",null,"fig|83332.12.peg.854","Rv0764c","cyp51","Lanosterol 14-alpha demethylase @ Cytochrome P450 51 (EC 1.14.13.70)","Ferredoxin","Oxidoreductase, short-chain dehydrogenase/reductase family","synonymous_variantLOW"]
[58,"NC_000962",858531,"C","T","1132.05","37.0","0.97","Nonsyn","gca","Aca","334G>A","Ala112Thr",null,"fig|83332.12.peg.855","Rv0765c",null,"Oxidoreductase, short-chain dehydrogenase/reductase family","Lanosterol 14-alpha demethylase @ Cytochrome P450 51 (EC 1.14.13.70)","Steroid-monooxygenase","missense_variantMODERATE"]
[7011,"NC_000962",866345,"T","C","3703.94","116.0","0.98","Nonsyn","att","Gtt","1021A>G","Ile341Val",null,"fig|83332.12.peg.863","Rv0773c","ggtA","Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)","Phosphoribosylamine--glycine ligase (EC 6.3.4.13)","Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)","missense_variantMODERATE"]
["G01492","NC_000962",867574,"C","T","11831.1","395.0","0.97","Nonsyn","gca","Aca","766G>A","Ala256Thr",null,"fig|83332.12.peg.864","Rv0774c",null,"Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)","Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
["G01222","NC_000962",871271,"A","C",{"v":825467,"d":"825,467"},"30.0","1.00","Nonsyn","acg","Ccg","1264A>C","Thr422Pro",null,"fig|83332.12.peg.867","Rv0777","purB","Adenylosuccinate lyase (EC 4.3.2.2) @ SAICAR lyase (EC 4.3.2.2)","FIG00823336: hypothetical protein","Cytochrome P450 126","missense_variantMODERATE"]
["G01491","NC_000962",871271,"A","C","5545.02","172.0","0.99","Nonsyn","acg","Ccg","1264A>C","Thr422Pro",null,"fig|83332.12.peg.867","Rv0777","purB","Adenylosuccinate lyase (EC 4.3.2.2) @ SAICAR lyase (EC 4.3.2.2)","FIG00823336: hypothetical protein","Cytochrome P450 126","missense_variantMODERATE"]
[54,"NC_000962",871271,"A","C","1432.15","48.0","1.00","Nonsyn","acg","Ccg","1264A>C","Thr422Pro",null,"fig|83332.12.peg.867","Rv0777","purB","Adenylosuccinate lyase (EC 4.3.2.2) @ SAICAR lyase (EC 4.3.2.2)","FIG00823336: hypothetical protein","Cytochrome P450 126","missense_variantMODERATE"]
["MP2","NC_000962",872024,"C","T","6897.89","205.0","1.00","Synon","gcc","gcT","612C>T","Ala204Ala",null,"fig|83332.12.peg.868","Rv0778","cyMP126","Cytochrome P450 126","Adenylosuccinate lyase (EC 4.3.2.2) @ SAICAR lyase (EC 4.3.2.2)","hypothetical protein Rv0779c","synonymous_variantLOW"]
[58,"NC_000962",874792,"A","C",{"v":912843,"d":"912,843"},"31.0","0.91","Nonsyn","gag","gCg","527A>C","Glu176Ala",null,"fig|83332.12.peg.871","Rv0781","ptrBa","Protease II (EC 3.4.21.83)","Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)","Protease II (EC 3.4.21.83)","missense_variantHIGH"]
[7011,"NC_000962",879463,"G","A","2614.39","84.0","1.00","Nonsyn","gac","Aac","103G>A","Asp35Asn",null,"fig|83332.12.peg.877","Rv0785",null,"Fumarate/succinate/L-aspartate dehydrogenases","hypothetical protein Rv0784","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",879738,"CTT","CT","2284.79","77.0","0.94","Deletion","atcttt","atCTt","380delT","Phe127fs","yes","fig|83332.12.peg.877","Rv0785",null,"Fumarate/succinate/L-aspartate dehydrogenases","hypothetical protein Rv0784","hypothetical protein","frameshift_variantHIGH"]
["G01491","NC_000962",880562,"G","T","4451.21","141.0","0.99","Nonsyn","tgc","tTc","1202G>T","Cys401Phe",null,"fig|83332.12.peg.877","Rv0785",null,"Fumarate/succinate/L-aspartate dehydrogenases","hypothetical protein Rv0784","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",880562,"G","T",{"v":775179,"d":"775,179"},"25.0","1.00","Nonsyn","tgc","tTc","1202G>T","Cys401Phe",null,"fig|83332.12.peg.877","Rv0785",null,"Fumarate/succinate/L-aspartate dehydrogenases","hypothetical protein Rv0784","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",882257,"T","C","1476.05","48.0","0.98","Nonsyn","tac","Cac","568T>C","Tyr190His",null,"fig|83332.12.peg.879","Rv0787",null,"hypothetical protein","hypothetical protein","Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3)","missense_variantMODERATE"]
["MP1","NC_000962",882257,"T","C","5166.5","156.0","1.00","Nonsyn","tac","Cac","568T>C","Tyr190His",null,"fig|83332.12.peg.879","Rv0787",null,"hypothetical protein","hypothetical protein","Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3)","missense_variantMODERATE"]
[64,"NC_000962",886050,"G","A",{"v":747228,"d":"747,228"},"26.0","0.87","Synon","gcc","gcT","597C>T","Ala199Ala",null,"fig|83332.12.peg.885","Rv0792c",null,"Transcriptional regulator, GntR family","Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",886295,"G","A","3083.4","97.0","1.00","Nonsyn","cac","Tac","352C>T","His118Tyr",null,"fig|83332.12.peg.885","Rv0792c",null,"Transcriptional regulator, GntR family","Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",893733,"T","G","1717.56","62.0","0.98","Nonsyn","ctg","cGg","416T>G","Leu139Arg",null,"fig|83332.12.peg.894","Rv0800","pepC","Aspartyl aminopeptidase (EC 3.4.11.21)","Predicted dye-decolorizing peroxidase (DyP), encapsulated subgroup","Glyoxalase family protein","missense_variantMODERATE"]
["G01491","NC_000962",894888,"T","C","4502.94","150.0","1.00","Synon","agt","agC","240T>C","Ser80Ser",null,"fig|83332.12.peg.895","Rv0801",null,"Glyoxalase family protein","Aspartyl aminopeptidase (EC 3.4.11.21)","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",894888,"T","C",{"v":953703,"d":"953,703"},"47.0","0.75","Synon","agt","agC","240T>C","Ser80Ser",null,"fig|83332.12.peg.895","Rv0801",null,"Glyoxalase family protein","Aspartyl aminopeptidase (EC 3.4.11.21)","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",898492,"G","A","3216.33","98.0","0.98","Nonsyn","gcc","Acc","412G>A","Ala138Thr",null,"fig|83332.12.peg.898","Rv0804",null,"Integral membrane protein","Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)","3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)","missense_variantMODERATE"]
["G01222","NC_000962",900221,"T","C","791.74","25.0","1.00","Synon","gta","gtG","1110A>G","Val370Val",null,"fig|83332.12.peg.900","Rv0806c","cpsY","probable UDP-glucose-4-epimerase","3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)","Uncharacterized protein MSMEG_5817","synonymous_variantMODERATE"]
["MP2","NC_000962",900221,"T","C","7761.96","233.0","1.00","Synon","gta","gtG","1110A>G","Val370Val",null,"fig|83332.12.peg.900","Rv0806c","cpsY","probable UDP-glucose-4-epimerase","3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)","Uncharacterized protein MSMEG_5817","synonymous_variantMODERATE"]
[58,"NC_000962",903550,"T","C","1685.31","56.0","0.98","Synon","gct","gcC","1440T>C","Ala480Ala",null,"fig|83332.12.peg.902","Rv0808","purF","Amidophosphoribosyltransferase (EC 2.4.2.14)","Uncharacterized protein MSMEG_5817","Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)","synonymous_variantLOW"]
[7011,"NC_000962",903913,"T","C","1552.95","52.0","1.00","Synon","ggt","ggC","189T>C","Gly63Gly",null,"fig|83332.12.peg.903","Rv0809","purM","Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)","Amidophosphoribosyltransferase (EC 2.4.2.14)","Uncharacterized protein SCO4088","synonymous_variantLOW"]
["G01492","NC_000962",906857,"A","G","11792.9","376.0","1.00","Nonsyn","ata","atG","435A>G","Ile145Met",null,"fig|83332.12.peg.906","Rv0812",null,"Aminodeoxychorismate lyase (EC 4.1.3.38)","tRNA-modifying protein YgfZ","DUF1794","missense_variantLOW"]
["G01222","NC_000962",910002,"G","A",{"v":617902,"d":"617,902"},"19.0","1.00","Nonsyn","aca","aTa","32C>T","Thr11Ile",null,"fig|83332.12.peg.911","Rv0816c","thiX","Thioredoxin","Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",910002,"G","A","7176.03","214.0","1.00","Nonsyn","aca","aTa","32C>T","Thr11Ile",null,"fig|83332.12.peg.911","Rv0816c","thiX","Thioredoxin","Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",911261,"T","C","1485.83","45.0","1.00","Nonsyn","ctc","cCc","290T>C","Leu97Pro",null,"fig|83332.12.peg.913","Rv0818",null,"Nitrogen metabolism regulator GlnR, OmpR family","hypothetical protein","Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD (EC 2.3.1.189)","missense_variantMODERATE"]
["MP2","NC_000962",911261,"T","C","5861.46","175.0","1.00","Nonsyn","ctc","cCc","290T>C","Leu97Pro",null,"fig|83332.12.peg.913","Rv0818",null,"Nitrogen metabolism regulator GlnR, OmpR family","hypothetical protein","Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD (EC 2.3.1.189)","missense_variantMODERATE"]
[58,"NC_000962",913274,"C","G","6751.14","207.0","0.99","Synon","tcc","tcG","549C>G","Ser183Ser",null,"fig|83332.12.peg.915","Rv0820","phoT","Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1)","Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD (EC 2.3.1.189)","Phosphate transport system regulatory protein PhoU","synonymous_variantLOW"]
[7011,"NC_000962",916046,"T","G","2173.27","71.0","0.99",{"$nulls":10},"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1","tRNA-dihydrouridine synthase DusB","intergenic_regionMODIFIER"]
[7739,"NC_000962",916714,"G","T","2925.79","94.0","1.00","Synon","ctc","ctA","933C>A","Leu311Leu",null,"fig|83332.12.peg.918","Rv0823c",null,"tRNA-dihydrouridine synthase DusB","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1","Fatty acid desaturase occurring in virulence cluster","synonymous_variantLOW"]
["G01491","NC_000962",917259,"C","A","4596.09","144.0","0.99","Nonsyn","ggc","Tgc","388G>T","Gly130Cys",null,"fig|83332.12.peg.918","Rv0823c",null,"tRNA-dihydrouridine synthase DusB","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1","Fatty acid desaturase occurring in virulence cluster","missense_variantMODERATE"]
[54,"NC_000962",917259,"C","A","2396.56","90.0","0.89","Nonsyn","ggc","Tgc","388G>T","Gly130Cys",null,"fig|83332.12.peg.918","Rv0823c",null,"tRNA-dihydrouridine synthase DusB","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1","Fatty acid desaturase occurring in virulence cluster","missense_variantMODERATE"]
["MP2","NC_000962",921813,"C","G","6381.73","192.0","0.98","Nonsyn","gca","gGa","239C>G","Ala80Gly",null,"fig|83332.12.peg.924","Rv0829",null,"Mobile element protein","Guanine deaminase (EC 3.5.4.3)","O-methyltransferase","missense_variantLOW"]
[58,"NC_000962",931123,"T","C","5597.58","175.0","0.97","Synon","tat","taC","171T>C","Tyr57Tyr",null,"fig|83332.12.peg.932","Rv0835","lpqQ","Lipoprotein LpqQ","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",931123,"T","C","5434.84","176.0","0.95","Synon","tat","taC","171T>C","Tyr57Tyr",null,"fig|83332.12.peg.932","Rv0835","lpqQ","Lipoprotein LpqQ","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",932252,"C","A","2739.74","97.0","0.96",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionHIGH"]
["G01498","NC_000962",933699,"G","T","3079.66","104.0","0.98","Synon","ggc","ggA","333C>A","Gly111Gly",null,"fig|83332.12.peg.935","Rv0837c",null,"hypothetical protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",934230,"C","G","5214.82","159.0","0.99",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",934230,"C","G","1268.11","42.0","0.98",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",934611,"G","T","7665.74","233.0","0.98","Nonsyn","cac","caA","102C>A","His34Gln",null,"fig|83332.12.peg.937",null,null,"hypothetical protein","hypothetical protein","D-alanyl-D-alanine dipeptidase (EC 3.4.13.22)","missense_variantMODERATE"]
["G01491","NC_000962",935503,"T","G","4904.25","154.0","0.97",{"$nulls":10},"D-alanyl-D-alanine dipeptidase (EC 3.4.13.22)","SAM-dependent methyltransferase","intergenic_regionMODIFIER"]
[7739,"NC_000962",938246,"A","G","3271.26","100.0","1.00","Synon","cta","ctG","171A>G","Leu57Leu",null,"fig|83332.12.peg.942","Rv0842",null,"Uncharacterized MFS-type transporter","Uncharacterized MFS-type transporter","Acetoin dehydrogenase E1 component alpha-subunit (EC 2.3.1.190)","synonymous_variantMODERATE"]
[58,"NC_000962",938246,"A","G","1912.62","59.0","0.98","Synon","cta","ctG","171A>G","Leu57Leu",null,"fig|83332.12.peg.942","Rv0842",null,"Uncharacterized MFS-type transporter","Uncharacterized MFS-type transporter","Acetoin dehydrogenase E1 component alpha-subunit (EC 2.3.1.190)","synonymous_variantLOW"]
[7011,"NC_000962",941845,"C","A","3111.54","110.0","0.98","Nonsyn","gcg","gAg","656C>A","Ala219Glu",null,"fig|83332.12.peg.945","Rv0845",null,"Two-component system sensor histidine kinase","Two-component transcriptional response regulator, LuxR family","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",942276,"G","T","7840.9","251.0","0.99","Nonsyn","gaa","Taa","1087G>T","Glu363*",null,"fig|83332.12.peg.945","Rv0845",null,"Two-component system sensor histidine kinase","Two-component transcriptional response regulator, LuxR family","hypothetical protein","stop_gainedMODIFIER"]
["G01222","NC_000962",944725,"C","T",{"v":804132,"d":"804,132"},"30.0","0.97","Nonsyn","gct","gTt","407C>T","Ala136Val",null,"fig|83332.12.peg.948","Rv0847","lpqS","Lipoprotein LpqS","Multicopper oxidase","Pyridoxal-5'-phosphate-dependent enzyme beta superfamily (fold type II)","missense_variantMODIFIER"]
["MP1","NC_000962",944725,"C","T","4471.35","131.0","1.00","Nonsyn","gct","gTt","407C>T","Ala136Val",null,"fig|83332.12.peg.948","Rv0847","lpqS","Lipoprotein LpqS","Multicopper oxidase","Pyridoxal-5'-phosphate-dependent enzyme beta superfamily (fold type II)","missense_variantMODERATE"]
[64,"NC_000962",945214,"G","A","1558.14","49.0","1.00",{"$nulls":10},"Lipoprotein LpqS","Pyridoxal-5'-phosphate-dependent enzyme beta superfamily (fold type II)","intergenic_regionMODIFIER"]
[7739,"NC_000962",947479,"T","G","3123.29","98.0","0.99","Nonsyn","aat","aaG","183T>G","Asn61Lys",null,"fig|83332.12.peg.951","Rv0850",null,"Transposase","Uncharacterized MFS-type transporter","Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)","missense_variantMODERATE"]
["G01498","NC_000962",948294,"T","C","1651.03","55.0","0.95","Nonsyn","agc","Ggc","175A>G","Ser59Gly",null,"fig|83332.12.peg.952","Rv0851c",null,"Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)","Transposase","Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD16","missense_variantMODERATE"]
[7011,"NC_000962",948294,"T","C","3584.78","111.0","1.00","Nonsyn","agc","Ggc","175A>G","Ser59Gly",null,"fig|83332.12.peg.952","Rv0851c",null,"Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)","Transposase","Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD16","missense_variantMODERATE"]
["G01491","NC_000962",949535,"T","C","5729.1","184.0","1.00","Synon","gca","gcG","1584A>G","Ala528Ala",null,"fig|83332.12.peg.954","Rv0853c","pdc","Pyruvate decarboxylase (EC 4.1.1.1)","Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD16","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",951142,"C","A","4653.95","147.0","1.00",{"$nulls":10},"Pyruvate decarboxylase (EC 4.1.1.1)","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",951142,"C","A","4670.49","151.0","0.99",{"$nulls":10},"Pyruvate decarboxylase (EC 4.1.1.1)","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",952810,"CTT","CT","6025.42","187.0","0.96","Deletion",{"$nulls":9},"Alpha-methylacyl-CoA racemase (EC 5.1.99.4)","hypothetical protein","intergenic_regionMODIFIER"]
[58,"NC_000962",955524,"A","G","1441.06","46.0","1.00","Nonsyn","agc","Ggc","466A>G","Ser156Gly",null,"fig|83332.12.peg.960","Rv0859","fadA","3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)","Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase","Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)","missense_variantMODERATE"]
[7011,"NC_000962",957117,"T","C","2235.13","80.0","0.99","Synon","gat","gaC","825T>C","AsMP275Asp",null,"fig|83332.12.peg.961","Rv0860","fadB","Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)","3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)","DNA repair helicase","synonymous_variantLOW"]
["G01492","NC_000962",960367,"A","G","11044.4","355.0","0.99","Nonsyn","ttg","tCg","2246T>C","Leu749Ser",null,"fig|83332.12.peg.963","Rv0862c",null,"Putative DNA-binding protein","DNA repair helicase","Uncharacterized protein MSMEG_5704","missense_variantMODERATE"]
["G01498","NC_000962",960367,"A","G","2232.83","75.0","1.00","Nonsyn","ttg","tCg","2246T>C","Leu749Ser",null,"fig|83332.12.peg.963","Rv0862c",null,"Putative DNA-binding protein","DNA repair helicase","Uncharacterized protein MSMEG_5704","missense_variantMODERATE"]
["G01491","NC_000962",965637,"G","A","5528.7","177.0","0.99",{"$nulls":10},"Resuscitation-promoting factor RpfA","Molybdopterin synthase sulfur carrier subunit","intergenic_regionMODERATE"]
[54,"NC_000962",965637,"G","A",{"v":846771,"d":"846,771"},"25.0","1.00",{"$nulls":10},"Resuscitation-promoting factor RpfA","Molybdopterin synthase sulfur carrier subunit","intergenic_regionMODERATE"]
["MP2","NC_000962",979704,"G","C","5943.79","179.0","1.00","Nonsyn","ggc","Cgc","343G>C","Gly115Arg",null,"fig|83332.12.peg.983","Rv0881",null,"tRNA/rRNA methyltransferase","Transcriptional regulator, MarR family ","Putative transmembrane protein","missense_variantMODERATE"]
[58,"NC_000962",980058,"C","G",{"v":339933,"d":"339,933"},"12.0","1.00","Nonsyn","ctg","Gtg","697C>G","Leu233Val",null,"fig|83332.12.peg.983","Rv0881",null,"tRNA/rRNA methyltransferase","Transcriptional regulator, MarR family ","Putative transmembrane protein","missense_variantMODERATE"]
[7739,"NC_000962",980671,"T","C","2589.0","85.0","0.98","Synon","cta","ctG","597A>G","Leu199Leu",null,"fig|83332.12.peg.985","Rv0883c",null,"hypothetical protein","Putative transmembrane protein","Phosphoserine aminotransferase (EC 2.6.1.52)","synonymous_variantLOW"]
["G01498","NC_000962",986463,"G","C","2205.28","71.0","1.00",{"$nulls":10},"Glyoxalase/bleomycin resistance protein/dioxygenase","hypothetical protein","intergenic_regionMODERATE"]
["G01491","NC_000962",990001,"G","C","5443.28","171.0","0.99","Nonsyn","ccc","Gcc","2566C>G","Pro856Ala",null,"fig|83332.12.peg.993","Rv0890c",null,"Cyclase homology domain / Predicted ATPase / Transcriptional regulator, LuxR family","Citrate synthase (si) (EC 2.3.3.1)","Adenylyl cyclase class-3/4/guanylyl cyclase","missense_variantMODERATE"]
["G01492","NC_000962",990001,"G","C","10586.2","345.0","0.99","Nonsyn","ccc","Gcc","2566C>G","Pro856Ala",null,"fig|83332.12.peg.993","Rv0890c",null,"Cyclase homology domain / Predicted ATPase / Transcriptional regulator, LuxR family","Citrate synthase (si) (EC 2.3.3.1)","Adenylyl cyclase class-3/4/guanylyl cyclase","missense_variantMODERATE"]
["G01222","NC_000962",993346,"A","C","1105.29","35.0","1.00",{"$nulls":10},"Adenylyl cyclase class-3/4/guanylyl cyclase","Cyclohexanone monooxygenase (EC 1.14.13.22)","intergenic_regionMODIFIER"]
["MP1","NC_000962",993346,"A","C","10116.7","295.0","1.00",{"$nulls":10},"Adenylyl cyclase class-3/4/guanylyl cyclase","Cyclohexanone monooxygenase (EC 1.14.13.22)","intergenic_regionMODIFIER"]
[64,"NC_000962",996982,"A","G","4633.38","142.0","0.96","Synon","gca","gcG","459A>G","Ala153Ala",null,"fig|83332.12.peg.997","Rv0894",null,"Disease resistance domain-containing protein","O-methyltransferase","Diacyglycerol O-acyltransferase (EC 2.3.1.20)","synonymous_variantLOW"]
[7739,"NC_000962",1000732,"A","G","2332.95","78.0","1.00","Nonsyn","acg","Gcg","1261A>G","Thr421Ala",null,"fig|83332.12.peg.999","Rv0896","gltA","Citrate synthase (si) (EC 2.3.3.1)","Diacyglycerol O-acyltransferase (EC 2.3.1.20)","Beta-carotene ketolase","missense_variantMODERATE"]
["G01498","NC_000962",1009957,"G","A","2143.29","83.0","0.95","Synon","ctg","ctA","1014G>A","Leu338Leu",null,"fig|83332.12.peg.1009","Rv0906",null,"Outer membrane protein romA","Enoyl-CoA hydratase (EC 4.2.1.17)","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",1010204,"CGG","CGGG","5177.89","169.0","0.95","Insertion","acggtt","aCGGGtt","161_162insG","Val54_Ala55fs","yes","fig|83332.12.peg.1010",null,null,"hypothetical protein","Outer membrane protein romA","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily / DUF3471 domain","frameshift_variantHIGH"]
["G01222","NC_000962",1012232,"A","G","471.37","17.0","1.00","Nonsyn","atg","Gtg","502A>G","Met168Val",null,"fig|83332.12.peg.1012","Rv0908","ctpE","Cation-transporting ATPase, E1-E2 family","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily / DUF3471 domain","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",1012232,"A","G","3242.93","103.0","1.00","Nonsyn","atg","Gtg","502A>G","Met168Val",null,"fig|83332.12.peg.1012","Rv0908","ctpE","Cation-transporting ATPase, E1-E2 family","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily / DUF3471 domain","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",1012232,"A","G",{"v":589191,"d":"589,191"},"18.0","1.00","Nonsyn","atg","Gtg","502A>G","Met168Val",null,"fig|83332.12.peg.1012","Rv0908","ctpE","Cation-transporting ATPase, E1-E2 family","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily / DUF3471 domain","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",1012339,"G","A","7453.62","223.0","1.00","Synon","ctg","ctA","609G>A","Leu203Leu",null,"fig|83332.12.peg.1012","Rv0908","ctpE","Cation-transporting ATPase, E1-E2 family","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily / DUF3471 domain","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",1014815,"T","G","7332.38","230.0","0.98","Nonsyn","cat","caG","135T>G","His45Gln",null,"fig|83332.12.peg.1014","Rv0909",null,"Uncharacterized protein MSMEG_5635","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",1016901,"G","A","3754.39","118.0","1.00","Synon","tgc","tgT","150C>T","Cys50Cys",null,"fig|83332.12.peg.1018",null,null,"hypothetical protein","putative membrane protein","Lignostilbene-alpha,beta-dioxygenase and related enzymes","synonymous_variantLOW"]
["G01492","NC_000962",1018359,"C","T","10499.9","332.0","0.99","Nonsyn","gaa","Aaa","367G>A","Glu123Lys",null,"fig|83332.12.peg.1019","Rv0913c",null,"Lignostilbene-alpha,beta-dioxygenase and related enzymes","hypothetical protein","3-ketoacyl-CoA thiolase (EC 2.3.1.16)","missense_variantMODERATE"]
["G01222","NC_000962",1024346,"A","G",{"v":415335,"d":"415,335"},"17.0","1.00",{"$nulls":10},"hypothetical protein","FIG032766: hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",1024346,"A","G","8051.17","239.0","1.00",{"$nulls":10},"hypothetical protein","FIG032766: hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",1024346,"A","G","1882.35","64.0","1.00",{"$nulls":10},"hypothetical protein","FIG032766: hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",1025106,"T","C","7620.13","223.0","1.00","Synon","ttt","ttC","423T>C","Phe141Phe",null,"fig|83332.12.peg.1026","Rv0919",null,"FIG001353: Acetyltransferase","FIG032766: hypothetical protein","hypothetical protein","synonymous_variantMODERATE"]
[64,"NC_000962",1030043,"A","G",{"v":991696,"d":"991,696"},"32.0","0.97","Nonsyn","tcc","Ccc","535T>C","Ser179Pro",null,"fig|83332.12.peg.1031","Rv0923c",null,"hypothetical protein","hypothetical protein","Manganese transport protein MntH","missense_variantMODERATE"]
[7739,"NC_000962",1031325,"G","A","3646.49","117.0","0.97","Synon","gcc","gcT","540C>T","Ala180Ala",null,"fig|83332.12.peg.1032","Rv0924c","mntH","Manganese transport protein MntH","hypothetical protein","BRAMP","synonymous_variantLOW"]
["G01498","NC_000962",1034238,"A","G","1263.36","42.0","1.00","Synon","ttg","Ctg","394T>C","Leu132Leu",null,"fig|83332.12.peg.1035","Rv0927c",null,"Oxidoreductase, short-chain dehydrogenase/reductase family","Oxidoreductase","Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1)","synonymous_variantLOW"]
["G01491","NC_000962",1037012,"T","C","4779.49","148.0","1.00","Nonsyn","atg","aCg","14T>C","Met5Thr",null,"fig|83332.12.peg.1038","Rv0930","pstA1","Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1)","Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1)","Serine/threonine-protein kinase PknD (EC 2.7.11.1)","missense_variantMODERATE"]
[54,"NC_000962",1037012,"T","C","4402.03","137.0","0.99","Nonsyn","atg","aCg","14T>C","Met5Thr",null,"fig|83332.12.peg.1038","Rv0930","pstA1","Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1)","Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1)","Serine/threonine-protein kinase PknD (EC 2.7.11.1)","missense_variantMODERATE"]
["MP2","NC_000962",1037911,"C","T","8166.93","243.0","0.99","Nonsyn","cga","Tga","913C>T","Arg305*",null,"fig|83332.12.peg.1038","Rv0930","pstA1","Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1)","Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1)","Serine/threonine-protein kinase PknD (EC 2.7.11.1)","stop_gainedLOW"]
["MP1","NC_000962",1037911,"C","T","7242.06","216.0","0.99","Nonsyn","cga","Tga","913C>T","Arg305*",null,"fig|83332.12.peg.1038","Rv0930","pstA1","Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1)","Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1)","Serine/threonine-protein kinase PknD (EC 2.7.11.1)","stop_gainedLOW"]
[64,"NC_000962",1040639,"TA","GG",{"v":371885,"d":"371,885"},"10.0","0.91","Nonsyn","tac","CCc","409TA>CC","Tyr137Pro",null,"fig|83332.12.peg.1040","Rv0932c","pstS2","Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1)","Serine/threonine-protein kinase PknD (EC 2.7.11.1)","Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1)","missense_variantMODERATE"]
[7739,"NC_000962",1043169,"T","C","2519.65","87.0","0.99","Nonsyn","gtt","gCt","1055T>C","Val352Ala",null,"fig|83332.12.peg.1042","Rv0934","pstS1","Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1)","Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1)","Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1)","missense_variantMODERATE"]
["G01498","NC_000962",1046908,"C","T","2122.82","75.0","0.96","Nonsyn","gcg","gTg","773C>T","Ala258Val",null,"fig|83332.12.peg.1046","Rv0938",null,"ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD","Ku domain protein","Fumarylacetoacetate hydrolase family protein / MBL-fold metallo-hydrolase superfamily","missense_variantLOW"]
["G01491","NC_000962",1047165,"T","C","2803.28","89.0","1.00","Nonsyn","tgc","Cgc","1030T>C","Cys344Arg",null,"fig|83332.12.peg.1046","Rv0938",null,"ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD","Ku domain protein","Fumarylacetoacetate hydrolase family protein / MBL-fold metallo-hydrolase superfamily","missense_variantMODERATE"]
["G01491","NC_000962",1051633,"C","T","3510.66","117.0","0.94","Nonsyn","gtt","Att","676G>A","Val226Ile",null,"fig|83332.12.peg.1049","Rv0941c",null,"hypothetical protein","Hydride transferase 1 (Fragment)","hypothetical protein","missense_variantLOW"]
["MP1","NC_000962",1051633,"C","T","7455.06","221.0","0.99","Nonsyn","gtt","Att","676G>A","Val226Ile",null,"fig|83332.12.peg.1049","Rv0941c",null,"hypothetical protein","Hydride transferase 1 (Fragment)","hypothetical protein","missense_variantLOW"]
[64,"NC_000962",1054136,"C","T",{"v":437192,"d":"437,192"},"16.0","0.94","Synon","acc","acT","378C>T","Thr126Thr",null,"fig|83332.12.peg.1052","Rv0944",null,"Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)","Cyclohexanone monooxygenase (EC 1.14.13.22)","Short chain dehydrogenase family protein Rv0945","synonymous_variantMODERATE"]
["MP2","NC_000962",1054136,"C","T","7291.26","216.0","1.00","Synon","acc","acT","378C>T","Thr126Thr",null,"fig|83332.12.peg.1052","Rv0944",null,"Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)","Cyclohexanone monooxygenase (EC 1.14.13.22)","Short chain dehydrogenase family protein Rv0945","synonymous_variantMODIFIER"]
[58,"NC_000962",1062745,"T","C","3897.06","120.0","1.00","Nonsyn","gtg","gCg","782T>C","Val261Ala",null,"fig|83332.12.peg.1060","Rv0951","sucC","Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)","Phage peptidoglycan binding endopeptidase","Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)","missense_variantMODERATE"]
[7011,"NC_000962",1063765,"G","A","3468.56","104.0","1.00","Nonsyn","agg","aAg","626G>A","Arg209Lys",null,"fig|83332.12.peg.1061","Rv0952","sucD","Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)","Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)","N5,N10-methylenetetrahydromethanopterin reductase-related protein, MSMEG5498 family","missense_variantMODERATE"]
["G01492","NC_000962",1068151,"T","C","14303.6","460.0","0.99","Synon","cat","caC","519T>C","His173His",null,"fig|83332.12.peg.1066","Rv0956","purN","Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)","FIG021574: Possible membrane protein related to de Novo purine biosynthesis","IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)","synonymous_variantLOW"]
["G01222","NC_000962",1068432,"A","G","1001.86","32.0","1.00","Synon","cca","ccG","228A>G","Pro76Pro",null,"fig|83332.12.peg.1067","Rv0957","purH","IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)","Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)","Magnesium chelatase, subunit ChlI (EC 6.6.1.1)","synonymous_variantMODERATE"]
["MP1","NC_000962",1068432,"A","G","5638.85","166.0","1.00","Synon","cca","ccG","228A>G","Pro76Pro",null,"fig|83332.12.peg.1067","Rv0957","purH","IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)","Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)","Magnesium chelatase, subunit ChlI (EC 6.6.1.1)","synonymous_variantMODERATE"]
[64,"NC_000962",1074558,"G","A","1614.56","51.0","0.96","Nonsyn","ccc","cTc","557C>T","Pro186Leu",null,"fig|83332.12.peg.1073","Rv0962c","lprP","Lipoprotein LprP","Integral membrane protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",1075279,"T","C","3050.62","91.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",1076309,"G","T","4953.39","156.0","0.99","Nonsyn","cct","Act","370C>A","Pro124Thr",null,"fig|83332.12.peg.1076","Rv0964c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",1076309,"G","T","2654.21","90.0","1.00","Nonsyn","cct","Act","370C>A","Pro124Thr",null,"fig|83332.12.peg.1076","Rv0964c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",1077280,"A","C","1784.33","57.0","1.00","Nonsyn","tgg","Ggg","556T>G","TrMP186Gly",null,"fig|83332.12.peg.1078","Rv0966c",null,"hypothetical protein","hypothetical protein","Repressor CsoR of the copZA operon","missense_variantMODERATE"]
["G01491","NC_000962",1077312,"A","G","3773.15","121.0","0.98","Nonsyn","gtg","gCg","524T>C","Val175Ala",null,"fig|83332.12.peg.1078","Rv0966c",null,"hypothetical protein","hypothetical protein","Repressor CsoR of the copZA operon","missense_variantMODERATE"]
[54,"NC_000962",1077312,"A","G","399.11","15.0","1.00","Nonsyn","gtg","gCg","524T>C","Val175Ala",null,"fig|83332.12.peg.1078","Rv0966c",null,"hypothetical protein","hypothetical protein","Repressor CsoR of the copZA operon","missense_variantMODERATE"]
["MP2","NC_000962",1078209,"A","T","6505.64","190.0","1.00","Nonsyn","atc","Ttc","235A>T","Ile79Phe",null,"fig|83332.12.peg.1079","Rv0967",null,"Repressor CsoR of the copZA operon","hypothetical protein","hypothetical protein","missense_variantLOW"]
[58,"NC_000962",1079927,"C","A",{"v":918591,"d":"918,591"},"30.0","1.00","Synon","acc","acA","1251C>A","Thr417Thr",null,"fig|83332.12.peg.1081","Rv0969","ctpV","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","hypothetical protein","Integral membrane protein","synonymous_variantLOW"]
[7011,"NC_000962",1080192,"G","A","2229.99","74.0","1.00","Nonsyn","gat","Aat","1516G>A","Asp506Asn",null,"fig|83332.12.peg.1081","Rv0969","ctpV","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","hypothetical protein","Integral membrane protein","missense_variantMODERATE"]
[7739,"NC_000962",1080192,"G","A","2451.29","81.0","1.00","Nonsyn","gat","Aat","1516G>A","Asp506Asn",null,"fig|83332.12.peg.1081","Rv0969","ctpV","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","hypothetical protein","Integral membrane protein","missense_variantMODERATE"]
["G01498","NC_000962",1081681,"T","C","2667.67","85.0","1.00","Synon","gtt","gtC","630T>C","Val210Val",null,"fig|83332.12.peg.1082","Rv0970",null,"Integral membrane protein","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Isohexenylglutaconyl-CoA hydratase (EC 4.2.1.57)","synonymous_variantMODERATE"]
["G01491","NC_000962",1087193,"G","C","5846.61","186.0","0.99","Nonsyn","aac","aaG","159C>G","Asn53Lys",null,"fig|83332.12.peg.1086","Rv0974c","accD2","Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5)","Geranyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.5)","Citronellyl-CoA dehydrogenase @ Acyl-CoA dehydrogenase (EC 1.3.8.-), Mycobacterial subgroup FadE13","missense_variantMODERATE"]
["MP2","NC_000962",1087193,"G","C","7106.13","207.0","1.00","Nonsyn","aac","aaG","159C>G","Asn53Lys",null,"fig|83332.12.peg.1086","Rv0974c","accD2","Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5)","Geranyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.5)","Citronellyl-CoA dehydrogenase @ Acyl-CoA dehydrogenase (EC 1.3.8.-), Mycobacterial subgroup FadE13","missense_variantMODERATE"]
["MP1","NC_000962",1090188,"AGG","AGGG","4988.49","158.0","0.93","Insertion",{"$nulls":9},"Terpene utilization protein AtuA","PE_PGRS family protein ","intergenic_regionMODIFIER"]
[64,"NC_000962",1093406,"A","G",{"v":370699,"d":"370,699"},"15.0","0.94","Synon","gtt","gtC","996T>C","Val332Val",null,"fig|83332.12.peg.1090","Rv0978c","PE_PGRS17","PE_PGRS family protein ","PE_PGRS family protein ","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",1093928,"G","A",{"v":280538,"d":"280,538"},"15.0","0.88","Synon","aac","aaT","474C>T","Asn158Asn",null,"fig|83332.12.peg.1090","Rv0978c","PE_PGRS17","PE_PGRS family protein ","PE_PGRS family protein ","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",1094538,"T","G","6126.19","206.0","0.98",{"$nulls":10},"PE_PGRS family protein ","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",1094538,"T","G",{"v":323828,"d":"323,828"},"19.0","1.00",{"$nulls":10},"PE_PGRS family protein ","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",1095644,"C","T","7650.83","251.0","0.98","Nonsyn","gcg","Acg","853G>A","Ala285Thr",null,"fig|83332.12.peg.1093","Rv0980c","PE_PGRS18","PE_PGRS family protein ","LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-independent","Mycobacterial persistence response regulator MprA","missense_variantMODERATE"]
["G01222","NC_000962",1096399,"G","A","768.8","28.0","0.97","Nonsyn","gcg","gTg","98C>T","Ala33Val",null,"fig|83332.12.peg.1093","Rv0980c","PE_PGRS18","PE_PGRS family protein ","LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-independent","Mycobacterial persistence response regulator MprA","missense_variantMODIFIER"]
["MP1","NC_000962",1096399,"G","A","5685.89","201.0","0.97","Nonsyn","gcg","gTg","98C>T","Ala33Val",null,"fig|83332.12.peg.1093","Rv0980c","PE_PGRS18","PE_PGRS family protein ","LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-independent","Mycobacterial persistence response regulator MprA","missense_variantMODIFIER"]
[64,"NC_000962",1097023,"G","A",{"v":957127,"d":"957,127"},"48.0","0.73","Nonsyn","ggc","Agc","202G>A","Gly68Ser",null,"fig|83332.12.peg.1094","Rv0981","mprA","Mycobacterial persistence response regulator MprA","PE_PGRS family protein ","Two component system sensor histidine kinase MprB","missense_variantMODERATE"]
[7739,"NC_000962",1098523,"T","A","3230.49","105.0","0.99","Nonsyn","ctt","cAt","944T>A","Leu315His",null,"fig|83332.12.peg.1095","Rv0982","mprB","Two component system sensor histidine kinase MprB","Mycobacterial persistence response regulator MprA","Probable secreted or membrane serine protease Rv0983","missense_variantMODERATE"]
["G01492","NC_000962",1100234,"T","C","10211.7","329.0","1.00","Nonsyn","ctg","cCg","869T>C","Leu290Pro",null,"fig|83332.12.peg.1096","Rv0983","pepD","Probable secreted or membrane serine protease Rv0983","Two component system sensor histidine kinase MprB","Molybdopterin adenylyltransferase (EC 2.7.7.75)","missense_variantLOW"]
["G01492","NC_000962",1101375,"C","G","5866.24","204.0","0.91","Nonsyn","gac","Cac","106G>C","AsG01222His",null,"fig|83332.12.peg.1098","Rv0985c","mscL","Large-conductance mechanosensitive channel","Molybdopterin adenylyltransferase (EC 2.7.7.75)","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",1101375,"C","G","1963.92","67.0","0.96","Nonsyn","gac","Cac","106G>C","AsG01222His",null,"fig|83332.12.peg.1098","Rv0985c","mscL","Large-conductance mechanosensitive channel","Molybdopterin adenylyltransferase (EC 2.7.7.75)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",1102484,"G","T","2305.59","72.0","0.99","Nonsyn","gtg","Ttg","682G>T","Val228Leu",null,"fig|83332.12.peg.1100","Rv0986",null,"AttE component of AttEFGH ABC transport system","hypothetical protein","AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system","missense_variantMODERATE"]
[54,"NC_000962",1102484,"G","T","5572.67","178.0","1.00","Nonsyn","gtg","Ttg","682G>T","Val228Leu",null,"fig|83332.12.peg.1100","Rv0986",null,"AttE component of AttEFGH ABC transport system","hypothetical protein","AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system","missense_variantMODERATE"]
["MP2","NC_000962",1104690,"T","G","8767.27","255.0","1.00","Nonsyn","ttc","Gtc","2149T>G","Phe717Val",null,"fig|83332.12.peg.1101","Rv0987",null,"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system","AttE component of AttEFGH ABC transport system","AttH component of AttEFGH ABC transport system","missense_variantMODERATE"]
[58,"NC_000962",1105284,"G","A","5123.86","159.0","0.99","Nonsyn","gtt","Att","169G>A","Val57Ile",null,"fig|83332.12.peg.1102","Rv0988",null,"AttH component of AttEFGH ABC transport system","AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system","Solanesyl diphosphate synthase (EC 2.5.1.11)","missense_variantMODERATE"]
[7011,"NC_000962",1106345,"C","T","3672.56","112.0","1.00",{"$nulls":10},"AttH component of AttEFGH ABC transport system","Solanesyl diphosphate synthase (EC 2.5.1.11)","intergenic_regionMODIFIER"]
["G01492","NC_000962",1106422,"T","C","10159.2","326.0","1.00","Nonsyn","ata","Gta","961A>G","Ile321Val",null,"fig|83332.12.peg.1103","Rv0989c","grcC2","Solanesyl diphosphate synthase (EC 2.5.1.11)","AttH component of AttEFGH ABC transport system","Heat shock protein 22.5 (HsMP22.5)","missense_variantMODERATE"]
["G01222","NC_000962",1107940,"A","C",{"v":781169,"d":"781,169"},"27.0","1.00","Nonsyn","tcc","Gcc","160T>G","Ser54Ala",null,"fig|83332.12.peg.1104","Rv0990c",null,"Heat shock protein 22.5 (HsMP22.5)","Solanesyl diphosphate synthase (EC 2.5.1.11)","Putative regulatory protein, FmdB family","missense_variantMODERATE"]
["G01491","NC_000962",1107940,"A","C","5656.51","178.0","0.99","Nonsyn","tcc","Gcc","160T>G","Ser54Ala",null,"fig|83332.12.peg.1104","Rv0990c",null,"Heat shock protein 22.5 (HsMP22.5)","Solanesyl diphosphate synthase (EC 2.5.1.11)","Putative regulatory protein, FmdB family","missense_variantMODERATE"]
["MP1","NC_000962",1107940,"A","C","4836.35","147.0","1.00","Nonsyn","tcc","Gcc","160T>G","Ser54Ala",null,"fig|83332.12.peg.1104","Rv0990c",null,"Heat shock protein 22.5 (HsMP22.5)","Solanesyl diphosphate synthase (EC 2.5.1.11)","Putative regulatory protein, FmdB family","missense_variantMODERATE"]
["MP1","NC_000962",1109163,"C","G","5934.44","179.0","1.00","Nonsyn","atg","atC","141G>C","Met47Ile",null,"fig|83332.12.peg.1106","Rv0992c",null,"5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)","Putative regulatory protein, FmdB family","UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)","missense_variantMODERATE"]
[64,"NC_000962",1109975,"A","G",{"v":499377,"d":"499,377"},"16.0","0.94","Nonsyn","cag","cGg","704A>G","Gln235Arg",null,"fig|83332.12.peg.1107","Rv0993","galU","UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)","5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)","Molybdopterin molybdenumtransferase (EC 2.10.1.1)","missense_variantMODERATE"]
[7739,"NC_000962",1110956,"T","G","1372.34","55.0","0.98","Nonsyn","tgt","Ggt","679T>G","Cys227Gly",null,"fig|83332.12.peg.1108","Rv0994","moeA1","Molybdopterin molybdenumtransferase (EC 2.10.1.1)","UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)","Ribosomal-protein-S5p-alanine acetyltransferase (EC 2.3.1.128)","missense_variantMODERATE"]
["G01498","NC_000962",1113290,"G","C","1999.32","64.0","1.00","Nonsyn","gag","Cag","907G>C","Glu303Gln",null,"fig|83332.12.peg.1110","Rv0996",null,"FIG037137: Putative conserved transmembrane protein","Ribosomal-protein-S5p-alanine acetyltransferase (EC 2.3.1.128)","tRNA-Ala-CGC","missense_variantMODERATE"]
["G01491","NC_000962",1115540,"G","A","3486.12","123.0","0.91","Nonsyn","ggc","Agc","742G>A","Gly248Ser",null,"fig|83332.12.peg.1113","Rv0998",null,"Protein lysine acetyltransferase Pat (EC 2.3.1.-), Mycobacterial type","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",1115540,"G","A",{"v":348589,"d":"348,589"},"12.0","1.00","Nonsyn","ggc","Agc","742G>A","Gly248Ser",null,"fig|83332.12.peg.1113","Rv0998",null,"Protein lysine acetyltransferase Pat (EC 2.3.1.-), Mycobacterial type","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",1118314,"C","T",{"v":542952,"d":"542,952"},"19.0","1.00","Nonsyn","acc","aTc","1130C>T","Thr377Ile",null,"fig|83332.12.peg.1116","Rv1001","arcA","Arginine deiminase (EC 3.5.3.6)","Alkylated DNA repair protein AlkB","Protein-O-mannosyltransferase","missense_variantMODERATE"]
["MP1","NC_000962",1118314,"C","T","6027.6","181.0","1.00","Nonsyn","acc","aTc","1130C>T","Thr377Ile",null,"fig|83332.12.peg.1116","Rv1001","arcA","Arginine deiminase (EC 3.5.3.6)","Alkylated DNA repair protein AlkB","Protein-O-mannosyltransferase","missense_variantMODERATE"]
[64,"NC_000962",1119597,"C","G","1092.63","40.0","0.83","Nonsyn","gtc","Ctc","343G>C","Val115Leu",null,"fig|83332.12.peg.1117","Rv1002c",null,"Protein-O-mannosyltransferase","Arginine deiminase (EC 3.5.3.6)","16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)","missense_variantMODERATE"]
[7739,"NC_000962",1121251,"TCC","TC",{"v":666665,"d":"666,665"},"25.0","0.93","Deletion","gggatg","gGAtg","845delG","Gly282fs","yes","fig|83332.12.peg.1119","Rv1004c",null,"elastin","16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)","Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)","frameshift_variantHIGH"]
["G01498","NC_000962",1123597,"A","G","4045.24","135.0","0.99","Nonsyn","ttg","tCg","251T>C","Leu84Ser",null,"fig|83332.12.peg.1120","Rv1005c","pabB","Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)","elastin","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",1126889,"G","C","9112.82","290.0","0.97","Nonsyn","cgc","Ggc","115C>G","Arg39Gly",null,"fig|83332.12.peg.1122","Rv1007c","metG","Methionyl-tRNA synthetase (EC 6.1.1.10)","hypothetical protein","Uncharacterized metal-dependent hydrolase YcfH","missense_variantMODERATE"]
["G01222","NC_000962",1127648,"C","A",{"v":835332,"d":"835,332"},"27.0","1.00","Nonsyn","acc","aAc","560C>A","Thr187Asn",null,"fig|83332.12.peg.1123","Rv1008","tatD","Uncharacterized metal-dependent hydrolase YcfH","Methionyl-tRNA synthetase (EC 6.1.1.10)","Resuscitation-promoting factor RpfB","missense_variantLOW"]
["MP1","NC_000962",1127648,"C","A","7437.54","218.0","0.99","Nonsyn","acc","aAc","560C>A","Thr187Asn",null,"fig|83332.12.peg.1123","Rv1008","tatD","Uncharacterized metal-dependent hydrolase YcfH","Methionyl-tRNA synthetase (EC 6.1.1.10)","Resuscitation-promoting factor RpfB","missense_variantMODERATE"]
[54,"NC_000962",1127648,"C","A","2472.55","81.0","0.99","Nonsyn","acc","aAc","560C>A","Thr187Asn",null,"fig|83332.12.peg.1123","Rv1008","tatD","Uncharacterized metal-dependent hydrolase YcfH","Methionyl-tRNA synthetase (EC 6.1.1.10)","Resuscitation-promoting factor RpfB","missense_variantMODERATE"]
["MP2","NC_000962",1128825,"C","T","5949.22","176.0","0.99","Synon","ggc","ggT","735C>T","Gly245Gly",null,"fig|83332.12.peg.1124","Rv1009","rpfB","Resuscitation-promoting factor RpfB","Uncharacterized metal-dependent hydrolase YcfH","SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)","synonymous_variantMODERATE"]
[58,"NC_000962",1131229,"CGA","CGGA",{"v":467418,"d":"467,418"},"16.0","0.94","Insertion",{"$nulls":9},"4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)","CoA ligase","intergenic_regionMODIFIER"]
[7011,"NC_000962",1131300,"G","A","3030.13","106.0","0.97",{"$nulls":10},"4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)","CoA ligase","intergenic_regionMODERATE"]
["G01492","NC_000962",1143832,"A","C","10644.8","340.0","1.00","Nonsyn","acc","Ccc","97A>C","Thr33Pro",null,"fig|83332.12.peg.1138","Rv1022","lpqU","Lipoprotein LpqU","Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)","Enolase (EC 4.2.1.11)","missense_variantMODERATE"]
["G01222","NC_000962",1144585,"A","G",{"v":779117,"d":"779,117"},"25.0","1.00","Nonsyn","agg","Ggg","22A>G","Arg8Gly",null,"fig|83332.12.peg.1139","Rv1023","eno","Enolase (EC 4.2.1.11)","Lipoprotein LpqU","Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage","missense_variantMODERATE"]
["MP1","NC_000962",1144585,"A","G","7764.7","225.0","1.00","Nonsyn","agg","Ggg","22A>G","Arg8Gly",null,"fig|83332.12.peg.1139","Rv1023","eno","Enolase (EC 4.2.1.11)","Lipoprotein LpqU","Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage","missense_variantMODERATE"]
["G01498","NC_000962",1147542,"C","T","1650.17","56.0","0.97","Nonsyn","acc","aTc","524C>T","Thr175Ile",null,"fig|83332.12.peg.1142","Rv1026",null,"Exopolyphosphatase (EC 3.6.1.11)","FIG004853: possible toxin to DivIC","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",1147542,"C","T","6007.24","178.0","1.00","Nonsyn","acc","aTc","524C>T","Thr175Ile",null,"fig|83332.12.peg.1142","Rv1026",null,"Exopolyphosphatase (EC 3.6.1.11)","FIG004853: possible toxin to DivIC","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",1148259,"A","G",{"v":471985,"d":"471,985"},"18.0","0.95",{"$nulls":10},"hypothetical protein","DNA-binding response regulator KdpE","intergenic_regionMODIFIER"]
[7739,"NC_000962",1149551,"C","T","2508.29","80.0","1.00","Synon","gag","gaA","2136G>A","Glu712Glu",null,"fig|83332.12.peg.1145","Rv1028c","kdpD","Osmosensitive K+ channel histidine kinase KdpD","DNA-binding response regulator KdpE","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",1150585,"G","A","2521.9","84.0","0.98","Nonsyn","ccc","Tcc","1102C>T","Pro368Ser",null,"fig|83332.12.peg.1145","Rv1028c","kdpD","Osmosensitive K+ channel histidine kinase KdpD","DNA-binding response regulator KdpE","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",1150803,"C","T","4838.93","159.0","1.00","Nonsyn","ggc","gAc","884G>A","Gly295Asp",null,"fig|83332.12.peg.1145","Rv1028c","kdpD","Osmosensitive K+ channel histidine kinase KdpD","DNA-binding response regulator KdpE","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",1150803,"C","T",{"v":768244,"d":"768,244"},"27.0","1.00","Nonsyn","ggc","gAc","884G>A","Gly295Asp",null,"fig|83332.12.peg.1145","Rv1028c","kdpD","Osmosensitive K+ channel histidine kinase KdpD","DNA-binding response regulator KdpE","hypothetical protein","missense_variantHIGH"]
["MP2","NC_000962",1153401,"G","T","6267.93","182.0","1.00","Nonsyn","ggt","Tgt","1390G>T","Gly464Cys",null,"fig|83332.12.peg.1147","Rv1029","kdpA","Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)","hypothetical protein","Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)","missense_variantMODERATE"]
[58,"NC_000962",1163134,"T","C","2466.94","76.0","0.99","Synon","gga","ggG","243A>G","Gly81Gly",null,"fig|83332.12.peg.1158","Rv1040c","PE8","PE family protein ","PPE family protein, SVP subgroup ","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",1163134,"T","C","1612.53","49.0","1.00","Synon","gga","ggG","243A>G","Gly81Gly",null,"fig|83332.12.peg.1158","Rv1040c","PE8","PE family protein ","PPE family protein, SVP subgroup ","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",1164336,"G","A","2720.55","87.0","1.00","Nonsyn","gcg","gTg","68C>T","Ala23Val",null,"fig|83332.12.peg.1159",null,null,"hypothetical protein","PE family protein ","Mobile element protein","missense_variantMODERATE"]
["MP2","NC_000962",1165521,"TAC","TAAC","5734.36","182.0","0.97","Insertion",{"$nulls":9},"Mobile element protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",1168515,"G","C","8922.46","286.0","0.98","Nonsyn","cag","caC","843G>C","Gln281His",null,"fig|83332.12.peg.1165","Rv1045",null,"FIG00645039: hypothetical protein with HTH-domain","Protein co-occurring with FIG00645039: hypothetical protein with HTH-domain","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",1168715,"CTT","CTTT",{"v":776529,"d":"776,529"},"26.0","0.96","Insertion","gaagcg","gAAAGcg","17_18insA","Gly6_Ser7fs","yes","fig|83332.12.peg.1167","Rv1046c",null,"hypothetical protein","FIG00645039: hypothetical protein with HTH-domain","Mobile element protein","frameshift_variantMODERATE"]
["MP1","NC_000962",1168715,"CTT","CTTT","6264.71","203.0","0.97","Insertion","gaagcg","gAAAGcg","17_18insA","Gly6_Ser7fs","yes","fig|83332.12.peg.1167","Rv1046c",null,"hypothetical protein","FIG00645039: hypothetical protein with HTH-domain","Mobile element protein","frameshift_variantMODERATE"]
[64,"NC_000962",1172834,"CTTTTTTG","CTTTTTG",{"v":586695,"d":"586,695"},"52.0","0.52","Deletion",{"$nulls":9},"Transcriptional regulator, MarR family","Short-chain dehydrogenase/reductase SDR","intergenic_regionMODIFIER"]
[7739,"NC_000962",1174782,"G","A","3517.52","112.0","0.98",{"$nulls":10},"FIG00645039: hypothetical protein with HTH-domain","hypothetical protein","intergenic_regionMODIFIER"]
[58,"NC_000962",1174782,"G","A","4985.25","154.0","0.99",{"$nulls":10},"FIG00645039: hypothetical protein with HTH-domain","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",1176753,"T","C","2613.19","86.0","1.00",{"$nulls":10},"hypothetical protein","Integrase","intergenic_regionMODIFIER"]
["G01492","NC_000962",1178116,"T","C","9958.99","319.0","0.99","Synon","act","acC","405T>C","Thr135Thr",null,"fig|83332.12.peg.1180","Rv1056",null,"hypothetical protein","tRNA-Leu-TAA","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",1180796,"A","C",{"v":879092,"d":"879,092"},"28.0","1.00","Nonsyn","cac","cCc","113A>C","His38Pro",null,"fig|83332.12.peg.1183","Rv1058","fadD14","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD14","hypothetical protein","Oxidoreductase","missense_variantMODERATE"]
["MP1","NC_000962",1180796,"A","C","7776.85","229.0","1.00","Nonsyn","cac","cCc","113A>C","His38Pro",null,"fig|83332.12.peg.1183","Rv1058","fadD14","CoA ligase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD14","hypothetical protein","Oxidoreductase","missense_variantMODERATE"]
[7011,"NC_000962",1200418,"A","G","3368.68","104.0","1.00",{"$nulls":10},"SGNH hydrolase family","Esterase/lipase Rv1076/Rv3487c","intergenic_regionMODIFIER"]
[58,"NC_000962",1200642,"C","T","3274.92","99.0","0.97","Nonsyn","ccg","cTg","50C>T","Pro17Leu",null,"fig|83332.12.peg.1202","Rv1076","lipU","Esterase/lipase Rv1076/Rv3487c","SGNH hydrolase family","Cystathionine beta-synthase (EC 4.2.1.22)","missense_variantMODERATE"]
[7011,"NC_000962",1203234,"C","T","2196.64","70.0","0.99",{"$nulls":10},"Cystathionine beta-synthase (EC 4.2.1.22)","Proline-rich antigen homolog","intergenic_regionMODIFIER"]
[7739,"NC_000962",1203234,"C","T","2304.21","72.0","1.00",{"$nulls":10},"Cystathionine beta-synthase (EC 4.2.1.22)","Proline-rich antigen homolog","intergenic_regionMODIFIER"]
["G01498","NC_000962",1203824,"T","C","3495.01","112.0","1.00","Nonsyn","atc","aCc","527T>C","Ile176Thr",null,"fig|83332.12.peg.1204","Rv1078","pra","Proline-rich antigen homolog","Cystathionine beta-synthase (EC 4.2.1.22)","Cystathionine gamma-lyase (EC 4.4.1.1)","missense_variantMODERATE"]
["G01491","NC_000962",1211369,"A","C","5961.96","183.0","1.00","Nonsyn","agc","Cgc","598A>C","Ser200Arg",null,"fig|83332.12.peg.1213","Rv1086",null,"(2E,6Z)-farnesyl diphosphate synthase (EC 2.5.1.68)","FIG01964566: Predicted membrane protein, hemolysin III homolog","PE_PGRS family protein ","missense_variantMODERATE"]
[54,"NC_000962",1211369,"A","C","1671.66","52.0","0.95","Nonsyn","agc","Cgc","598A>C","Ser200Arg",null,"fig|83332.12.peg.1213","Rv1086",null,"(2E,6Z)-farnesyl diphosphate synthase (EC 2.5.1.68)","FIG01964566: Predicted membrane protein, hemolysin III homolog","PE_PGRS family protein ","missense_variantMODERATE"]
["MP2","NC_000962",1220570,"G","T","6603.66","206.0","1.00","Synon","gcg","gcT","33G>T","Ala11Ala",null,"fig|83332.12.peg.1224","Rv1093","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","Pantothenate kinase (EC 2.7.1.33)","Acyl-[acyl-carrier protein] desaturase DesA2 (EC 1.14.19.2)","synonymous_variantLOW"]
[58,"NC_000962",1220680,"T","C","3035.02","101.0","0.95","Nonsyn","gta","gCa","143T>C","Val48Ala",null,"fig|83332.12.peg.1224","Rv1093","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","Pantothenate kinase (EC 2.7.1.33)","Acyl-[acyl-carrier protein] desaturase DesA2 (EC 1.14.19.2)","missense_variantMODERATE"]
[7011,"NC_000962",1221181,"C","G","2370.86","75.0","1.00","Nonsyn","gcg","gGg","644C>G","Ala215Gly",null,"fig|83332.12.peg.1224","Rv1093","glyA","Serine hydroxymethyltransferase (EC 2.1.2.1)","Pantothenate kinase (EC 2.7.1.33)","Acyl-[acyl-carrier protein] desaturase DesA2 (EC 1.14.19.2)","missense_variantMODERATE"]
["G01492","NC_000962",1224367,"T","C","9858.74","321.0","0.98",{"$nulls":10},"Predicted ATPase related to phosphate starvation-inducible protein PhoH","Possible glycosyl hydrolase (EC 3.-.-.-)","intergenic_regionMODIFIER"]
["MP1","NC_000962",1224367,"T","C","2644.24","82.0","1.00",{"$nulls":10},"Predicted ATPase related to phosphate starvation-inducible protein PhoH","Possible glycosyl hydrolase (EC 3.-.-.-)","intergenic_regionMODIFIER"]
["G01492","NC_000962",1225198,"C","T","10825.0","355.0","0.99","Nonsyn","ccc","Tcc","814C>T","Pro272Ser",null,"fig|83332.12.peg.1227","Rv1096",null,"Possible glycosyl hydrolase (EC 3.-.-.-)","Predicted ATPase related to phosphate starvation-inducible protein PhoH","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",1230417,"CAA","CA",{"v":896403,"d":"896,403"},"31.0","0.97","Deletion","ttg","TG","130delT","Leu44fs","yes","fig|83332.12.peg.1232","Rv1101c",null,"FIG00818075: possible membrane protein","Uncharacterized protien Rv1100","Death on curing protein, Doc toxin","frameshift_variantHIGH"]
["MP1","NC_000962",1230417,"CAA","CA","6368.03","202.0","0.96","Deletion","ttg","TG","130delT","Leu44fs","yes","fig|83332.12.peg.1232","Rv1101c",null,"FIG00818075: possible membrane protein","Uncharacterized protien Rv1100","Death on curing protein, Doc toxin","frameshift_variantHIGH"]
[64,"NC_000962",1230778,"G","A","3772.82","118.0","0.98","Nonsyn","acc","aTc","194C>T","Thr65Ile",null,"fig|83332.12.peg.1233","Rv1102c",null,"Death on curing protein, Doc toxin","FIG00818075: possible membrane protein","Prevent host death protein, Phd antitoxin","missense_variantMODERATE"]
[7739,"NC_000962",1235446,"T","C","2869.55","91.0","1.00","Synon","tca","tcG","15A>G","Ser5Ser",null,"fig|83332.12.peg.1240","Rv1108c","xseA","Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)","Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)","Uncharacterized protein Rv1109c","synonymous_variantLOW"]
["G01498","NC_000962",1238483,"G","A","1260.63","49.0","0.89","Nonsyn","gtc","Atc","229G>A","Val77Ile",null,"fig|83332.12.peg.1244","Rv1112",null,"GTP-binding and nucleic acid-binding protein YchF","Rhomboid family protein","Antitoxin VapB32 @ Antitoxin to Toxin 1, PIN domain","missense_variantMODERATE"]
["G01491","NC_000962",1244240,"C","T","3866.3","122.0","0.95","Synon","gtc","gtT","534C>T","Val178Val",null,"fig|83332.12.peg.1255","Rv1121","zwf1","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)","hypothetical protein","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","synonymous_variantLOW"]
["G01492","NC_000962",1244240,"C","T","10992.0","353.0","0.99","Synon","gtc","gtT","534C>T","Val178Val",null,"fig|83332.12.peg.1255","Rv1121","zwf1","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)","hypothetical protein","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","synonymous_variantLOW"]
["G01222","NC_000962",1244700,"T","C",{"v":925552,"d":"925,552"},"29.0","1.00","Synon","tta","Cta","994T>C","Leu332Leu",null,"fig|83332.12.peg.1255","Rv1121","zwf1","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)","hypothetical protein","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","synonymous_variantLOW"]
["MP1","NC_000962",1244700,"T","C","6717.42","195.0","1.00","Synon","tta","Cta","994T>C","Leu332Leu",null,"fig|83332.12.peg.1255","Rv1121","zwf1","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)","hypothetical protein","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","synonymous_variantLOW"]
[7739,"NC_000962",1248382,"A","G","3014.26","94.0","1.00","Nonsyn","agc","Ggc","301A>G","Ser101Gly",null,"fig|83332.12.peg.1260","Rv1125",null,"hypothetical protein Rv1125","Epoxide hydrolase (EC 3.3.2.9)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",1248936,"G","C",{"v":584391,"d":"584,391"},"19.0","1.00","Synon","ccg","ccC","855G>C","Pro285Pro",null,"fig|83332.12.peg.1260","Rv1125",null,"hypothetical protein Rv1125","Epoxide hydrolase (EC 3.3.2.9)","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",1248978,"T","C","2880.4","98.0","1.00","Synon","gct","gcC","897T>C","Ala299Ala",null,"fig|83332.12.peg.1260","Rv1125",null,"hypothetical protein Rv1125","Epoxide hydrolase (EC 3.3.2.9)","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",1250340,"A","G","14744.2","468.0","0.99","Synon","gct","gcC","1065T>C","Ala355Ala",null,"fig|83332.12.peg.1262","Rv1127c","ppdK","Pyruvate,phosphate dikinase (EC 2.7.9.1)","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",1250357,"T","G",{"v":628694,"d":"628,694"},"20.0","1.00","Nonsyn","acg","Ccg","1048A>C","Thr350Pro",null,"fig|83332.12.peg.1262","Rv1127c","ppdK","Pyruvate,phosphate dikinase (EC 2.7.9.1)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",1250357,"T","G","8230.16","257.0","1.00","Nonsyn","acg","Ccg","1048A>C","Thr350Pro",null,"fig|83332.12.peg.1262","Rv1127c","ppdK","Pyruvate,phosphate dikinase (EC 2.7.9.1)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",1250357,"T","G","4696.13","157.0","0.91","Nonsyn","acg","Ccg","1048A>C","Thr350Pro",null,"fig|83332.12.peg.1262","Rv1127c","ppdK","Pyruvate,phosphate dikinase (EC 2.7.9.1)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",1251199,"C","T","7312.76","214.0","1.00","Nonsyn","gga","gAa","206G>A","Gly69Glu",null,"fig|83332.12.peg.1262","Rv1127c","ppdK","Pyruvate,phosphate dikinase (EC 2.7.9.1)","hypothetical protein","hypothetical protein","missense_variantLOW"]
[58,"NC_000962",1252164,"T","C","5646.42","171.0","1.00","Nonsyn","gaa","gGa","767A>G","Glu256Gly",null,"fig|83332.12.peg.1264","Rv1128c",null,"13E12 repeat family protein","hypothetical protein","XRE family transcriptional regulator MSMEG_6643","missense_variantMODERATE"]
[7011,"NC_000962",1254562,"A","G","4332.38","130.0","1.00",{"$nulls":10},"XRE family transcriptional regulator MSMEG_6643","2-methylcitrate dehydratase (EC 4.2.1.79)","intergenic_regionMODIFIER"]
["G01492","NC_000962",1256012,"G","T","8855.41","281.0","0.99","Synon","cgg","cgT","1404G>T","Arg468Arg",null,"fig|83332.12.peg.1266","Rv1130",null,"2-methylcitrate dehydratase (EC 4.2.1.79)","XRE family transcriptional regulator MSMEG_6643","2-methylcitrate synthase (EC 2.3.3.5)","synonymous_variantLOW"]
[7739,"NC_000962",1256012,"G","T","2879.83","93.0","1.00","Synon","cgg","cgT","1404G>T","Arg468Arg",null,"fig|83332.12.peg.1266","Rv1130",null,"2-methylcitrate dehydratase (EC 4.2.1.79)","XRE family transcriptional regulator MSMEG_6643","2-methylcitrate synthase (EC 2.3.3.5)","synonymous_variantLOW"]
[54,"NC_000962",1259634,"A","G",{"v":245111,"d":"245,111"},"11.0","0.85","Synon","cgt","cgC","1713T>C","Arg571Arg",null,"fig|83332.12.peg.1269","Rv1133c","metE","5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)","putative membrane protein","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",1260134,"C","T",{"v":862826,"d":"862,826"},"30.0","0.97","Nonsyn","gcg","Acg","1213G>A","Ala405Thr",null,"fig|83332.12.peg.1269","Rv1133c","metE","5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)","putative membrane protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",1260134,"C","T","4522.25","136.0","1.00","Nonsyn","gcg","Acg","1213G>A","Ala405Thr",null,"fig|83332.12.peg.1269","Rv1133c","metE","5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)","putative membrane protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",1273250,"GC","GAC","1097.63","36.0","1.00","Insertion","gcgctt","gcGACtt","829_830insA","Leu277_Arg278fs","yes","fig|83332.12.peg.1284","Rv1145","mmpL13a","Transmembrane transport protein MmpL13","hypothetical protein","Transmembrane transport protein MmpL13","frameshift_variantHIGH"]
[7739,"NC_000962",1277869,"GTA","GTTA","781.55","45.0","0.94","Insertion",{"$nulls":9},"13E12 repeat family protein","Mobile element protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",1281118,"T","C","3304.96","106.0","1.00","Nonsyn","acg","Gcg","313A>G","Thr105Ala",null,"fig|83332.12.peg.1295","Rv1154c",null,"hypothetical protein","Tetracenomycin polyketide synthesis O-methyltransferase TcmP","F420H2-dependent reductase, Rv1155","missense_variantMODERATE"]
["G01491","NC_000962",1281771,"T","C","3216.09","100.0","0.98","Nonsyn","tcg","Ccg","343T>C","Ser115Pro",null,"fig|83332.12.peg.1296","Rv1155",null,"F420H2-dependent reductase, Rv1155","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",1281771,"T","C","7356.5","227.0","0.97","Nonsyn","tcg","Ccg","343T>C","Ser115Pro",null,"fig|83332.12.peg.1296","Rv1155",null,"F420H2-dependent reductase, Rv1155","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",1287112,"T","C","5612.35","167.0","0.99",{"$nulls":10},"Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)","Respiratory nitrate reductase alpha chain (EC 1.7.99.4)","intergenic_regionMODERATE"]
["MP1","NC_000962",1287112,"T","C","5384.49","162.0","0.99",{"$nulls":10},"Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)","Respiratory nitrate reductase alpha chain (EC 1.7.99.4)","intergenic_regionMODERATE"]
[54,"NC_000962",1292102,"A","G","2542.62","83.0","0.99","Synon","cca","ccG","1038A>G","Pro346Pro",null,"fig|83332.12.peg.1307","Rv1162","narH","Respiratory nitrate reductase beta chain (EC 1.7.99.4)","Respiratory nitrate reductase alpha chain (EC 1.7.99.4)","Respiratory nitrate reductase delta chain (EC 1.7.99.4)","synonymous_variantLOW"]
[58,"NC_000962",1295949,"C","T",{"v":454521,"d":"454,521"},"15.0","1.00","Synon","ccc","ccT","1782C>T","Pro594Pro",null,"fig|83332.12.peg.1310","Rv1165","typA","GTP-binding protein TypA/BipA","Respiratory nitrate reductase gamma chain (EC 1.7.99.4)","ABC transporter, substrate-binding protein LpqW","synonymous_variantLOW"]
[7011,"NC_000962",1300138,"T","A","2318.05","77.0","0.99",{"$nulls":10},"PE family protein ","1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase (EC 3.5.1.103)","intergenic_regionMODIFIER"]
["G01492","NC_000962",1302283,"T","G","8074.52","267.0","0.98","Nonsyn","caa","caC","399A>C","Gln133His",null,"fig|83332.12.peg.1318","Rv1172c","PE12","PE family protein ","putative membrane protein","7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1 / 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2","missense_variantMODERATE"]
["G01222","NC_000962",1302899,"A","G",{"v":772024,"d":"772,024"},"24.0","1.00",{"$nulls":10},"PE family protein ","7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1 / 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2","intergenic_regionMODIFIER"]
["MP1","NC_000962",1302899,"A","G","6451.29","184.0","1.00",{"$nulls":10},"PE family protein ","7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1 / 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2","intergenic_regionMODIFIER"]
[64,"NC_000962",1306259,"A","G","1170.98","41.0","0.95","Synon","gct","gcC","1968T>C","Ala656Ala",null,"fig|83332.12.peg.1321","Rv1175c","fadH","2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)","Low molecular weight T-cell antigen TB8.4, predicted hemophore (see TIGR04529)","Transcriptional regulator, PadR family","synonymous_variantLOW"]
["MP2","NC_000962",1306259,"A","G","7047.87","206.0","1.00","Synon","gct","gcC","1968T>C","Ala656Ala",null,"fig|83332.12.peg.1321","Rv1175c","fadH","2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)","Low molecular weight T-cell antigen TB8.4, predicted hemophore (see TIGR04529)","Transcriptional regulator, PadR family","synonymous_variantLOW"]
[58,"NC_000962",1306281,"A","C",{"v":306546,"d":"306,546"},"14.0","0.78","Nonsyn","atc","aGc","1946T>G","Ile649Ser",null,"fig|83332.12.peg.1321","Rv1175c","fadH","2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)","Low molecular weight T-cell antigen TB8.4, predicted hemophore (see TIGR04529)","Transcriptional regulator, PadR family","missense_variantMODERATE"]
[7011,"NC_000962",1307598,"C","G","3187.18","101.0","1.00","Nonsyn","tgc","tCc","629G>C","Cys210Ser",null,"fig|83332.12.peg.1321","Rv1175c","fadH","2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)","Low molecular weight T-cell antigen TB8.4, predicted hemophore (see TIGR04529)","Transcriptional regulator, PadR family","missense_variantMODERATE"]
["G01492","NC_000962",1313337,"AA","AGC","8574.52","282.0","0.99","Insertion",{"$nulls":9},"DNA or RNA helicases of superfamily II","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","intergenic_regionMODIFIER"]
[7011,"NC_000962",1313911,"T","C","2792.09","87.0","0.99","Nonsyn","tcg","Ccg","187T>C","Ser63Pro",null,"fig|83332.12.peg.1326","Rv1180","pks3","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","DNA or RNA helicases of superfamily II","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","missense_variantMODERATE"]
[54,"NC_000962",1313911,"T","C","1066.61","36.0","0.92","Nonsyn","tcg","Ccg","187T>C","Ser63Pro",null,"fig|83332.12.peg.1326","Rv1180","pks3","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","DNA or RNA helicases of superfamily II","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","missense_variantMODERATE"]
["MP2","NC_000962",1315191,"A","C","7066.13","209.0","1.00","Nonsyn","taa","taC","1467A>C","Ter489Tyrext*?",null,"fig|83332.12.peg.1326","Rv1180","pks3","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","DNA or RNA helicases of superfamily II","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","stop_lostHIGH"]
[58,"NC_000962",1315884,"G","A","4987.67","154.0","1.00","Synon","gcg","gcA","651G>A","Ala217Ala",null,"fig|83332.12.peg.1327","Rv1181","pks4","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","PKS-associated protein PapA, condensation domain-containing","synonymous_variantLOW"]
[64,"NC_000962",1315884,"G","A","4931.25","152.0","0.99","Synon","gcg","gcA","651G>A","Ala217Ala",null,"fig|83332.12.peg.1327","Rv1181","pks4","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","PKS-associated protein PapA, condensation domain-containing","synonymous_variantLOW"]
[7739,"NC_000962",1327402,"T","C","3623.91","114.0","1.00","Synon","gaa","gaG","111A>G","Glu37Glu",null,"fig|83332.12.peg.1331","Rv1185c","fadD21","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD21","FIG01386146: Possible exported protein, Rv1184c","Regulator of polyketide synthase expression","synonymous_variantLOW"]
["G01498","NC_000962",1327890,"G","A","2319.04","79.0","0.99","Synon","gac","gaT","1416C>T","Asp472Asp",null,"fig|83332.12.peg.1332","Rv1186c",null,"Regulator of polyketide synthase expression","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD21","Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88)","synonymous_variantMODERATE"]
["G01491","NC_000962",1331696,"A","C","5652.12","175.0","0.99","Synon","agg","Cgg","676A>C","Arg226Arg",null,"fig|83332.12.peg.1334","Rv1188",null,"Proline dehydrogenase (EC 1.5.5.2)","Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88)","RNA polymerase sigma factor","synonymous_variantLOW"]
[54,"NC_000962",1331696,"A","C","2849.27","88.0","1.00","Synon","agg","Cgg","676A>C","Arg226Arg",null,"fig|83332.12.peg.1334","Rv1188",null,"Proline dehydrogenase (EC 1.5.5.2)","Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88)","RNA polymerase sigma factor","synonymous_variantMODERATE"]
["MP2","NC_000962",1338520,"A","T","8946.63","266.0","1.00",{"$nulls":10},"Possible regulatory protein Trx","PE family protein ","intergenic_regionMODIFIER"]
[58,"NC_000962",1339852,"G","T","1156.55","38.0","1.00","Synon","ccg","ccT","504G>T","Pro168Pro",null,"fig|83332.12.peg.1342","Rv1196","PPE18","PPE family protein, SVP subgroup ","PE family protein ","ESAT-6-like protein EsxK","synonymous_variantMODERATE"]
["G01222","NC_000962",1340052,"G","T","1290.39","42.0","1.00","Nonsyn","cgg","cTg","704G>T","Arg235Leu",null,"fig|83332.12.peg.1342","Rv1196","PPE18","PPE family protein, SVP subgroup ","PE family protein ","ESAT-6-like protein EsxK","missense_variantMODERATE"]
[58,"NC_000962",1340052,"G","T","4777.83","150.0","0.98","Nonsyn","cgg","cTg","704G>T","Arg235Leu",null,"fig|83332.12.peg.1342","Rv1196","PPE18","PPE family protein, SVP subgroup ","PE family protein ","ESAT-6-like protein EsxK","missense_variantMODERATE"]
[7011,"NC_000962",1340093,"A","G","1755.34","72.0","1.00","Nonsyn","atg","Gtg","745A>G","Met249Val",null,"fig|83332.12.peg.1342","Rv1196","PPE18","PPE family protein, SVP subgroup ","PE family protein ","ESAT-6-like protein EsxK","missense_variantMODERATE"]
["G01492","NC_000962",1341040,"CTCAC","ATCAT","9267.5","299.0","0.96","Nonsyn","gctcac","gATCAT","35CTCAC>ATCAT","AlaHis12AspHis",null,"fig|83332.12.peg.1344","Rv1198","esxL","ESAT-6-like protein EsxL","ESAT-6-like protein EsxK","Mobile element protein","missense_variantMODIFIER"]
["G01222","NC_000962",1347173,"C","T",{"v":336976,"d":"336,976"},"13.0","1.00","Synon","ctg","ctA","1434G>A","Leu478Leu",null,"fig|83332.12.peg.1351","Rv1204c",null,"AAA-ATPase, domain of unknown function, and LuxR DNA-binding domain","AAA-ATPase, domain of unknown function, and LuxR DNA-binding domain","Phosphoribohydrolase involved in Mycobacterial cytokinins production, homolog of plant cytokinin-activating enzyme LOG","synonymous_variantLOW"]
["MP1","NC_000962",1347173,"C","T","7145.24","214.0","1.00","Synon","ctg","ctA","1434G>A","Leu478Leu",null,"fig|83332.12.peg.1351","Rv1204c",null,"AAA-ATPase, domain of unknown function, and LuxR DNA-binding domain","AAA-ATPase, domain of unknown function, and LuxR DNA-binding domain","Phosphoribohydrolase involved in Mycobacterial cytokinins production, homolog of plant cytokinin-activating enzyme LOG","synonymous_variantLOW"]
[64,"NC_000962",1351172,"A","G",{"v":794745,"d":"794,745"},"27.0","0.96",{"$nulls":10},"Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD6","hypothetical protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",1352253,"A","G","2244.52","71.0","1.00","Nonsyn","gaa","gGa","110A>G","Glu37Gly",null,"fig|83332.12.peg.1356","Rv1208",null,"Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266)","Non functional Dihydropteroate synthase 2","FIG00820927: hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",1355937,"C","T","3274.86","103.0","1.00","Synon","ttc","ttT","84C>T","Phe28Phe",null,"fig|83332.12.peg.1361","Rv1213","glgC","Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)","Predicted glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21), Actinobacterial type","PE family protein ","synonymous_variantLOW"]
[7011,"NC_000962",1355937,"C","T","2928.53","90.0","1.00","Synon","ttc","ttT","84C>T","Phe28Phe",null,"fig|83332.12.peg.1361","Rv1213","glgC","Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)","Predicted glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21), Actinobacterial type","PE family protein ","synonymous_variantLOW"]
["G01492","NC_000962",1358940,"C","A","10928.0","356.0","0.98","Nonsyn","gca","Tca","505G>T","Ala169Ser",null,"fig|83332.12.peg.1363","Rv1215c",null,"Cocaine esterase (EC 3.1.1.-)","PE family protein ","Integral membrane protein","missense_variantMODERATE"]
[7739,"NC_000962",1360209,"T","C","2871.43","89.0","0.99","Synon","gca","gcG","1593A>G","Ala531Ala",null,"fig|83332.12.peg.1365","Rv1217c",null,"Efflux ABC transporter, permease protein","Integral membrane protein","Efflux ABC transporter, ATP-binding protein","synonymous_variantLOW"]
[54,"NC_000962",1360209,"T","C","2342.67","81.0","0.93","Synon","gca","gcG","1593A>G","Ala531Ala",null,"fig|83332.12.peg.1365","Rv1217c",null,"Efflux ABC transporter, permease protein","Integral membrane protein","Efflux ABC transporter, ATP-binding protein","synonymous_variantLOW"]
["MP2","NC_000962",1362006,"T","C","8509.5","246.0","1.00","Nonsyn","caa","cGa","728A>G","Gln243Arg",null,"fig|83332.12.peg.1366","Rv1218c",null,"Efflux ABC transporter, ATP-binding protein","Efflux ABC transporter, permease protein","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
[58,"NC_000962",1365837,"CGGG","CGGGGG",{"v":357691,"d":"357,691"},"12.0","0.75","Insertion",{"$nulls":9},"Anti-sigma factor RseA","Serine protease HtrA (DegP protein)","intergenic_regionMODIFIER"]
[7011,"NC_000962",1366736,"T","C","2271.17","77.0","1.00","Nonsyn","ttc","Ctc","850T>C","Phe284Leu",null,"fig|83332.12.peg.1371","Rv1223","htrA","Serine protease HtrA (DegP protein)","Anti-sigma factor RseA","Twin-arginine translocation protein TatB","missense_variantMODERATE"]
["G01492","NC_000962",1367208,"G","A","12016.5","390.0","0.99","Nonsyn","agc","aAc","1322G>A","Ser441Asn",null,"fig|83332.12.peg.1371","Rv1223","htrA","Serine protease HtrA (DegP protein)","Anti-sigma factor RseA","Twin-arginine translocation protein TatB","missense_variantMODERATE"]
["G01498","NC_000962",1367208,"G","A","2356.38","80.0","0.95","Nonsyn","agc","aAc","1322G>A","Ser441Asn",null,"fig|83332.12.peg.1371","Rv1223","htrA","Serine protease HtrA (DegP protein)","Anti-sigma factor RseA","Twin-arginine translocation protein TatB","missense_variantMODERATE"]
["G01491","NC_000962",1367484,"T","G","4818.99","149.0","0.99","Nonsyn","tgg","Ggg","22T>G","Trp8Gly",null,"fig|83332.12.peg.1372","Rv1224","tatB","Twin-arginine translocation protein TatB","Serine protease HtrA (DegP protein)","HAD-superfamily subfamily IIA hydrolase, hypothetical 2","missense_variantMODERATE"]
[54,"NC_000962",1367484,"T","G","11137.2","371.0","0.88","Nonsyn","tgg","Ggg","22T>G","Trp8Gly",null,"fig|83332.12.peg.1372","Rv1224","tatB","Twin-arginine translocation protein TatB","Serine protease HtrA (DegP protein)","HAD-superfamily subfamily IIA hydrolase, hypothetical 2","missense_variantMODERATE"]
["MP2","NC_000962",1368947,"A","G","4801.72","144.0","1.00","Nonsyn","gtg","gCg","1349T>C","Val450Ala",null,"fig|83332.12.peg.1374","Rv1226c",null,"transmembrane protein, distant homology with ydbT","HAD-superfamily subfamily IIA hydrolase, hypothetical 2","transmembrane protein, distant homology with ydbS","missense_variantMODERATE"]
[58,"NC_000962",1374065,"T","C","1661.43","50.0","1.00","Nonsyn","agc","Ggc","43A>G","Ser15Gly",null,"fig|83332.12.peg.1379","Rv1230c",null,"putative membrane protein","Mrp protein homolog","FIG00816212: Putative membrane protein","missense_variantMODERATE"]
[7739,"NC_000962",1376458,"G","A","2704.41","89.0","1.00",{"$nulls":10},"hypothetical protein","Putative transmembrane protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",1376568,"CGGGGGGT","CGGGGGT","2152.82","78.0","0.85","Deletion",{"$nulls":9},"hypothetical protein","Putative transmembrane protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",1382628,"T","C","3247.48","103.0","0.97","Nonsyn","aaa","Gaa","415A>G","Lys139Glu",null,"fig|83332.12.peg.1388","Rv1239c","corA","Magnesium and cobalt transport protein CorA","ABC transporter, ATP-binding protein (cluster 13, osmolytes)","Malate dehydrogenase (EC 1.1.1.37)","missense_variantMODERATE"]
["G01492","NC_000962",1382628,"T","C","10419.7","339.0","1.00","Nonsyn","aaa","Gaa","415A>G","Lys139Glu",null,"fig|83332.12.peg.1388","Rv1239c","corA","Magnesium and cobalt transport protein CorA","ABC transporter, ATP-binding protein (cluster 13, osmolytes)","Malate dehydrogenase (EC 1.1.1.37)","missense_variantMODERATE"]
["G01222","NC_000962",1387580,"C","A",{"v":929231,"d":"929,231"},"30.0","1.00","Nonsyn","caa","Aaa","847C>A","Gln283Lys",null,"fig|83332.12.peg.1393","Rv1244","lpqZ","ABC transporter, substrate-binding protein (cluster 13, osmolytes)","PE_PGRS family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","missense_variantMODERATE"]
["MP1","NC_000962",1387580,"C","A","2899.48","86.0","0.99","Nonsyn","caa","Aaa","847C>A","Gln283Lys",null,"fig|83332.12.peg.1393","Rv1244","lpqZ","ABC transporter, substrate-binding protein (cluster 13, osmolytes)","PE_PGRS family protein ","Oxidoreductase, short-chain dehydrogenase/reductase family","missense_variantMODERATE"]
[64,"NC_000962",1390089,"C","T",{"v":215007,"d":"215,007"},"83.0","0.50","Synon","gcg","gcA","2964G>A","Ala988Ala",null,"fig|83332.12.peg.1397","Rv1248c","kgd","Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) / 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) @ 2-oxoglutarate decarboxylase (EC 4.1.1.71) @ 2-hydroxy-3-oxoadipate synthase (EC 2.2.1.5)","RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)","putative membrane protein","synonymous_variantLOW"]
[7739,"NC_000962",1390763,"C","T","2459.91","77.0","0.99","Nonsyn","gtg","Atg","2290G>A","Val764Met",null,"fig|83332.12.peg.1397","Rv1248c","kgd","Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) / 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) @ 2-oxoglutarate decarboxylase (EC 4.1.1.71) @ 2-hydroxy-3-oxoadipate synthase (EC 2.2.1.5)","RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)","putative membrane protein","missense_variantMODERATE"]
["G01498","NC_000962",1391466,"C","T","3624.98","118.0","0.98","Synon","gag","gaA","1587G>A","Glu529Glu",null,"fig|83332.12.peg.1397","Rv1248c","kgd","Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) / 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) @ 2-oxoglutarate decarboxylase (EC 4.1.1.71) @ 2-hydroxy-3-oxoadipate synthase (EC 2.2.1.5)","RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)","putative membrane protein","synonymous_variantLOW"]
["G01491","NC_000962",1391862,"A","C","3907.15","120.0","0.99","Synon","gct","gcG","1191T>G","Ala397Ala",null,"fig|83332.12.peg.1397","Rv1248c","kgd","Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) / 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) @ 2-oxoglutarate decarboxylase (EC 4.1.1.71) @ 2-hydroxy-3-oxoadipate synthase (EC 2.2.1.5)","RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)","putative membrane protein","synonymous_variantLOW"]
[54,"NC_000962",1391862,"A","C","1265.36","41.0","0.98","Synon","gct","gcG","1191T>G","Ala397Ala",null,"fig|83332.12.peg.1397","Rv1248c","kgd","Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) / 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) @ 2-oxoglutarate decarboxylase (EC 4.1.1.71) @ 2-hydroxy-3-oxoadipate synthase (EC 2.2.1.5)","RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)","putative membrane protein","synonymous_variantLOW"]
["G01491","NC_000962",1393626,"A","G","4654.2","143.0","0.99","Synon","ctt","ctC","255T>C","Leu85Leu",null,"fig|83332.12.peg.1398","Rv1249c",null,"putative membrane protein","Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) / 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) @ 2-oxoglutarate decarboxylase (EC 4.1.1.71) @ 2-hydroxy-3-oxoadipate synthase (EC 2.2.1.5)","Uncharacterized MFS-type transporter","synonymous_variantLOW"]
[54,"NC_000962",1393626,"A","G","11181.5","349.0","0.98","Synon","ctt","ctC","255T>C","Leu85Leu",null,"fig|83332.12.peg.1398","Rv1249c",null,"putative membrane protein","Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) / 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) @ 2-oxoglutarate decarboxylase (EC 4.1.1.71) @ 2-hydroxy-3-oxoadipate synthase (EC 2.2.1.5)","Uncharacterized MFS-type transporter","synonymous_variantLOW"]
["MP2","NC_000962",1395010,"A","G","7136.37","207.0","1.00","Nonsyn","agg","Ggg","832A>G","Arg278Gly",null,"fig|83332.12.peg.1399","Rv1250",null,"Uncharacterized MFS-type transporter","putative membrane protein","Superfamily I DNA and RNA helicases and helicase subunits","missense_variantLOW"]
[58,"NC_000962",1397201,"A","G","3384.53","104.0","0.99","Synon","aat","aaC","2040T>C","Asn680Asn",null,"fig|83332.12.peg.1400","Rv1251c",null,"Superfamily I DNA and RNA helicases and helicase subunits","Uncharacterized MFS-type transporter","Lipoprotein LprE","synonymous_variantLOW"]
[7011,"NC_000962",1400396,"A","G","2023.38","66.0","1.00","Nonsyn","atg","Gtg","427A>G","Met143Val",null,"fig|83332.12.peg.1404","Rv1253","deaD","DEAD-box ATP-dependent RNA helicase DeaD (","hypothetical protein","FIG143263: Glycosyl transferase / Lysophospholipid acyltransferase","missense_variantMODIFIER"]
["G01492","NC_000962",1403416,"C","T","10615.1","360.0","0.97","Synon","ccg","ccA","1176G>A","Pro392Pro",null,"fig|83332.12.peg.1407","Rv1256c","cyMP130","Cytochrome P450 130","Transcriptional regulator, AcrR family","Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD","synonymous_variantLOW"]
["G01222","NC_000962",1404738,"G","A","1004.53","32.0","1.00","Synon","ctc","ctT","1347C>T","Leu449Leu",null,"fig|83332.12.peg.1408","Rv1257c",null,"Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD","Cytochrome P450 130","MFS-type drug/proton antiporter Rv1258c family ","synonymous_variantLOW"]
["MP1","NC_000962",1404738,"G","A","6702.61","197.0","1.00","Synon","ctc","ctT","1347C>T","Leu449Leu",null,"fig|83332.12.peg.1408","Rv1257c",null,"Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD","Cytochrome P450 130","MFS-type drug/proton antiporter Rv1258c family ","synonymous_variantLOW"]
[54,"NC_000962",1404738,"G","A","4249.52","129.0","1.00","Synon","ctc","ctT","1347C>T","Leu449Leu",null,"fig|83332.12.peg.1408","Rv1257c",null,"Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD","Cytochrome P450 130","MFS-type drug/proton antiporter Rv1258c family ","synonymous_variantLOW"]
["MP2","NC_000962",1404944,"A","G","5180.28","156.0","1.00","Nonsyn","tac","Cac","1141T>C","Tyr381His",null,"fig|83332.12.peg.1408","Rv1257c",null,"Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD","Cytochrome P450 130","MFS-type drug/proton antiporter Rv1258c family ","missense_variantMODERATE"]
[58,"NC_000962",1410062,"G","C","1432.3","47.0","1.00","Nonsyn","ccg","cGg","302C>G","Pro101Arg",null,"fig|83332.12.peg.1413","Rv1262c",null,"Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)","AclJ","putative amidase Rv1263","missense_variantMODERATE"]
[58,"NC_000962",1411941,"G","T",{"v":592869,"d":"592,869"},"20.0","1.00","Synon","ctg","ctT","36G>T","Leu12Leu",null,"fig|83332.12.peg.1415","Rv1264",null,"Adenylate cyclase (EC 4.6.1.1)","putative amidase Rv1263","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",1413148,"C","T","2533.82","84.0","0.99",{"$nulls":10},"Adenylate cyclase (EC 4.6.1.1)","hypothetical protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",1414021,"C","T","4302.44","136.0","0.99","Nonsyn","cgg","cAg","1865G>A","Arg622Gln",null,"fig|83332.12.peg.1418","Rv1266c","pknH","Serine/threonine-protein kinase PknD (EC 2.7.11.1)","hypothetical protein","Transcriptional regulatory protein EmbR","missense_variantMODERATE"]
[54,"NC_000962",1414021,"C","T","3090.14","96.0","0.99","Nonsyn","cgg","cAg","1865G>A","Arg622Gln",null,"fig|83332.12.peg.1418","Rv1266c","pknH","Serine/threonine-protein kinase PknD (EC 2.7.11.1)","hypothetical protein","Transcriptional regulatory protein EmbR","missense_variantMODERATE"]
["MP2","NC_000962",1417554,"G","C","7308.65","216.0","1.00","Synon","tcc","tcG","93C>G","Ser31Ser",null,"fig|83332.12.peg.1420",null,null,"hypothetical protein","Transcriptional regulatory protein EmbR","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",1417554,"G","C","7424.09","215.0","1.00","Synon","tcc","tcG","93C>G","Ser31Ser",null,"fig|83332.12.peg.1420",null,null,"hypothetical protein","Transcriptional regulatory protein EmbR","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",1424699,"T","C","6720.07","203.0","1.00","Nonsyn","ctg","cCg","470T>C","Leu157Pro",null,"fig|83332.12.peg.1427","Rv1274","lprB","Lipoprotein LprB","Efflux ABC transporter, permease/ATP-binding protein SCO2463","Lipoprotein LprC","missense_variantMODERATE"]
[7739,"NC_000962",1431918,"T","C","2932.71","91.0","0.99","Nonsyn","gac","gGc","1385A>G","Asp462Gly",null,"fig|83332.12.peg.1433","Rv1280c","oppA","Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)","Oxidoreductase, GMC family","Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1) / Oligopeptide ABC transporter, ATP-binding protein OppF (TC 3.A.1.5.1)","missense_variantMODERATE"]
["G01498","NC_000962",1436362,"C","T","2573.0","96.0","0.89","Synon","acg","acA","756G>A","Thr252Thr",null,"fig|83332.12.peg.1436","Rv1283c","oppB","Oligopeptide ABC transporter, permease protein OppB (TC 3.A.1.5.1)","Oligopeptide ABC transporter, permease protein OppC (TC 3.A.1.5.1)","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",1437945,"T","C","3068.67","95.0","0.99","Nonsyn","ttt","Ctt","19T>C","Phe7Leu",null,"fig|83332.12.peg.1439","Rv1285","cysD","Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)","Carbonic anhydrase, beta class (EC 4.2.1.1)","Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25)","missense_variantMODERATE"]
[54,"NC_000962",1437945,"T","C","4618.36","242.0","0.66","Nonsyn","ttt","Ctt","19T>C","Phe7Leu",null,"fig|83332.12.peg.1439","Rv1285","cysD","Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)","Carbonic anhydrase, beta class (EC 4.2.1.1)","Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25)","missense_variantMODERATE"]
["G01492","NC_000962",1439704,"G","A","8979.69","295.0","1.00","Synon","cgg","cgA","798G>A","Arg266Arg",null,"fig|83332.12.peg.1440","Rv1286","cysN","Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25)","Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)","Predicted transcriptional regulator of sulfate adenylyltransferase, Rrf2 family","synonymous_variantMODERATE"]
[64,"NC_000962",1440469,"C","G",{"v":401249,"d":"401,249"},"18.0","0.82","Synon","ccc","ccG","1563C>G","Pro521Pro",null,"fig|83332.12.peg.1440","Rv1286","cysN","Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25)","Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)","Predicted transcriptional regulator of sulfate adenylyltransferase, Rrf2 family","synonymous_variantLOW"]
["MP2","NC_000962",1440469,"C","G","7269.61","215.0","1.00","Synon","ccc","ccG","1563C>G","Pro521Pro",null,"fig|83332.12.peg.1440","Rv1286","cysN","Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25)","Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)","Predicted transcriptional regulator of sulfate adenylyltransferase, Rrf2 family","synonymous_variantLOW"]
[58,"NC_000962",1441399,"T","C","1546.49","52.0","0.96","Synon","ttg","Ctg","52T>C","Leu18Leu",null,"fig|83332.12.peg.1442","Rv1288",null,"Putative esterase","Predicted transcriptional regulator of sulfate adenylyltransferase, Rrf2 family","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",1442734,"C","G","2773.63","106.0","0.98",{"$nulls":10},"Putative esterase","hypothetical protein","intergenic_regionHIGH"]
["G01492","NC_000962",1445781,"A","G","12448.8","392.0","0.99","Synon","gct","gcC","54T>C","Ala18Ala",null,"fig|83332.12.peg.1446","Rv1291c",null,"FIG00823516: hypothetical protein","hypothetical protein","tRNA-Arg-CCG","synonymous_variantLOW"]
["G01222","NC_000962",1446482,"A","G",{"v":467346,"d":"467,346"},"15.0","1.00","Nonsyn","gaa","gGa","104A>G","Glu35Gly",null,"fig|83332.12.peg.1447","Rv1292","argS","Arginyl-tRNA synthetase (EC 6.1.1.19)","tRNA-Arg-CCG","Diaminopimelate decarboxylase (EC 4.1.1.20)","missense_variantLOW"]
["MP1","NC_000962",1446482,"A","G","6255.96","186.0","0.99","Nonsyn","gaa","gGa","104A>G","Glu35Gly",null,"fig|83332.12.peg.1447","Rv1292","argS","Arginyl-tRNA synthetase (EC 6.1.1.19)","tRNA-Arg-CCG","Diaminopimelate decarboxylase (EC 4.1.1.20)","missense_variantLOW"]
[64,"NC_000962",1454047,"C","A","1504.86","49.0","0.98","Nonsyn","ccc","Acc","844C>A","Pro282Thr",null,"fig|83332.12.peg.1453","Rv1297","rho","Transcription termination factor Rho","Homoserine kinase (EC 2.7.1.39)","hypothetical protein","missense_variantLOW"]
[7739,"NC_000962",1454811,"C","T","2573.22","88.0","0.99","Synon","aac","aaT","1608C>T","Asn536Asn",null,"fig|83332.12.peg.1453","Rv1297","rho","Transcription termination factor Rho","Homoserine kinase (EC 2.7.1.39)","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",1454811,"C","T","3797.97","123.0","0.99","Synon","aac","aaT","1608C>T","Asn536Asn",null,"fig|83332.12.peg.1453","Rv1297","rho","Transcription termination factor Rho","Homoserine kinase (EC 2.7.1.39)","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",1457144,"C","T","1984.05","63.0","1.00","Nonsyn","cgc","Tgc","517C>T","Arg173Cys",null,"fig|83332.12.peg.1457","Rv1300","hemK","Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297)","Peptide chain release factor 1","Threonylcarbamoyl-AMP synthase (EC 2.7.7.87)","missense_variantMODERATE"]
["G01498","NC_000962",1457621,"G","A","1765.26","67.0","0.86","Nonsyn","ggg","Agg","64G>A","Gly22Arg",null,"fig|83332.12.peg.1458","Rv1301",null,"Threonylcarbamoyl-AMP synthase (EC 2.7.7.87)","Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297)","Decaprenyl-phosphate N-acetylglucosaminephosphotransferase (EC 2.7.8.35)","missense_variantMODERATE"]
["G01491","NC_000962",1458144,"C","A","4156.03","134.0","0.99","Nonsyn","ccg","cAg","587C>A","Pro196Gln",null,"fig|83332.12.peg.1458","Rv1301",null,"Threonylcarbamoyl-AMP synthase (EC 2.7.7.87)","Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297)","Decaprenyl-phosphate N-acetylglucosaminephosphotransferase (EC 2.7.8.35)","missense_variantMODERATE"]
[54,"NC_000962",1458144,"C","A",{"v":482125,"d":"482,125"},"15.0","1.00","Nonsyn","ccg","cAg","587C>A","Pro196Gln",null,"fig|83332.12.peg.1458","Rv1301",null,"Threonylcarbamoyl-AMP synthase (EC 2.7.7.87)","Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297)","Decaprenyl-phosphate N-acetylglucosaminephosphotransferase (EC 2.7.8.35)","missense_variantMODERATE"]
["MP2","NC_000962",1459364,"T","G","6126.59","181.0","1.00","Nonsyn","gtt","gGt","1070T>G","Val357Gly",null,"fig|83332.12.peg.1459","Rv1302","rfe","Decaprenyl-phosphate N-acetylglucosaminephosphotransferase (EC 2.7.8.35)","Threonylcarbamoyl-AMP synthase (EC 2.7.7.87)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",1459576,"C","T","1358.36","43.0","1.00",{"$nulls":10},"Decaprenyl-phosphate N-acetylglucosaminephosphotransferase (EC 2.7.8.35)","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",1465741,"G","T","2466.85","87.0","1.00","Nonsyn","cag","caT","858G>T","Gln286His",null,"fig|83332.12.peg.1467","Rv1309","atpG","ATP synthase gamma chain (EC 3.6.3.14)","ATP synthase alpha chain (EC 3.6.3.14)","ATP synthase beta chain (EC 3.6.3.14)","missense_variantMODERATE"]
[7739,"NC_000962",1465741,"G","T","2366.59","82.0","0.99","Nonsyn","cag","caT","858G>T","Gln286His",null,"fig|83332.12.peg.1467","Rv1309","atpG","ATP synthase gamma chain (EC 3.6.3.14)","ATP synthase alpha chain (EC 3.6.3.14)","ATP synthase beta chain (EC 3.6.3.14)","missense_variantMODERATE"]
["G01498","NC_000962",1467735,"G","A","1737.43","60.0","0.95","Synon","ggg","ggA","36G>A","Gly12Gly",null,"fig|83332.12.peg.1470","Rv1312",null,"Uncharacterized protein Rv1312","ATP synthase epsilon chain (EC 3.6.3.14)","Mobile element protein","synonymous_variantLOW"]
["G01491","NC_000962",1471659,"C","T","2617.75","82.0","0.99",{"$nulls":10},"UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)","Small Subunit Ribosomal RNA","intergenic_regionMODIFIER"]
[54,"NC_000962",1471659,"C","T","8226.69","265.0","0.99",{"$nulls":10},"UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)","Small Subunit Ribosomal RNA","intergenic_regionMODIFIER"]
[64,"NC_000962",1479085,"T","C","1503.42","53.0","0.91","Nonsyn","atc","Gtc","34A>G","Ile12Val",null,"fig|83332.12.peg.1476","Rv1317c","alkA","Methylphosphotriester-DNA--protein-cysteine S-methyltransferase (EC 2.1.1.n11) / DNA-3-methyladenine glycosylase II (EC 3.2.2.21)","Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)","Adenylate cyclase (EC 4.6.1.1)","missense_variantMODERATE"]
[64,"NC_000962",1482627,"T","C","1198.08","47.0","0.87","Nonsyn","acg","Gcg","1591A>G","Thr531Ala",null,"fig|83332.12.peg.1479","Rv1320c",null,"Adenylate cyclase (EC 4.6.1.1)","Adenylate cyclase (EC 4.6.1.1)","Endonuclease NucS","missense_variantMODERATE"]
[7739,"NC_000962",1484708,"A","C","2715.63","88.0","1.00","Nonsyn","agc","Cgc","421A>C","Ser141Arg",null,"fig|83332.12.peg.1480","Rv1321",null,"Endonuclease NucS","Adenylate cyclase (EC 4.6.1.1)","ATP/GTP-binding protein","missense_variantMODERATE"]
["G01498","NC_000962",1485828,"C","T","3635.66","115.0","0.97","Synon","ccg","ccA","63G>A","Pro21Pro",null,"fig|83332.12.peg.1483",null,null,"hypothetical protein","Methylmalonyl-CoA epimerase (EC 5.1.99.1) @ Ethylmalonyl-CoA epimerase","3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)","synonymous_variantLOW"]
[7011,"NC_000962",1485828,"C","T","2371.37","73.0","0.97","Synon","ccg","ccA","63G>A","Pro21Pro",null,"fig|83332.12.peg.1483",null,null,"hypothetical protein","Methylmalonyl-CoA epimerase (EC 5.1.99.1) @ Ethylmalonyl-CoA epimerase","3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)","synonymous_variantLOW"]
["G01492","NC_000962",1489099,"G","A","4565.98","150.0","0.98","Synon","gcc","gcT","867C>T","Ala289Ala",null,"fig|83332.12.peg.1486","Rv1325c","PE_PGRS24","PE_PGRS family protein ","FIG000875: Thioredoxin domain-containing protein EC-YbbN","1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)","synonymous_variantMODERATE"]
["G01222","NC_000962",1490911,"G","A","1529.47","48.0","1.00","Nonsyn","ccg","Tcg","1402C>T","Pro468Ser",null,"fig|83332.12.peg.1487","Rv1326c","glgB","1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)","PE_PGRS family protein ","Putative glucanase glgE (EC 3.2.1.-)","missense_variantMODERATE"]
["MP1","NC_000962",1490911,"G","A","8778.06","257.0","1.00","Nonsyn","ccg","Tcg","1402C>T","Pro468Ser",null,"fig|83332.12.peg.1487","Rv1326c","glgB","1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)","PE_PGRS family protein ","Putative glucanase glgE (EC 3.2.1.-)","missense_variantMODERATE"]
[64,"NC_000962",1492194,"T","C",{"v":844907,"d":"844,907"},"28.0","1.00","Nonsyn","gac","gGc","119A>G","As7011Gly",null,"fig|83332.12.peg.1487","Rv1326c","glgB","1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)","PE_PGRS family protein ","Putative glucanase glgE (EC 3.2.1.-)","missense_variantMODERATE"]
[7739,"NC_000962",1496964,"G","T","2649.22","88.0","1.00","Nonsyn","gcc","Tcc","2401G>T","Ala801Ser",null,"fig|83332.12.peg.1489","Rv1328","glgP","Glycogen phosphorylase (EC 2.4.1.1)","Putative glucanase glgE (EC 3.2.1.-)","DinG family ATP-dependent helicase YoaA","missense_variantMODERATE"]
["G01498","NC_000962",1497324,"T","C","1569.46","57.0","0.95","Synon","tca","tcG","1842A>G","Ser614Ser",null,"fig|83332.12.peg.1490","Rv1329c","dinG","DinG family ATP-dependent helicase YoaA","Glycogen phosphorylase (EC 2.4.1.1)","Nicotinate phosphoribosyltransferase (EC 6.3.4.21)","synonymous_variantMODERATE"]
["G01491","NC_000962",1499274,"C","G","4587.4","144.0","1.00","Nonsyn","ggc","gCc","1202G>C","Gly401Ala",null,"fig|83332.12.peg.1491","Rv1330c",null,"Nicotinate phosphoribosyltransferase (EC 6.3.4.21)","DinG family ATP-dependent helicase YoaA","ATP-dependent Clp protease adaptor protein ClpS","missense_variantLOW"]
["G01498","NC_000962",1499274,"C","G","1573.14","53.0","1.00","Nonsyn","ggc","gCc","1202G>C","Gly401Ala",null,"fig|83332.12.peg.1491","Rv1330c",null,"Nicotinate phosphoribosyltransferase (EC 6.3.4.21)","DinG family ATP-dependent helicase YoaA","ATP-dependent Clp protease adaptor protein ClpS","missense_variantMODERATE"]
["G01491","NC_000962",1501979,"G","A","3906.43","123.0","0.98","Synon","acg","acA","381G>A","Thr127Thr",null,"fig|83332.12.peg.1494","Rv1333",null,"Possible amide hydrolase Rv1333","Transcriptional regulator","CysO-cysteine peptidase","synonymous_variantLOW"]
[54,"NC_000962",1501979,"G","A",{"v":507403,"d":"507,403"},"17.0","1.00","Synon","acg","acA","381G>A","Thr127Thr",null,"fig|83332.12.peg.1494","Rv1333",null,"Possible amide hydrolase Rv1333","Transcriptional regulator","CysO-cysteine peptidase","synonymous_variantLOW"]
["MP2","NC_000962",1504270,"G","A","5485.82","164.0","0.99","Nonsyn","gtc","Atc","847G>A","Val283Ile",null,"fig|83332.12.peg.1497","Rv1336","cysM","Cysteine synthase, CysO-dependent","Sulfur/cysteine carrier protein CysO","Rhomboid family protein","missense_variantMODERATE"]
[58,"NC_000962",1505194,"T","C",{"v":244407,"d":"244,407"},"8.0","1.00","Synon","ggt","ggC","120T>C","Gly40Gly",null,"fig|83332.12.peg.1499","Rv1338","murI","Glutamate racemase (EC 5.1.1.3)","Rhomboid family protein","Metal-dependent hydrolases of the beta-lactamase superfamily III","synonymous_variantLOW"]
[7011,"NC_000962",1505973,"G","A","2411.86","75.0","0.99",{"$nulls":10},"Glutamate racemase (EC 5.1.1.3)","Metal-dependent hydrolases of the beta-lactamase superfamily III","intergenic_regionMODIFIER"]
["G01492","NC_000962",1508682,"T","G","10493.2","352.0","0.98","Nonsyn","gag","gCg","200A>C","Glu67Ala",null,"fig|83332.12.peg.1504","Rv1343c","lprD","Lipoprotein LprD","Membrane protein Rv1342c","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",1523175,"A","C","1032.57","32.0","1.00","Synon","gct","gcG","858T>G","Ala286Ala",null,"fig|83332.12.peg.1517","Rv1355c","moeY","Molybdopterin biosynthesis protein MoeY","Sensory box/GGDEF family protein","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",1523175,"A","C","3760.4","119.0","0.97","Synon","gct","gcG","858T>G","Ala286Ala",null,"fig|83332.12.peg.1517","Rv1355c","moeY","Molybdopterin biosynthesis protein MoeY","Sensory box/GGDEF family protein","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",1523175,"A","C","3061.12","107.0","0.92","Synon","gct","gcG","858T>G","Ala286Ala",null,"fig|83332.12.peg.1517","Rv1355c","moeY","Molybdopterin biosynthesis protein MoeY","Sensory box/GGDEF family protein","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",1523791,"A","G","7282.46","212.0","1.00","Nonsyn","ctc","cCc","242T>C","Leu81Pro",null,"fig|83332.12.peg.1517","Rv1355c","moeY","Molybdopterin biosynthesis protein MoeY","Sensory box/GGDEF family protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",1526819,"C","A","9385.34","289.0","1.00","Synon","cgg","Agg","103C>A","Arg35Arg",null,"fig|83332.12.peg.1521","Rv1358",null,"Cyclase homology domain / Predicted ATPase / Transcriptional regulator, LuxR family","hypothetical protein","Adenylyl cyclase class-3/4/guanylyl cyclase","synonymous_variantLOW"]
[7739,"NC_000962",1527311,"C","T","3671.72","114.0","0.97","Nonsyn","cgc","Tgc","595C>T","Arg199Cys",null,"fig|83332.12.peg.1521","Rv1358",null,"Cyclase homology domain / Predicted ATPase / Transcriptional regulator, LuxR family","hypothetical protein","Adenylyl cyclase class-3/4/guanylyl cyclase","missense_variantMODERATE"]
["G01498","NC_000962",1531861,"G","T","2629.2","89.0","0.92","Nonsyn","gaa","Taa","514G>T","Glu172*",null,"fig|83332.12.peg.1524","Rv1360",null,"F420-dependent oxidoreductase","hypothetical protein","PPE family protein, SVP subgroup ","stop_gainedLOW"]
["G01491","NC_000962",1533241,"G","C","4915.96","161.0","0.97","Synon","acc","acG","393C>G","Thr131Thr",null,"fig|83332.12.peg.1525","Rv1361c","PPE19","PPE family protein, SVP subgroup ","F420-dependent oxidoreductase","FIG00820195: MCE associated membrane protein","synonymous_variantLOW"]
[54,"NC_000962",1533241,"G","C","2082.59","78.0","1.00","Synon","acc","acG","393C>G","Thr131Thr",null,"fig|83332.12.peg.1525","Rv1361c","PPE19","PPE family protein, SVP subgroup ","F420-dependent oxidoreductase","FIG00820195: MCE associated membrane protein","synonymous_variantLOW"]
["G01222","NC_000962",1536251,"G","T","1331.88","41.0","1.00","Nonsyn","gcg","gAg","1394C>A","Ala465Glu",null,"fig|83332.12.peg.1528","Rv1364c",null,"Serine phosphatase RsbU, regulator of sigma subunit","FIG00821219: MCE associated membrane protein","Anti-sigma B factor antagonist RsbV","missense_variantMODERATE"]
["MP1","NC_000962",1536251,"G","T","6513.77","194.0","1.00","Nonsyn","gcg","gAg","1394C>A","Ala465Glu",null,"fig|83332.12.peg.1528","Rv1364c",null,"Serine phosphatase RsbU, regulator of sigma subunit","FIG00821219: MCE associated membrane protein","Anti-sigma B factor antagonist RsbV","missense_variantMODERATE"]
[64,"NC_000962",1537362,"C","T","1379.12","46.0","0.96","Nonsyn","gat","Aat","283G>A","Asp95Asn",null,"fig|83332.12.peg.1528","Rv1364c",null,"Serine phosphatase RsbU, regulator of sigma subunit","FIG00821219: MCE associated membrane protein","Anti-sigma B factor antagonist RsbV","missense_variantMODERATE"]
[7739,"NC_000962",1537926,"C","T","2465.25","77.0","1.00","Nonsyn","gag","Aag","244G>A","Glu82Lys",null,"fig|83332.12.peg.1529","Rv1365c","rsfA","Anti-sigma B factor antagonist RsbV","Serine phosphatase RsbU, regulator of sigma subunit","GTP pyrophosphokinase (EC 2.7.6.5)","missense_variantMODERATE"]
["G01498","NC_000962",1540141,"T","C","2775.01","90.0","1.00","Nonsyn","atc","Gtc","577A>G","Ile193Val",null,"fig|83332.12.peg.1532","Rv1367c",null,"Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily","hypothetical protein","Lipoprotein LprF, involved in translocation of lipoarabinomannan (LAM) to Mycobacterial outer membrane","missense_variantMODERATE"]
["G01492","NC_000962",1544255,"C","T","10140.2","322.0","1.00","Synon","cgc","cgT","813C>T","Arg271Arg",null,"fig|83332.12.peg.1536","Rv1371",null,"Desaturase-related protein","Insertion element IS6110 (Mycobacterium tuberculosis) transposase","Naringenin-chalcone synthase (EC 2.3.1.74)","synonymous_variantMODERATE"]
["G01222","NC_000962",1546703,"C","T",{"v":771174,"d":"771,174"},"26.0","1.00","Nonsyn","ccg","cTg","692C>T","Pro231Leu",null,"fig|83332.12.peg.1538","Rv1373",null,"Glycolipid sulfotransferase","Naringenin-chalcone synthase (EC 2.3.1.74)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",1546703,"C","T","6675.1","207.0","0.99","Nonsyn","ccg","cTg","692C>T","Pro231Leu",null,"fig|83332.12.peg.1538","Rv1373",null,"Glycolipid sulfotransferase","Naringenin-chalcone synthase (EC 2.3.1.74)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",1546703,"C","T","2079.02","72.0","1.00","Nonsyn","ccg","cTg","692C>T","Pro231Leu",null,"fig|83332.12.peg.1538","Rv1373",null,"Glycolipid sulfotransferase","Naringenin-chalcone synthase (EC 2.3.1.74)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",1547125,"T","C","9029.84","260.0","1.00","Nonsyn","aca","Gca","406A>G","Thr136Ala",null,"fig|83332.12.peg.1539","Rv1374c",null,"hypothetical protein","Glycolipid sulfotransferase","YcaO-like protein","missense_variantMODERATE"]
[58,"NC_000962",1548087,"G","A","4362.85","133.0","0.99","Nonsyn","ggg","Agg","193G>A","Gly65Arg",null,"fig|83332.12.peg.1540","Rv1375",null,"YcaO-like protein","hypothetical protein","FIG029924: hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",1548149,"G","A","2535.1","82.0","0.99","Synon","ccg","ccA","255G>A","Pro85Pro",null,"fig|83332.12.peg.1540","Rv1375",null,"YcaO-like protein","hypothetical protein","FIG029924: hypothetical protein","synonymous_variantMODERATE"]
["G01492","NC_000962",1552547,"G","A","7319.2","240.0","1.00",{"$nulls":10},"CONSERVED 13E12 REPEAT FAMILY PROTEIN","Pyrimidine operon regulatory protein PyrR","intergenic_regionMODIFIER"]
["G01222","NC_000962",1559562,"C","A",{"v":733304,"d":"733,304"},"27.0","0.96","Nonsyn","gcg","gAg","2462C>A","Ala821Glu",null,"fig|83332.12.peg.1549","Rv1384","carB","Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)","Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)","Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)","missense_variantMODERATE"]
["MP1","NC_000962",1559562,"C","A","6021.21","186.0","0.99","Nonsyn","gcg","gAg","2462C>A","Ala821Glu",null,"fig|83332.12.peg.1549","Rv1384","carB","Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)","Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)","Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)","missense_variantMODERATE"]
[64,"NC_000962",1563717,"C","T","1676.4","51.0","1.00",{"$nulls":10},"PPE family protein, PPW subgroup ","Integration host factor MihF","intergenic_regionLOW"]
["MP1","NC_000962",1563717,"C","T","7571.01","218.0","1.00",{"$nulls":10},"PPE family protein, PPW subgroup ","Integration host factor MihF","intergenic_regionMODERATE"]
[64,"NC_000962",1570566,"C","A",{"v":768611,"d":"768,611"},"25.0","1.00","Nonsyn","cgg","cTg","404G>T","Arg135Leu",null,"fig|83332.12.peg.1559","Rv1394c","cyMP132","hypothetical protein","Cyclohexanone monooxygenase (EC 1.14.13.22)","Transcriptional regulator, AraC family","missense_variantMODERATE"]
[7739,"NC_000962",1572851,"T","G",{"v":213527,"d":"213,527"},"10.0","1.00","Nonsyn","aac","aCc","1007A>C","Asn336Thr",null,"fig|83332.12.peg.1561","Rv1396c","PE_PGRS25","PE_PGRS family protein ","Transcriptional regulator, AraC family","toxin VapC10 @ Toxin 1, PIN domain","missense_variantMODERATE"]
["G01498","NC_000962",1573660,"T","G","5575.75","186.0","0.99","Nonsyn","aga","agC","198A>C","Arg66Ser",null,"fig|83332.12.peg.1561","Rv1396c","PE_PGRS25","PE_PGRS family protein ","Transcriptional regulator, AraC family","toxin VapC10 @ Toxin 1, PIN domain","missense_variantMODERATE"]
["G01491","NC_000962",1574206,"T","C","6078.84","196.0","1.00","Nonsyn","gac","gGc","308A>G","AsMP103Gly",null,"fig|83332.12.peg.1562","Rv1397c",null,"toxin VapC10 @ Toxin 1, PIN domain","PE_PGRS family protein ","antitoxin VapB10 @ Antitoxin to Toxin 1, PIN domain","missense_variantMODERATE"]
[54,"NC_000962",1574206,"T","C","10396.3","322.0","0.99","Nonsyn","gac","gGc","308A>G","AsMP103Gly",null,"fig|83332.12.peg.1562","Rv1397c",null,"toxin VapC10 @ Toxin 1, PIN domain","PE_PGRS family protein ","antitoxin VapB10 @ Antitoxin to Toxin 1, PIN domain","missense_variantMODERATE"]
["MP2","NC_000962",1582051,"T","C","5430.09","167.0","1.00",{"$nulls":10},"SAM-dependent methyltransferase","Methionyl-tRNA formyltransferase (EC 2.1.2.9)","intergenic_regionMODIFIER"]
[58,"NC_000962",1584379,"A","C",{"v":212559,"d":"212,559"},"8.0","1.00","Nonsyn","atc","Ctc","1279A>C","Ile427Leu",null,"fig|83332.12.peg.1572","Rv1407","fmu","16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176)","Methionyl-tRNA formyltransferase (EC 2.1.2.9)","Ribulose-phosphate 3-epimerase (EC 5.1.3.1)","missense_variantMODERATE"]
[64,"NC_000962",1584379,"A","C",{"v":415355,"d":"415,355"},"19.0","0.76","Nonsyn","atc","Ctc","1279A>C","Ile427Leu",null,"fig|83332.12.peg.1572","Rv1407","fmu","16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176)","Methionyl-tRNA formyltransferase (EC 2.1.2.9)","Ribulose-phosphate 3-epimerase (EC 5.1.3.1)","missense_variantMODERATE"]
[7739,"NC_000962",1585404,"G","A","2587.26","86.0","0.98","Nonsyn","gcc","Acc","211G>A","Ala71Thr",null,"fig|83332.12.peg.1574","Rv1409","ribG","Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)","Ribulose-phosphate 3-epimerase (EC 5.1.3.1)","Multidrug efflux pump P55","missense_variantMODERATE"]
["G01498","NC_000962",1585574,"G","T","1690.37","60.0","0.94","Nonsyn","cag","caT","381G>T","Gln127His",null,"fig|83332.12.peg.1574","Rv1409","ribG","Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)","Ribulose-phosphate 3-epimerase (EC 5.1.3.1)","Multidrug efflux pump P55","missense_variantMODERATE"]
["MP1","NC_000962",1585574,"G","T","3344.92","105.0","1.00","Nonsyn","cag","caT","381G>T","Gln127His",null,"fig|83332.12.peg.1574","Rv1409","ribG","Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)","Ribulose-phosphate 3-epimerase (EC 5.1.3.1)","Multidrug efflux pump P55","missense_variantMODERATE"]
["G01222","NC_000962",1600685,"C","T","990.5","33.0","1.00","Nonsyn","ccc","cTc","968C>T","Pro323Leu",null,"fig|83332.12.peg.1590","Rv1425",null,"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","hypothetical protein","Esterase LipO","missense_variantMODERATE"]
["MP1","NC_000962",1600685,"C","T","6177.08","189.0","1.00","Nonsyn","ccc","cTc","968C>T","Pro323Leu",null,"fig|83332.12.peg.1590","Rv1425",null,"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","hypothetical protein","Esterase LipO","missense_variantMODERATE"]
[64,"NC_000962",1608276,"A","C",{"v":762999,"d":"762,999"},"25.0","0.96","Nonsyn","aac","aCc","194A>C","Asn65Thr",null,"fig|83332.12.peg.1596","Rv1431",null,"putative membrane protein","PE family protein ","Phytoene dehydrogenase and related proteins","missense_variantLOW"]
[7739,"NC_000962",1611283,"T","C","3173.93","97.0","1.00",{"$nulls":10},"Phytoene dehydrogenase and related proteins","L,D-transpeptidase","intergenic_regionMODERATE"]
[58,"NC_000962",1611283,"T","C","1807.14","58.0","0.98",{"$nulls":10},"Phytoene dehydrogenase and related proteins","L,D-transpeptidase","intergenic_regionMODIFIER"]
[7011,"NC_000962",1612178,"C","T","2504.67","78.0","1.00","Synon","ctg","Ttg","745C>T","Leu249Leu",null,"fig|83332.12.peg.1598","Rv1433",null,"L,D-transpeptidase","Phytoene dehydrogenase and related proteins","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",1613035,"T","C","11522.5","380.0","1.00",{"$nulls":10},"hypothetical protein","NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)","intergenic_regionMODERATE"]
["G01222","NC_000962",1618978,"T","C",{"v":201107,"d":"201,107"},"8.0","1.00","Nonsyn","gat","gGt","680A>G","AsMP227Gly",null,"fig|83332.12.peg.1607","Rv1441c","PE_PGRS26","PE_PGRS family protein ","Protein translocase membrane subunit SecG","Biotin sulfoxide reductase (EC 1.-.-.-) / Free methionine-(S)-sulfoxide reductase","missense_variantMODERATE"]
["MP1","NC_000962",1618978,"T","C",{"v":247417,"d":"247,417"},"8.0","1.00","Nonsyn","gat","gGt","680A>G","AsMP227Gly",null,"fig|83332.12.peg.1607","Rv1441c","PE_PGRS26","PE_PGRS family protein ","Protein translocase membrane subunit SecG","Biotin sulfoxide reductase (EC 1.-.-.-) / Free methionine-(S)-sulfoxide reductase","missense_variantMODERATE"]
[64,"NC_000962",1624791,"C","G",{"v":725371,"d":"725,371"},"25.0","1.00","Nonsyn","cga","cCa","575G>C","Arg192Pro",null,"fig|83332.12.peg.1615","Rv1446c","opcA","OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial","6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)","missense_variantLOW"]
["G01498","NC_000962",1626537,"C","T","3088.17","100.0","0.98","Synon","ctg","ctA","426G>A","Leu142Leu",null,"fig|83332.12.peg.1616","Rv1447c","zwf2","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)","OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial","Transaldolase (EC 2.2.1.2)","synonymous_variantLOW"]
[7011,"NC_000962",1627351,"T","C","3235.95","102.0","0.99","Nonsyn","acc","Gcc","730A>G","Thr244Ala",null,"fig|83332.12.peg.1617","Rv1448c","tal","Transaldolase (EC 2.2.1.2)","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)","Transketolase (EC 2.2.1.1)","missense_variantMODERATE"]
[7739,"NC_000962",1627351,"T","C","2322.82","76.0","0.97","Nonsyn","acc","Gcc","730A>G","Thr244Ala",null,"fig|83332.12.peg.1617","Rv1448c","tal","Transaldolase (EC 2.2.1.2)","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)","Transketolase (EC 2.2.1.1)","missense_variantMODERATE"]
["G01498","NC_000962",1628586,"G","A","2474.54","86.0","0.89","Synon","gcc","gcT","1614C>T","Ala538Ala",null,"fig|83332.12.peg.1618","Rv1449c","tkt","Transketolase (EC 2.2.1.1)","Transaldolase (EC 2.2.1.2)","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",1630148,"A","C","5792.19","180.0","0.99","Nonsyn","tac","Gac","52T>G","Tyr18Asp",null,"fig|83332.12.peg.1618","Rv1449c","tkt","Transketolase (EC 2.2.1.1)","Transaldolase (EC 2.2.1.2)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",1630148,"A","C","2883.31","94.0","0.99","Nonsyn","tac","Gac","52T>G","Tyr18Asp",null,"fig|83332.12.peg.1618","Rv1449c","tkt","Transketolase (EC 2.2.1.1)","Transaldolase (EC 2.2.1.2)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",1635230,"G","A","6568.41","195.0","1.00","Nonsyn","gcc","Acc","154G>A","Ala52Thr",null,"fig|83332.12.peg.1622","Rv1451","ctaB","Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB","PE_PGRS family protein ","PE_PGRS family protein ","missense_variantMODERATE"]
[58,"NC_000962",1636369,"GCCCCCCG","GCCCCCCCG",{"v":985846,"d":"985,846"},"39.0","0.87","Insertion","ctcggggggctc","ctCGGGGGGGCtc","1854_1855insG","Leu618_Gly619fs","yes","fig|83332.12.peg.1623","Rv1452c","PE_PGRS28","PE_PGRS family protein ","Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB","Possible regulatory protein Trx","frameshift_variantLOW"]
[7011,"NC_000962",1638364,"C","T",{"v":387169,"d":"387,169"},"24.0","0.96",{"$nulls":10},"PE_PGRS family protein ","Possible regulatory protein Trx","intergenic_regionMODIFIER"]
["G01492","NC_000962",1639418,"A","G","11260.8","358.0","0.99","Synon","cta","ctG","1038A>G","Leu346Leu",null,"fig|83332.12.peg.1624","Rv1453",null,"Possible regulatory protein Trx","PE_PGRS family protein ","Quinone oxidoreductase (EC 1.6.5.5)","synonymous_variantLOW"]
["G01498","NC_000962",1639418,"A","G","5757.43","192.0","1.00","Synon","cta","ctG","1038A>G","Leu346Leu",null,"fig|83332.12.peg.1624","Rv1453",null,"Possible regulatory protein Trx","PE_PGRS family protein ","Quinone oxidoreductase (EC 1.6.5.5)","synonymous_variantLOW"]
["MP2","NC_000962",1639594,"C","A","6728.65","228.0","0.99","Nonsyn","cca","cAa","1214C>A","Pro405Gln",null,"fig|83332.12.peg.1624","Rv1453",null,"Possible regulatory protein Trx","PE_PGRS family protein ","Quinone oxidoreductase (EC 1.6.5.5)","missense_variantMODERATE"]
["G01222","NC_000962",1639643,"T","C",{"v":590863,"d":"590,863"},"28.0","1.00","Synon","cgt","cgC","1263T>C","Arg421Arg",null,"fig|83332.12.peg.1624","Rv1453",null,"Possible regulatory protein Trx","PE_PGRS family protein ","Quinone oxidoreductase (EC 1.6.5.5)","synonymous_variantLOW"]
["MP1","NC_000962",1639643,"T","C","7962.05","241.0","0.99","Synon","cgt","cgC","1263T>C","Arg421Arg",null,"fig|83332.12.peg.1624","Rv1453",null,"Possible regulatory protein Trx","PE_PGRS family protein ","Quinone oxidoreductase (EC 1.6.5.5)","synonymous_variantLOW"]
[64,"NC_000962",1640442,"C","T",{"v":911541,"d":"911,541"},"30.0","1.00","Synon","ggg","ggA","219G>A","Gly73Gly",null,"fig|83332.12.peg.1625","Rv1454c","qor","Quinone oxidoreductase (EC 1.6.5.5)","Possible regulatory protein Trx","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",1645802,"T","C","2767.04","92.0","0.99","Nonsyn","aaa","Gaa","337A>G","Lys113Glu",null,"fig|83332.12.peg.1630","Rv1459c",null,"Integral membrane protein Rv1459c","Efflux ABC transporter, ATP-binding protein Rv1458c","Iron-sulfur cluster regulator SufR","missense_variantMODERATE"]
["G01498","NC_000962",1646982,"C","T",{"v":488855,"d":"488,855"},"19.0","0.90","Nonsyn","gcg","gTg","656C>T","Ala219Val",null,"fig|83332.12.peg.1631","Rv1460",null,"Iron-sulfur cluster regulator SufR","Integral membrane protein Rv1459c","Iron-sulfur cluster assembly protein SufB","missense_variantMODERATE"]
["G01491","NC_000962",1648564,"C","T","3752.17","126.0","0.96","Synon","ctg","Ttg","1576C>T","Leu526Leu",null,"fig|83332.12.peg.1632","Rv1461",null,"Iron-sulfur cluster assembly protein SufB","Iron-sulfur cluster regulator SufR","Iron-sulfur cluster assembly protein SufD","synonymous_variantLOW"]
["G01492","NC_000962",1648564,"C","T","9004.09","293.0","0.94","Synon","ctg","Ttg","1576C>T","Leu526Leu",null,"fig|83332.12.peg.1632","Rv1461",null,"Iron-sulfur cluster assembly protein SufB","Iron-sulfur cluster regulator SufR","Iron-sulfur cluster assembly protein SufD","synonymous_variantLOW"]
["G01222","NC_000962",1650072,"A","G",{"v":548712,"d":"548,712"},"21.0","1.00","Nonsyn","aac","Gac","547A>G","Asn183Asp",null,"fig|83332.12.peg.1633","Rv1462",null,"Iron-sulfur cluster assembly protein SufD","Iron-sulfur cluster assembly protein SufB","Iron-sulfur cluster assembly ATPase protein SufC","missense_variantMODERATE"]
["MP1","NC_000962",1650072,"A","G","7980.53","242.0","1.00","Nonsyn","aac","Gac","547A>G","Asn183Asp",null,"fig|83332.12.peg.1633","Rv1462",null,"Iron-sulfur cluster assembly protein SufD","Iron-sulfur cluster assembly protein SufB","Iron-sulfur cluster assembly ATPase protein SufC","missense_variantMODERATE"]
[64,"NC_000962",1650257,"GC","AT",{"v":920062,"d":"920,062"},"5.0","0.62","Synon","cggctg","cgATtg","732GC>AT","ArgLeu244ArgLeu",null,"fig|83332.12.peg.1633","Rv1462",null,"Iron-sulfur cluster assembly protein SufD","Iron-sulfur cluster assembly protein SufB","Iron-sulfur cluster assembly ATPase protein SufC","synonymous_variantMODERATE"]
[7011,"NC_000962",1659994,"C","T","1953.49","63.0","0.98","Nonsyn","ccg","Tcg","178C>T","Pro60Ser",null,"fig|83332.12.peg.1643","Rv1472","echA12","Enoyl-CoA hydratase (EC 4.2.1.17)","Thioredoxin","Bis-ABC ATPase SCO1840","missense_variantLOW"]
[7011,"NC_000962",1662719,"G","C","1229.47","39.0","0.97","Synon","gcc","gcG","486C>G","Ala162Ala",null,"fig|83332.12.peg.1646","Rv1474c",null,"Transcriptional regulator, AcrR family","hypothetical protein","Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)","synonymous_variantMODERATE"]
["G01492","NC_000962",1671329,"C","T","10024.8","335.0","0.96","Nonsyn","gcc","gTc","917C>T","Ala306Val",null,"fig|83332.12.peg.1652","Rv1480",null,"hypothetical protein PA3071","MoxR-like ATPase in aerotolerance operon","Aerotolerance protein BatA","missense_variantMODERATE"]
["G01222","NC_000962",1674520,"C","T","607.98","19.0","1.00","Nonsyn","ccg","Tcg","319C>T","Pro107Ser",null,"fig|83332.12.peg.1656","Rv1484","inhA","Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), FadG","Coproporphyrin ferrochelatase (EC 4.99.1.9)","missense_variantMODERATE"]
["G01491","NC_000962",1674520,"C","T","3601.8","120.0","0.96","Nonsyn","ccg","Tcg","319C>T","Pro107Ser",null,"fig|83332.12.peg.1656","Rv1484","inhA","Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), FadG","Coproporphyrin ferrochelatase (EC 4.99.1.9)","missense_variantMODERATE"]
[54,"NC_000962",1674520,"C","T","1870.33","59.0","1.00","Nonsyn","ccg","Tcg","319C>T","Pro107Ser",null,"fig|83332.12.peg.1656","Rv1484","inhA","Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), FadG","Coproporphyrin ferrochelatase (EC 4.99.1.9)","missense_variantMODERATE"]
["MP2","NC_000962",1676290,"C","A","6122.25","181.0","0.99","Nonsyn","aag","aaT","636G>T","Lys212Asn",null,"fig|83332.12.peg.1658","Rv1486c",null,"hypothetical protein","Coproporphyrin ferrochelatase (EC 4.99.1.9)","Putative activity regulator of membrane protease YbbK","missense_variantMODIFIER"]
[58,"NC_000962",1688300,"T","C",{"v":540985,"d":"540,985"},"20.0","0.87","Synon","ttt","ttC","291T>C","Phe97Phe",null,"fig|83332.12.peg.1671","Rv1497","lipL","Esterase LipL","putative periplasmic protein kinase ArgK and related GTPases of G3E family","SAM-dependent methyltransferase Rv1498c","synonymous_variantLOW"]
[7011,"NC_000962",1689349,"C","T","2590.48","87.0","1.00","Nonsyn","cgc","cAc","572G>A","Arg191His",null,"fig|83332.12.peg.1672","Rv1498c",null,"SAM-dependent methyltransferase Rv1498c","Esterase LipL","Dodecin, a flavin storage/sequestration protein","missense_variantMODERATE"]
["G01492","NC_000962",1690345,"A","G","7012.49","218.0","0.99","Nonsyn","atg","aCg","2T>C","Met1?",null,"fig|83332.12.peg.1673","Rv1498A",null,"Dodecin, a flavin storage/sequestration protein","SAM-dependent methyltransferase Rv1498c","hypothetical protein","start_lostHIGH"]
["G01222","NC_000962",1692141,"A","C","1851.47","57.0","1.00","Synon","ata","atC","252A>C","Ile84Ile",null,"fig|83332.12.peg.1676","Rv1501",null,"hypothetical protein","Glycosyl transferase, family 2","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",1692141,"A","C","8713.0","252.0","1.00","Synon","ata","atC","252A>C","Ile84Ile",null,"fig|83332.12.peg.1676","Rv1501",null,"hypothetical protein","Glycosyl transferase, family 2","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",1693561,"A","G","1643.09","51.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",1693561,"A","G","7476.46","228.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",1694199,"C","T","2968.81","89.0","1.00",{"$nulls":10},"dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","intergenic_regionMODIFIER"]
[7739,"NC_000962",1694300,"C","A","3070.37","100.0","0.99",{"$nulls":10},"dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","intergenic_regionMODIFIER"]
["G01498","NC_000962",1694432,"G","C","1332.01","47.0","0.90",{"$nulls":10},"dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","intergenic_regionMODIFIER"]
["G01491","NC_000962",1694547,"A","C","2937.06","92.0","1.00","Nonsyn","taa","Gaa","562T>G","Ter188Gluext*?",null,"fig|83332.12.peg.1679","Rv1504c",null,"dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","Putative transferase","stop_lostHIGH"]
[54,"NC_000962",1694547,"A","C","16844.3","510.0","0.98","Nonsyn","taa","Gaa","562T>G","Ter188Gluext*?",null,"fig|83332.12.peg.1679","Rv1504c",null,"dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","Putative transferase","stop_lostHIGH"]
["MP2","NC_000962",1695674,"G","A","9641.73","283.0","1.00","Synon","tac","taT","126C>T","Tyr42Tyr",null,"fig|83332.12.peg.1680","Rv1505c",null,"Putative transferase","dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",1695674,"G","A","10022.7","290.0","1.00","Synon","tac","taT","126C>T","Tyr42Tyr",null,"fig|83332.12.peg.1680","Rv1505c",null,"Putative transferase","dTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59)","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",1696423,"C","T","1599.73","53.0","1.00","Synon","gcg","gcA","152G>A","Arg51Gln",null,"fig|83332.12.peg.1681","Rv1506c",null,"hypothetical protein","Putative transferase","hypothetical protein","missense_variantHIGH"]
["MP1","NC_000962",1696931,"T","C","8178.57","240.0","1.00","Synon","gaa","gaG","492A>G","Glu164Glu",null,"fig|83332.12.peg.1683","Rv1507c",null,"hypothetical protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",1698720,"A","G","2226.93","68.0","0.99","Nonsyn","atc","aCc","935T>C","Ile312Thr",null,"fig|83332.12.peg.1684","Rv1508c",null,"hypothetical protein","hypothetical protein","SAM-dependent methyltransferase","missense_variantMODERATE"]
["G01492","NC_000962",1698911,"G","A","8716.79","287.0","1.00","Synon","ggc","ggT","744C>T","Gly248Gly",null,"fig|83332.12.peg.1684","Rv1508c",null,"hypothetical protein","hypothetical protein","SAM-dependent methyltransferase","synonymous_variantLOW"]
["G01222","NC_000962",1699849,"G","A",{"v":814424,"d":"814,424"},"26.0","1.00",{"$nulls":10},"hypothetical protein","SAM-dependent methyltransferase","intergenic_regionMODIFIER"]
["MP1","NC_000962",1699849,"G","A","5979.76","174.0","1.00",{"$nulls":10},"hypothetical protein","SAM-dependent methyltransferase","intergenic_regionHIGH"]
[64,"NC_000962",1706119,"T","C","7036.2","221.0","0.95","Synon","tca","tcG","477A>G","Ser159Ser",null,"fig|83332.12.peg.1690","Rv1514c",null,"hypothetical protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",1706119,"T","C","6686.35","195.0","1.00","Synon","tca","tcG","477A>G","Ser159Ser",null,"fig|83332.12.peg.1690","Rv1514c",null,"hypothetical protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",1706746,"C","A","5195.87","158.0","1.00","Nonsyn","gtc","Ttc","742G>T","Val248Phe",null,"fig|83332.12.peg.1691","Rv1515c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",1709432,"C","T","2992.3","91.0","1.00","Nonsyn","ctc","Ttc","541C>T","Leu181Phe",null,"fig|83332.12.peg.1694","Rv1517",null,"hypothetical protein","hypothetical protein","Glycosyltransferase PglI (EC 2.4.1.-)","missense_variantMODERATE"]
["G01492","NC_000962",1712419,"A","C","7230.73","234.0","0.96","Nonsyn","act","Cct","118A>C","Thr40Pro",null,"fig|83332.12.peg.1699","Rv1521","fadD25","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD25","hypothetical protein","Transmembrane transport protein MmpL8/MmpL10/MmpL12","missense_variantMODERATE"]
["G01222","NC_000962",1712522,"G","T",{"v":954462,"d":"954,462"},"30.0","1.00","Nonsyn","agc","aTc","221G>T","Ser74Ile",null,"fig|83332.12.peg.1699","Rv1521","fadD25","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD25","hypothetical protein","Transmembrane transport protein MmpL8/MmpL10/MmpL12","missense_variantMODERATE"]
[7739,"NC_000962",1712522,"G","T","2933.3","95.0","1.00","Nonsyn","agc","aTc","221G>T","Ser74Ile",null,"fig|83332.12.peg.1699","Rv1521","fadD25","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD25","hypothetical protein","Transmembrane transport protein MmpL8/MmpL10/MmpL12","missense_variantMODERATE"]
["MP2","NC_000962",1713192,"A","G","8088.79","245.0","1.00","Synon","gta","gtG","891A>G","Val297Val",null,"fig|83332.12.peg.1699","Rv1521","fadD25","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD25","hypothetical protein","Transmembrane transport protein MmpL8/MmpL10/MmpL12","synonymous_variantLOW"]
[58,"NC_000962",1714290,"G","T","2871.67","90.0","1.00","Nonsyn","tcg","tAg","3323C>A","Ser1108*",null,"fig|83332.12.peg.1700","Rv1522c","mmpL12","Transmembrane transport protein MmpL8/MmpL10/MmpL12","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD25","hypothetical protein","stop_gainedHIGH"]
[64,"NC_000962",1714290,"G","T","3787.15","118.0","0.98","Nonsyn","tcg","tAg","3323C>A","Ser1108*",null,"fig|83332.12.peg.1700","Rv1522c","mmpL12","Transmembrane transport protein MmpL8/MmpL10/MmpL12","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD25","hypothetical protein","stop_gainedHIGH"]
[7739,"NC_000962",1716472,"A","G","2598.0","86.0","1.00","Nonsyn","tcc","Ccc","1141T>C","Ser381Pro",null,"fig|83332.12.peg.1700","Rv1522c","mmpL12","Transmembrane transport protein MmpL8/MmpL10/MmpL12","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD25","hypothetical protein","missense_variantLOW"]
["G01498","NC_000962",1721814,"C","T","2781.27","93.0","0.94","Nonsyn","gcc","Acc","247G>A","Ala83Thr",null,"fig|83332.12.peg.1705","Rv1526c",null,"hypothetical protein","POSSIBLE RHAMNOSYL TRANSFERASE WBBL2","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","missense_variantMODERATE"]
["G01491","NC_000962",1723988,"G","A","7735.55","247.0","0.98","Synon","gac","gaT","4359C>T","AsMP1453Asp",null,"fig|83332.12.peg.1706","Rv1527c","pks5","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",1723988,"G","A","1200.23","38.0","1.00","Synon","gac","gaT","4359C>T","AsMP1453Asp",null,"fig|83332.12.peg.1706","Rv1527c","pks5","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",1725605,"C","T","7080.16","210.0","0.99","Synon","ctg","ctA","2742G>A","Leu914Leu",null,"fig|83332.12.peg.1706","Rv1527c","pks5","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","hypothetical protein","hypothetical protein","synonymous_variantMODERATE"]
[58,"NC_000962",1728837,"A","G","4190.31","123.0","0.99",{"$nulls":10},"Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",1738645,"G","T","3878.75","119.0","1.00","Synon","gcg","gcT","2127G>T","Ala709Ala",null,"fig|83332.12.peg.1716","Rv1536","ileS","Isoleucyl-tRNA synthetase (EC 6.1.1.5)","hypothetical protein","DNA polymerase IV (EC 2.7.7.7)","synonymous_variantLOW"]
[54,"NC_000962",1738645,"G","T","2062.07","64.0","0.98","Synon","gcg","gcT","2127G>T","Ala709Ala",null,"fig|83332.12.peg.1716","Rv1536","ileS","Isoleucyl-tRNA synthetase (EC 6.1.1.5)","hypothetical protein","DNA polymerase IV (EC 2.7.7.7)","synonymous_variantLOW"]
[7011,"NC_000962",1742583,"C","T","2049.45","70.0","1.00","Nonsyn","ccg","Tcg","238C>T","Pro80Ser",null,"fig|83332.12.peg.1719","Rv1539","lspA","Lipoprotein signal peptidase (EC 3.4.23.36)","L-asparaginase (EC 3.5.1.1)","LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23)","missense_variantMODERATE"]
["G01492","NC_000962",1752561,"T","C","6566.54","216.0","1.00","Nonsyn","gac","gGc","800A>G","AsMP267Gly",null,"fig|83332.12.peg.1728","Rv1548c","PPE21","PPE family protein, MPTR subgroup ","DNA polymerase III alpha subunit (EC 2.7.7.7)","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD11","missense_variantMODERATE"]
["G01222","NC_000962",1753519,"GCC","GCCC",{"v":383742,"d":"383,742"},"17.0","0.85","Insertion",{"$nulls":9},"PPE family protein, MPTR subgroup ","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD11","intergenic_regionMODIFIER"]
["MP1","NC_000962",1753519,"GCC","GCCC","3167.39","114.0","0.83","Insertion",{"$nulls":9},"PPE family protein, MPTR subgroup ","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD11","intergenic_regionMODIFIER"]
[64,"NC_000962",1753561,"C","T","2265.23","67.0","1.00",{"$nulls":10},"PPE family protein, MPTR subgroup ","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD11","intergenic_regionHIGH"]
[7739,"NC_000962",1759252,"G","T","2661.22","83.0","1.00","Synon","tcg","tcT","1317G>T","Ser439Ser",null,"fig|83332.12.peg.1733","Rv1552","frdA","Fumarate reductase flavoprotein subunit (EC 1.3.5.4)","hypothetical protein","Fumarate reductase iron-sulfur protein (EC 1.3.5.4)","synonymous_variantLOW"]
["G01498","NC_000962",1760292,"A","G","1335.11","48.0","1.00","Nonsyn","atg","Gtg","52A>G","Met18Val",null,"fig|83332.12.peg.1735","Rv1554","frdC","Fumarate reductase subunit C","Fumarate reductase iron-sulfur protein (EC 1.3.5.4)","Fumarate reductase subunit D","missense_variantMODERATE"]
[7011,"NC_000962",1760292,"A","G","2442.33","78.0","1.00","Nonsyn","atg","Gtg","52A>G","Met18Val",null,"fig|83332.12.peg.1735","Rv1554","frdC","Fumarate reductase subunit C","Fumarate reductase iron-sulfur protein (EC 1.3.5.4)","Fumarate reductase subunit D","missense_variantMODERATE"]
["G01492","NC_000962",1760857,"G","T","9710.01","318.0","0.97","Synon","gtg","gtT","306G>T","Val102Val",null,"fig|83332.12.peg.1736","Rv1555","frdD","Fumarate reductase subunit D","Fumarate reductase subunit C","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
["G01222","NC_000962",1760923,"T","C",{"v":822139,"d":"822,139"},"28.0","1.00","Synon","act","acC","372T>C","Thr124Thr",null,"fig|83332.12.peg.1736","Rv1555","frdD","Fumarate reductase subunit D","Fumarate reductase subunit C","Transcriptional regulator, AcrR family","synonymous_variantMODERATE"]
[58,"NC_000962",1760923,"T","C","3419.16","105.0","1.00","Synon","act","acC","372T>C","Thr124Thr",null,"fig|83332.12.peg.1736","Rv1555","frdD","Fumarate reductase subunit D","Fumarate reductase subunit C","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
["MP2","NC_000962",1768141,"A","G","6782.97","198.0","1.00","Nonsyn","gtc","gCc","1292T>C","Val431Ala",null,"fig|83332.12.peg.1744","Rv1563c","treY","Malto-oligosyltrehalose synthase (EC 5.4.99.15)","Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)","Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196)","missense_variantMODERATE"]
[58,"NC_000962",1775167,"G","A","4057.03","126.0","1.00",{"$nulls":10},"Uncharacterized protein Rv1567c","Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)","intergenic_regionMODIFIER"]
[7011,"NC_000962",1778430,"T","C","1669.11","63.0","0.97","Nonsyn","atg","aCg","572T>C","Met191Thr",null,"fig|83332.12.peg.1751","Rv1570","bioD","Dethiobiotin synthase BioD (EC 6.3.3.3)","8-amino-7-oxononanoate synthase (EC 2.3.1.47)","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",1792777,"TT","CC","11761.2","387.0","0.99","Nonsyn","gaaatt","gaGGtt","963AA>GG","GluIle321GluVal",null,"fig|83332.12.peg.1774","Rv1592c",null,"Lipase 1 (EC 3.1.1.3)","Putative transmembrane protein","Nudix-related transcriptional regulator NrtR","missense_variantMODERATE"]
["G01498","NC_000962",1792777,"TT","CC","2363.03","79.0","1.00","Nonsyn","gaaatt","gaGGtt","963AA>GG","GluIle321GluVal",null,"fig|83332.12.peg.1774","Rv1592c",null,"Lipase 1 (EC 3.1.1.3)","Putative transmembrane protein","Nudix-related transcriptional regulator NrtR","missense_variantMODERATE"]
["G01491","NC_000962",1797577,"A","G","5185.73","159.0","0.99","Nonsyn","aac","Gac","190A>G","Asn64Asp",null,"fig|83332.12.peg.1778","Rv1596","nadC","Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)","L-aspartate oxidase (EC 1.4.3.16)","SAM-dependent methyltransferase","missense_variantMODERATE"]
[54,"NC_000962",1797577,"A","G","5466.66","177.0","0.97","Nonsyn","aac","Gac","190A>G","Asn64Asp",null,"fig|83332.12.peg.1778","Rv1596","nadC","Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)","L-aspartate oxidase (EC 1.4.3.16)","SAM-dependent methyltransferase","missense_variantMODERATE"]
["MP2","NC_000962",1798355,"G","A","4436.32","130.0","1.00","Nonsyn","ggt","gAt","38G>A","Gly13Asp",null,"fig|83332.12.peg.1779","Rv1597",null,"SAM-dependent methyltransferase","Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",1800374,"T","C","1584.5","50.0","0.96","Synon","att","atC","810T>C","Ile270Ile",null,"fig|83332.12.peg.1781","Rv1599","hisD","Histidinol dehydrogenase (EC 1.1.1.23)","hypothetical protein","Histidinol-phosphate aminotransferase (EC 2.6.1.9)","synonymous_variantLOW"]
[7011,"NC_000962",1803265,"G","A","2990.77","90.0","1.00","Nonsyn","agc","aAc","602G>A","Ser201Asn",null,"fig|83332.12.peg.1784","Rv1602","hisH","Imidazole glycerol phosphate synthase amidotransferase subunit HisH","Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)","Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) @ Acting phosphoribosylanthranilate isomerase (EC 5.3.1.24)","missense_variantMODERATE"]
["G01222","NC_000962",1804409,"C","A",{"v":387281,"d":"387,281"},"15.0","1.00","Nonsyn","cca","cAa","371C>A","Pro124Gln",null,"fig|83332.12.peg.1786","Rv1604","impA","Histidinol-phosphatase [alternative form] (EC 3.1.3.15)","Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) @ Acting phosphoribosylanthranilate isomerase (EC 5.3.1.24)","Imidazole glycerol phosphate synthase cyclase subunit","missense_variantMODERATE"]
["G01491","NC_000962",1805214,"C","T","5841.14","185.0","1.00","Nonsyn","ccg","cTg","362C>T","Pro121Leu",null,"fig|83332.12.peg.1787","Rv1605","hisF","Imidazole glycerol phosphate synthase cyclase subunit","Histidinol-phosphatase [alternative form] (EC 3.1.3.15)","Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)","missense_variantMODERATE"]
["G01492","NC_000962",1805214,"C","T","10655.4","338.0","0.98","Nonsyn","ccg","cTg","362C>T","Pro121Leu",null,"fig|83332.12.peg.1787","Rv1605","hisF","Imidazole glycerol phosphate synthase cyclase subunit","Histidinol-phosphatase [alternative form] (EC 3.1.3.15)","Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)","missense_variantMODERATE"]
["G01222","NC_000962",1809532,"G","A",{"v":695647,"d":"695,647"},"24.0","1.00","Synon","ggg","ggA","42G>A","Gly14Gly",null,"fig|83332.12.peg.1792","Rv1610",null,"Tryptophan-associated membrane protein","Anthranilate synthase, aminase component (EC 4.1.3.27)","Indole-3-glycerol phosphate synthase (EC 4.1.1.48)","synonymous_variantMODERATE"]
["MP1","NC_000962",1809532,"G","A","4606.32","151.0","0.99","Synon","ggg","ggA","42G>A","Gly14Gly",null,"fig|83332.12.peg.1792","Rv1610",null,"Tryptophan-associated membrane protein","Anthranilate synthase, aminase component (EC 4.1.3.27)","Indole-3-glycerol phosphate synthase (EC 4.1.1.48)","synonymous_variantMODERATE"]
[64,"NC_000962",1817976,"A","T","2129.37","70.0","0.97","Nonsyn","cac","cTc","344A>T","His115Leu",null,"fig|83332.12.peg.1802","Rv1618","tesB1","Acyl-CoA thioesterase II (EC 3.1.2.-)","Pyruvate kinase (EC 2.7.1.40)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",1825337,"G","A","1815.72","61.0","0.98","Nonsyn","acc","aTc","551C>T","Thr184Ile",null,"fig|83332.12.peg.1807","Rv1623c","cydA","Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)","Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)","putative membrane protein","missense_variantMODERATE"]
["G01498","NC_000962",1826054,"T","C","1714.13","60.0","1.00","Nonsyn","aca","Gca","475A>G","Thr159Ala",null,"fig|83332.12.peg.1808","Rv1624c",null,"putative membrane protein","Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)","Adenylate cyclase (EC 4.6.1.1)","missense_variantMODERATE"]
["G01491","NC_000962",1827805,"C","T","3404.84","108.0","0.98","Synon","gtg","gtA","3G>A","Val1Val",null,"fig|83332.12.peg.1809","Rv1625c","cya","Adenylate cyclase (EC 4.6.1.1)","putative membrane protein","tRNA-Leu-CAA","synonymous_variantLOW"]
[54,"NC_000962",1827805,"C","T","1791.87","61.0","0.98","Synon","gtg","gtA","3G>A","Val1Val",null,"fig|83332.12.peg.1809","Rv1625c","cya","Adenylate cyclase (EC 4.6.1.1)","putative membrane protein","tRNA-Leu-CAA","synonymous_variantLOW"]
["G01222","NC_000962",1828389,"C","T",{"v":533886,"d":"533,886"},"17.0","1.00","Synon","cgc","cgT","210C>T","Arg70Arg",null,"fig|83332.12.peg.1810","Rv1626",null,"Two-component transcriptional response regulator PdtaR, LuxR family","tRNA-Leu-CAA","Probable nonspecific lipid-transfer protein","synonymous_variantMODERATE"]
["G01222","NC_000962",1836286,"G","C",{"v":947068,"d":"947,068"},"32.0","1.00","Synon","gcg","gcC","87G>C","Ala29Ala",null,"fig|83332.12.peg.1816",null,null,"hypothetical protein","Dephospho-CoA kinase (EC 2.7.1.24)","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",1836286,"G","C","5815.65","169.0","0.99","Synon","gcg","gcC","87G>C","Ala29Ala",null,"fig|83332.12.peg.1816",null,null,"hypothetical protein","Dephospho-CoA kinase (EC 2.7.1.24)","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",1839260,"T","G",{"v":515308,"d":"515,308"},"34.0","0.62","Synon","ctt","ctG","93T>G","Leu31Leu",null,"fig|83332.12.peg.1819","Rv1634",null,"MFS-type transporter Rv1634 family ","Excinuclease ABC subunit B","Membrane protein","synonymous_variantLOW"]
[7011,"NC_000962",1839759,"G","C","2080.03","72.0","1.00","Nonsyn","ggg","Cgg","592G>C","Gly198Arg",null,"fig|83332.12.peg.1819","Rv1634",null,"MFS-type transporter Rv1634 family ","Excinuclease ABC subunit B","Membrane protein","missense_variantMODERATE"]
["G01492","NC_000962",1844741,"C","T","10290.0","341.0","0.98","Nonsyn","gcg","gTg","1001C>T","Ala334Val",null,"fig|83332.12.peg.1824","Rv1638","uvrA","Excinuclease ABC subunit A","MBL-fold metallo-hydrolase superfamily","FIG00820127: hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",1847919,"C","G",{"v":959649,"d":"959,649"},"32.0","0.94","Synon","acg","acC","522G>C","Thr174Thr",null,"fig|83332.12.peg.1826","Rv1639c",null,"hypothetical protein Rv1639c","FIG00820127: hypothetical protein","L-O-lysylphosphatidylglycerol synthase (EC 2.3.2.3) / Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), L-O-lysylphosphatidylglycerol synthetase specific","synonymous_variantLOW"]
["MP1","NC_000962",1847919,"C","G","5464.41","162.0","1.00","Synon","acg","acC","522G>C","Thr174Thr",null,"fig|83332.12.peg.1826","Rv1639c",null,"hypothetical protein Rv1639c","FIG00820127: hypothetical protein","L-O-lysylphosphatidylglycerol synthase (EC 2.3.2.3) / Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), L-O-lysylphosphatidylglycerol synthetase specific","synonymous_variantLOW"]
[54,"NC_000962",1847919,"C","G","3469.23","125.0","0.98","Synon","acg","acC","522G>C","Thr174Thr",null,"fig|83332.12.peg.1826","Rv1639c",null,"hypothetical protein Rv1639c","FIG00820127: hypothetical protein","L-O-lysylphosphatidylglycerol synthase (EC 2.3.2.3) / Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), L-O-lysylphosphatidylglycerol synthetase specific","synonymous_variantLOW"]
["MP2","NC_000962",1849609,"T","C","6371.59","189.0","1.00","Synon","cga","cgG","2160A>G","Arg720Arg",null,"fig|83332.12.peg.1827","Rv1640c","lysS","L-O-lysylphosphatidylglycerol synthase (EC 2.3.2.3) / Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), L-O-lysylphosphatidylglycerol synthetase specific","hypothetical protein Rv1639c","Translation initiation factor 3","synonymous_variantLOW"]
[58,"NC_000962",1854300,"T","C",{"v":525759,"d":"525,759"},"17.0","1.00","Nonsyn","ctg","cCg","695T>C","Leu232Pro",null,"fig|83332.12.peg.1831","Rv1644","tsnR","RNA methyltransferase, TrmH family","LSU ribosomal protein L20p","hypothetical protein Rv1645c","missense_variantMODERATE"]
[7011,"NC_000962",1854695,"C","T","2503.65","82.0","1.00","Nonsyn","gcg","Acg","760G>A","Ala254Thr",null,"fig|83332.12.peg.1832","Rv1645c",null,"hypothetical protein Rv1645c","RNA methyltransferase, TrmH family","PE family protein ","missense_variantMODERATE"]
[7739,"NC_000962",1855583,"A","C","2640.16","84.0","1.00",{"$nulls":10},"hypothetical protein Rv1645c","PE family protein ","intergenic_regionMODIFIER"]
["G01491","NC_000962",1856777,"G","C","6126.8","194.0","0.99",{"$nulls":10},"PE family protein ","Purine cyclase-related protein","intergenic_regionMODIFIER"]
[54,"NC_000962",1856777,"G","C","3579.91","113.0","0.98",{"$nulls":10},"PE family protein ","Purine cyclase-related protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",1859559,"C","A","7798.8","230.0","1.00","Nonsyn","gcc","gAc","860C>A","Ala287Asp",null,"fig|83332.12.peg.1836","Rv1649","pheS","Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)","Putative transmembrane protein","Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)","missense_variantMODERATE"]
["MP1","NC_000962",1859559,"C","A","7246.24","218.0","1.00","Nonsyn","gcc","gAc","860C>A","Ala287Asp",null,"fig|83332.12.peg.1836","Rv1649","pheS","Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)","Putative transmembrane protein","Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)","missense_variantMODERATE"]
[64,"NC_000962",1860392,"C","T",{"v":929924,"d":"929,924"},"31.0","1.00","Nonsyn","gcc","gTc","635C>T","Ala212Val",null,"fig|83332.12.peg.1837","Rv1650","pheT","Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)","Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)","PE_PGRS family protein ","missense_variantLOW"]
[7739,"NC_000962",1877311,"C","T","1202.05","40.0","1.00","Nonsyn","cgg","Tgg","2008C>T","Arg670Trp",null,"fig|83332.12.peg.1848","Rv1661","pks7","Modular polyketide synthase","Naringenin-chalcone synthase (EC 2.3.1.74)","Modular polyketide synthase","missense_variantLOW"]
["G01498","NC_000962",1882180,"C","T","2261.48","74.0","0.95","Synon","gcc","gcT","477C>T","Ala159Ala",null,"fig|83332.12.peg.1849","Rv1662","pks8","Modular polyketide synthase","Modular polyketide synthase","Modular polyketide synthase","synonymous_variantMODERATE"]
["G01491","NC_000962",1885481,"C","G","3826.96","121.0","0.99","Nonsyn","cga","Gga","3778C>G","Arg1260Gly",null,"fig|83332.12.peg.1849","Rv1662","pks8","Modular polyketide synthase","Modular polyketide synthase","Modular polyketide synthase","missense_variantMODERATE"]
[54,"NC_000962",1885481,"C","G",{"v":393173,"d":"393,173"},"12.0","1.00","Nonsyn","cga","Gga","3778C>G","Arg1260Gly",null,"fig|83332.12.peg.1849","Rv1662","pks8","Modular polyketide synthase","Modular polyketide synthase","Modular polyketide synthase","missense_variantMODERATE"]
["MP2","NC_000962",1885772,"G","A","5649.22","170.0","0.98","Nonsyn","gcc","Acc","4069G>A","Ala1357Thr",null,"fig|83332.12.peg.1849","Rv1662","pks8","Modular polyketide synthase","Modular polyketide synthase","Modular polyketide synthase","missense_variantMODERATE"]
["G01491","NC_000962",1888128,"G","A","3376.57","105.0","0.99","Nonsyn","gct","Act","103G>A","Ala35Thr",null,"fig|83332.12.peg.1851","Rv1664","pks9","Modular polyketide synthase","Modular polyketide synthase","Naringenin-chalcone synthase (EC 2.3.1.74)","missense_variantMODERATE"]
["MP2","NC_000962",1888128,"G","A","8004.49","233.0","1.00","Nonsyn","gct","Act","103G>A","Ala35Thr",null,"fig|83332.12.peg.1851","Rv1664","pks9","Modular polyketide synthase","Modular polyketide synthase","Naringenin-chalcone synthase (EC 2.3.1.74)","missense_variantMODERATE"]
[58,"NC_000962",1889073,"G","C","5308.18","157.0","1.00","Nonsyn","gca","Cca","1048G>C","Ala350Pro",null,"fig|83332.12.peg.1851","Rv1664","pks9","Modular polyketide synthase","Modular polyketide synthase","Naringenin-chalcone synthase (EC 2.3.1.74)","missense_variantMODERATE"]
[7011,"NC_000962",1889666,"G","A","2076.57","65.0","1.00","Synon","gtg","gtA","1641G>A","Val547Val",null,"fig|83332.12.peg.1851","Rv1664","pks9","Modular polyketide synthase","Modular polyketide synthase","Naringenin-chalcone synthase (EC 2.3.1.74)","synonymous_variantLOW"]
["G01492","NC_000962",1893473,"G","A","9823.81","328.0","0.94","Synon","acc","acT","108C>T","Thr36Thr",null,"fig|83332.12.peg.1853","Rv1666c","cyMP139","Cytochrome P450","Naringenin-chalcone synthase (EC 2.3.1.74)","Bis-ABC ATPase Uup","synonymous_variantLOW"]
["G01222","NC_000962",1893726,"G","A","549.67","17.0","1.00","Nonsyn","cgg","Tgg","505C>T","Arg169Trp",null,"fig|83332.12.peg.1854","Rv1667c",null,"Bis-ABC ATPase Uup","Cytochrome P450","Bis-ABC ATPase Uup","missense_variantHIGH"]
["MP1","NC_000962",1893726,"G","A","5475.28","165.0","0.99","Nonsyn","cgg","Tgg","505C>T","Arg169Trp",null,"fig|83332.12.peg.1854","Rv1667c",null,"Bis-ABC ATPase Uup","Cytochrome P450","Bis-ABC ATPase Uup","missense_variantHIGH"]
[64,"NC_000962",1894422,"A","G","2058.15","65.0","0.97","Synon","gat","gaC","921T>C","Asp307Asp",null,"fig|83332.12.peg.1855","Rv1668c",null,"Bis-ABC ATPase Uup","Bis-ABC ATPase Uup","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",1900800,"A","G","2920.29","90.0","1.00","Nonsyn","gtc","gCc","176T>C","Val59Ala",null,"fig|83332.12.peg.1863","Rv1675c",null,"Transcriptional regulator, Crp/Fnr family","hypothetical protein","Peroxiredoxin","missense_variantMODERATE"]
[58,"NC_000962",1900800,"A","G","1119.01","35.0","1.00","Nonsyn","gtc","gCc","176T>C","Val59Ala",null,"fig|83332.12.peg.1863","Rv1675c",null,"Transcriptional regulator, Crp/Fnr family","hypothetical protein","Peroxiredoxin","missense_variantMODERATE"]
[7011,"NC_000962",1901493,"T","C","2247.49","71.0","1.00","Synon","agt","agC","318T>C","Ser106Ser",null,"fig|83332.12.peg.1864","Rv1676",null,"Peroxiredoxin","Transcriptional regulator, Crp/Fnr family","Soluble secreted antigen MPT53 precursor","synonymous_variantLOW"]
[58,"NC_000962",1901816,"A","G","5530.82","168.0","0.99",{"$nulls":10},"Peroxiredoxin","Soluble secreted antigen MPT53 precursor","intergenic_regionMODIFIER"]
["G01491","NC_000962",1906336,"A","G","3210.22","100.0","0.98",{"$nulls":10},"Fe-S oxidoreductases of moaA/nifB/pqqE family","putative cellulose-binding protein","intergenic_regionMODIFIER"]
[54,"NC_000962",1906336,"A","G","21411.3","657.0","0.97",{"$nulls":10},"Fe-S oxidoreductases of moaA/nifB/pqqE family","putative cellulose-binding protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",1907296,"G","C","7970.37","234.0","1.00","Synon","gcg","gcC","825G>C","Ala275Ala",null,"fig|83332.12.peg.1870","Rv1682",null,"putative cellulose-binding protein","Fe-S oxidoreductases of moaA/nifB/pqqE family","hypothetical protein","synonymous_variantMODERATE"]
[58,"NC_000962",1912024,"C","A","6993.47","213.0","1.00","Nonsyn","gtc","Ttc","58G>T","Val20Phe",null,"fig|83332.12.peg.1875","Rv1686c",null,"Efflux ABC transporter, permease protein","Transcriptional regulator, AcrR family","ABC-type multidrug transport system ATP-binding component yhiH","missense_variantMODERATE"]
[7011,"NC_000962",1912582,"G","A","3621.64","117.0","0.99","Synon","gcc","gcT","339C>T","Ala113Ala",null,"fig|83332.12.peg.1876","Rv1687c",null,"ABC-type multidrug transport system ATP-binding component yhiH","Efflux ABC transporter, permease protein","DNA-3-methyladenine glycosylase II (EC 3.2.2.21)","synonymous_variantLOW"]
[7739,"NC_000962",1912582,"G","A","2704.27","88.0","1.00","Synon","gcc","gcT","339C>T","Ala113Ala",null,"fig|83332.12.peg.1876","Rv1687c",null,"ABC-type multidrug transport system ATP-binding component yhiH","Efflux ABC transporter, permease protein","DNA-3-methyladenine glycosylase II (EC 3.2.2.21)","synonymous_variantLOW"]
["G01498","NC_000962",1914570,"A","C","2035.52","71.0","1.00","Synon","gca","gcC","969A>C","Ala323Ala",null,"fig|83332.12.peg.1878","Rv1689","tyrS","Tyrosyl-tRNA synthetase (EC 6.1.1.1)","DNA-3-methyladenine glycosylase II (EC 3.2.2.21)","Lipoprotein LprJ, modulates kdpFABC expression via interacting with sensing domain of KdpD","synonymous_variantLOW"]
["G01491","NC_000962",1916137,"A","G","5571.63","177.0","0.99","Synon","cta","ctG","39A>G","Leu13Leu",null,"fig|83332.12.peg.1880","Rv1691",null,"TPR-repeat-containing protein","Lipoprotein LprJ, modulates kdpFABC expression via interacting with sensing domain of KdpD","4-nitrophenylphosphatase (EC 3.1.3.41)","synonymous_variantLOW"]
[54,"NC_000962",1916137,"A","G","1146.56","35.0","0.97","Synon","cta","ctG","39A>G","Leu13Leu",null,"fig|83332.12.peg.1880","Rv1691",null,"TPR-repeat-containing protein","Lipoprotein LprJ, modulates kdpFABC expression via interacting with sensing domain of KdpD","4-nitrophenylphosphatase (EC 3.1.3.41)","synonymous_variantLOW"]
["MP2","NC_000962",1920120,"G","T","6452.81","188.0","0.99","Synon","ccg","ccT","438G>T","Pro146Pro",null,"fig|83332.12.peg.1885","Rv1696","recN","DNA repair protein RecN","NAD kinase (EC 2.7.1.23)","FIG005773: conserved membrane protein ML1361","synonymous_variantMODERATE"]
["G01492","NC_000962",1924695,"C","T","9856.09","324.0","0.97","Synon","gac","gaT","867C>T","AsMP289Asp",null,"fig|83332.12.peg.1888","Rv1699","pyrG","CTP synthase (EC 6.3.4.2)","FIG007481: hypothetical protein","ADP-ribose pyrophosphatase (EC 3.6.1.13)","synonymous_variantLOW"]
[7739,"NC_000962",1924959,"T","C","2236.98","85.0","0.93","Synon","ggt","ggC","1131T>C","Gly377Gly",null,"fig|83332.12.peg.1888","Rv1699","pyrG","CTP synthase (EC 6.3.4.2)","FIG007481: hypothetical protein","ADP-ribose pyrophosphatase (EC 3.6.1.13)","synonymous_variantLOW"]
["G01498","NC_000962",1928811,"C","T","2493.07","87.0","0.94",{"$nulls":10},"13E12 repeat family protein","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",1928811,"C","T","3004.56","97.0","0.99",{"$nulls":10},"13E12 repeat family protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",1931179,"C","A","10622.6","347.0","0.99","Nonsyn","cgg","cTg","278G>T","Arg93Leu",null,"fig|83332.12.peg.1894","Rv1704c","cycA","D-serine/D-alanine/glycine transporter","Probable catechol-o-methyltransferase (EC 2.1.1.6)","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
["G01222","NC_000962",1931264,"CAAAAAAC","CAAAAAAAC",{"v":740766,"d":"740,766"},"25.0","0.93","Insertion","gggttttttgtg","ggGTTTTTTTGtg","186_187insT","Gly62_Phe63fs","yes","fig|83332.12.peg.1894","Rv1704c","cycA","D-serine/D-alanine/glycine transporter","Probable catechol-o-methyltransferase (EC 2.1.1.6)","PPE family protein, SVP subgroup ","frameshift_variantHIGH"]
["MP1","NC_000962",1931264,"CAAAAAAC","CAAAAAAAC","6398.43","194.0","0.95","Insertion","gggttttttgtg","ggGTTTTTTTGtg","186_187insT","Gly62_Phe63fs","yes","fig|83332.12.peg.1894","Rv1704c","cycA","D-serine/D-alanine/glycine transporter","Probable catechol-o-methyltransferase (EC 2.1.1.6)","PPE family protein, SVP subgroup ","frameshift_variantHIGH"]
[64,"NC_000962",1931470,"G","A","2668.26","82.0","0.99",{"$nulls":10},"D-serine/D-alanine/glycine transporter","PPE family protein, SVP subgroup ","intergenic_regionLOW"]
[7739,"NC_000962",1933176,"C","T","2424.38","82.0","0.98","Nonsyn","gcg","Acg","523G>A","Ala175Thr",null,"fig|83332.12.peg.1896","Rv1706c","PPE23","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",1933988,"G","A","2173.0","67.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",1935695,"T","G","3072.76","98.0","0.99","Nonsyn","tcc","Gcc","778T>G","Ser260Ala",null,"fig|83332.12.peg.1900","Rv1707",null,"Sulfate permease","hypothetical protein","ParA-like protein","missense_variantMODERATE"]
["G01492","NC_000962",1935695,"T","G","9576.14","313.0","0.99","Nonsyn","tcc","Gcc","778T>G","Ser260Ala",null,"fig|83332.12.peg.1900","Rv1707",null,"Sulfate permease","hypothetical protein","ParA-like protein","missense_variantMODERATE"]
["G01491","NC_000962",1936525,"G","A","3442.54","112.0","0.98","Nonsyn","gcg","Acg","73G>A","Ala25Thr",null,"fig|83332.12.peg.1901","Rv1708",null,"ParA-like protein","Sulfate permease","Segregation and condensation protein A","missense_variantMODERATE"]
[54,"NC_000962",1936525,"G","A",{"v":474646,"d":"474,646"},"16.0","1.00","Nonsyn","gcg","Acg","73G>A","Ala25Thr",null,"fig|83332.12.peg.1901","Rv1708",null,"ParA-like protein","Sulfate permease","Segregation and condensation protein A","missense_variantLOW"]
["MP2","NC_000962",1937070,"G","A","7596.13","224.0","1.00","Synon","ccg","ccA","618G>A","Pro206Pro",null,"fig|83332.12.peg.1901","Rv1708",null,"ParA-like protein","Sulfate permease","Segregation and condensation protein A","synonymous_variantLOW"]
[58,"NC_000962",1941427,"G","T",{"v":619665,"d":"619,665"},"19.0","1.00","Synon","ccg","ccT","1119G>T","Pro373Pro",null,"fig|83332.12.peg.1906","Rv1713","engA","GTP-binding protein EngA","Cytidylate kinase (EC 2.7.4.25)","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",1944402,"T","C","2063.3","67.0","1.00","Nonsyn","gtc","gCc","827T>C","Val276Ala",null,"fig|83332.12.peg.1909","Rv1716",null,"Kynurenine formamidase, bacterial (EC 3.5.1.9)","3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",1947168,"G","A","9727.16","310.0","0.98","Synon","tac","taT","252C>T","Tyr84Tyr",null,"fig|83332.12.peg.1915","Rv1720c",null,"toxin VapC12 @ Toxin 1, PIN domain","hypothetical protein","antitoxin VapB12 @ Antitoxin 1","synonymous_variantLOW"]
["G01222","NC_000962",1950767,"T","C","1457.51","44.0","0.98","Synon","aaa","aaG","282A>G","Lys94Lys",null,"fig|83332.12.peg.1919","Rv1724c",null,"hypothetical protein","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily","Transcriptional regulator, HxlR family / Domain of unknown function","synonymous_variantLOW"]
["G01491","NC_000962",1950767,"T","C","3697.46","112.0","1.00","Synon","aaa","aaG","282A>G","Lys94Lys",null,"fig|83332.12.peg.1919","Rv1724c",null,"hypothetical protein","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily","Transcriptional regulator, HxlR family / Domain of unknown function","synonymous_variantLOW"]
[54,"NC_000962",1950767,"T","C","5110.02","176.0","0.93","Synon","aaa","aaG","282A>G","Lys94Lys",null,"fig|83332.12.peg.1919","Rv1724c",null,"hypothetical protein","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily","Transcriptional regulator, HxlR family / Domain of unknown function","synonymous_variantLOW"]
["MP2","NC_000962",1951764,"G","A","5936.16","178.0","0.99",{"$nulls":10},"Transcriptional regulator, HxlR family / Domain of unknown function","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",1952160,"T","C",{"v":330194,"d":"330,194"},"14.0","0.78","Synon","act","acC","309T>C","Thr103Thr",null,"fig|83332.12.peg.1921","Rv1726",null,"hypothetical protein","Transcriptional regulator, HxlR family / Domain of unknown function","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",1952827,"C","T","2864.38","93.0","1.00","Nonsyn","cac","Tac","976C>T","His326Tyr",null,"fig|83332.12.peg.1921","Rv1726",null,"hypothetical protein","Transcriptional regulator, HxlR family / Domain of unknown function","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",1954354,"CT","TG","1602.77","60.0","0.87","Nonsyn","agt","CAt","187AG>CA","Ser63His",null,"fig|83332.12.peg.1923","Rv1728c",null,"hypothetical protein","hypothetical protein","O-methyltransferase","missense_variantMODERATE"]
["G01491","NC_000962",1956523,"C","A","3619.14","114.0","0.99","Synon","acg","acT","723G>T","Thr241Thr",null,"fig|83332.12.peg.1925","Rv1730c",null,"Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily","O-methyltransferase","Succinate-semialdehyde dehydrogenase [NADP+] dependent (Ssdh) gabD2","synonymous_variantMODIFIER"]
[54,"NC_000962",1956523,"C","A","21080.4","641.0","1.00","Synon","acg","acT","723G>T","Thr241Thr",null,"fig|83332.12.peg.1925","Rv1730c",null,"Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily","O-methyltransferase","Succinate-semialdehyde dehydrogenase [NADP+] dependent (Ssdh) gabD2","synonymous_variantLOW"]
["G01222","NC_000962",1960284,"C","A",{"v":631164,"d":"631,164"},"22.0","1.00","Nonsyn","cag","caT","168G>T","Gln56His",null,"fig|83332.12.peg.1928","Rv1733c",null,"hypothetical protein","Alkyl hydroperoxide reductase and/or thiol-specific antioxidant family (AhpC/TSA) protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",1960284,"C","A","4989.58","151.0","0.99","Nonsyn","cag","caT","168G>T","Gln56His",null,"fig|83332.12.peg.1928","Rv1733c",null,"hypothetical protein","Alkyl hydroperoxide reductase and/or thiol-specific antioxidant family (AhpC/TSA) protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",1963957,"T","C","3980.41","120.0","0.98","Nonsyn","gac","gGc","230A>G","Asp77Gly",null,"fig|83332.12.peg.1933","Rv1736c","narX","Respiratory nitrate reductase alpha chain (EC 1.7.99.4)","hypothetical protein","Nitrate/nitrite transporter NarT","missense_variantMODERATE"]
[7739,"NC_000962",1965434,"A","G","2595.79","83.0","1.00",{"$nulls":10},"Nitrate/nitrite transporter NarT","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",1967237,"C","A","2302.34","73.0","1.00","Nonsyn","cga","cTa","401G>T","Arg134Leu",null,"fig|83332.12.peg.1936","Rv1739c",null,"Sulfate transporter","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",1968116,"A","C","5293.52","166.0","0.99","Nonsyn","aag","aCg","200A>C","Lys67Thr",null,"fig|83332.12.peg.1938","Rv1741",null,"toxin VapC34 @ Toxin 1, PIN domain","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",1968250,"GCG","GCCG","3932.6","126.0","0.94","Insertion","gggcgg","ggGCCGg","80_81insC","Arg27_Val28fs","yes","fig|83332.12.peg.1939","Rv1742",null,"hypothetical protein","toxin VapC34 @ Toxin 1, PIN domain","Serine/threonine-protein kinase pknE (EC 2.7.11.1)","frameshift_variantHIGH"]
["MP1","NC_000962",1968250,"GCG","GCCG","4570.93","137.0","0.91","Insertion","gggcgg","ggGCCGg","80_81insC","Arg27_Val28fs","yes","fig|83332.12.peg.1939","Rv1742",null,"hypothetical protein","toxin VapC34 @ Toxin 1, PIN domain","Serine/threonine-protein kinase pknE (EC 2.7.11.1)","frameshift_variantHIGH"]
[54,"NC_000962",1968250,"GCG","GCCG","1087.05","34.0","0.92","Insertion","gggcgg","ggGCCGg","80_81insC","Arg27_Val28fs","yes","fig|83332.12.peg.1939","Rv1742",null,"hypothetical protein","toxin VapC34 @ Toxin 1, PIN domain","Serine/threonine-protein kinase pknE (EC 2.7.11.1)","frameshift_variantHIGH"]
["MP2","NC_000962",1971725,"G","C","5162.19","151.0","1.00","Synon","cgc","cgG","267C>G","Arg89Arg",null,"fig|83332.12.peg.1944","Rv1745c","idi","Isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2)","hypothetical protein","Probable serine/threonine-protein kinase pknF (EC 2.7.11.1)","synonymous_variantLOW"]
[58,"NC_000962",1975960,"G","T","6541.2","195.0","0.99","Synon","tcg","tcT","2325G>T","Ser775Ser",null,"fig|83332.12.peg.1946","Rv1747",null,"Efflux transmembrane permease Rv1747 family ","Probable serine/threonine-protein kinase pknF (EC 2.7.11.1)","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",1982901,"G","T","1143.93","48.0","1.00","Synon","ccc","ccA","1875C>A","Pro625Pro",null,"fig|83332.12.peg.1953","Rv1753c","PPE24","PPE family protein, MPTR subgroup ","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",1983313,"T","G","6223.09","199.0","0.99","Nonsyn","aac","aCc","1463A>C","Asn488Thr",null,"fig|83332.12.peg.1953","Rv1753c","PPE24","PPE family protein, MPTR subgroup ","hypothetical protein","hypothetical protein","missense_variantHIGH"]
["G01222","NC_000962",1993808,"A","T","741.4","25.0","0.96","Nonsyn","gag","gTg","554A>T","Glu185Val",null,"fig|83332.12.peg.1963","Rv1760",null,"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",1993808,"A","T","5970.8","185.0","0.98","Nonsyn","gag","gTg","554A>T","Glu185Val",null,"fig|83332.12.peg.1963","Rv1760",null,"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",1995095,"CC","GT",{"v":238345,"d":"238,345"},"7.0","1.00","Nonsyn","ggggaa","ggACaa","747GG>AC","GlyGlu249GlyGln",null,"fig|83332.12.peg.1965","Rv1762c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",1995095,"CC","GT","6702.02","198.0","1.00","Nonsyn","ggggaa","ggACaa","747GG>AC","GlyGlu249GlyGln",null,"fig|83332.12.peg.1965","Rv1762c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",2000478,"T","C","6699.61","205.0","1.00",{"$nulls":10},"Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44)","PE_PGRS family protein ","intergenic_regionMODIFIER"]
[7739,"NC_000962",2000633,"T","C","2822.37","99.0","0.98","Nonsyn","gtg","gCg","20T>C","Val7Ala",null,"fig|83332.12.peg.1975","Rv1768","PE_PGRS31","PE_PGRS family protein ","Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44)","L-gulono-1,4-lactone oxidase (EC 1.1.3.8)","missense_variantMODERATE"]
["G01498","NC_000962",2003084,"G","A","3339.03","116.0","0.93","Synon","ccg","ccA","459G>A","Pro153Pro",null,"fig|83332.12.peg.1976","Rv1769",null,"L-gulono-1,4-lactone oxidase (EC 1.1.3.8)","PE_PGRS family protein ","Putative aminopeptidase","synonymous_variantLOW"]
["G01491","NC_000962",2004057,"G","C","5762.56","185.0","0.98","Nonsyn","gag","gaC","99G>C","Glu33Asp",null,"fig|83332.12.peg.1977","Rv1770",null,"Putative aminopeptidase","L-gulono-1,4-lactone oxidase (EC 1.1.3.8)","Oxidoreductase, FAD-binding","missense_variantMODERATE"]
[54,"NC_000962",2004057,"G","C",{"v":735535,"d":"735,535"},"26.0","1.00","Nonsyn","gag","gaC","99G>C","Glu33Asp",null,"fig|83332.12.peg.1977","Rv1770",null,"Putative aminopeptidase","L-gulono-1,4-lactone oxidase (EC 1.1.3.8)","Oxidoreductase, FAD-binding","missense_variantMODERATE"]
["MP2","NC_000962",2007352,"C","T","7567.72","227.0","0.99","Nonsyn","ggg","Agg","364G>A","Gly122Arg",null,"fig|83332.12.peg.1982","Rv1773c",null,"Transcriptional regulator, IclR family","hypothetical protein","Oxidoreductase, FAD-binding","missense_variantHIGH"]
[58,"NC_000962",2010614,"G","A","4999.94","161.0","0.99",{"$nulls":10},"Transcriptional regulator, AcrR family","Cytochrome P450 144","intergenic_regionMODIFIER"]
[64,"NC_000962",2010614,"G","A","3557.71","116.0","0.98",{"$nulls":10},"Transcriptional regulator, AcrR family","Cytochrome P450 144","intergenic_regionMODIFIER"]
[7739,"NC_000962",2017291,"T","C","2664.22","86.0","0.99","Synon","cga","cgG","195A>G","Arg65Arg",null,"fig|83332.12.peg.1991","Rv1781c","malQ","4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)","FIG00820556: hypothetical protein","Membrane protein EccB5, component of Type VII secretion system ESX-5","synonymous_variantLOW"]
["G01498","NC_000962",2017861,"G","A","1177.06","41.0","1.00",{"$nulls":10},"4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)","Membrane protein EccB5, component of Type VII secretion system ESX-5","intergenic_regionMODIFIER"]
["G01491","NC_000962",2019236,"T","G","4596.97","147.0","0.99","Synon","cct","ccG","1368T>G","Pro456Pro",null,"fig|83332.12.peg.1992","Rv1782",null,"Membrane protein EccB5, component of Type VII secretion system ESX-5","4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)","FtsK/SpoIIIE family protein EccC5, component of Type VII secretion system ESX-5","synonymous_variantLOW"]
["G01492","NC_000962",2020563,"A","T","10154.9","323.0","1.00","Nonsyn","tag","tTg","1307A>T","Ter436Leuext*?",null,"fig|83332.12.peg.1993","Rv1783",null,"FtsK/SpoIIIE family protein EccC5, component of Type VII secretion system ESX-5","Membrane protein EccB5, component of Type VII secretion system ESX-5","FtsK/SpoIIIE family protein EccC5, component of Type VII secretion system ESX-5","stop_lostHIGH"]
["MP1","NC_000962",2020563,"A","T","7059.46","209.0","1.00","Nonsyn","tag","tTg","1307A>T","Ter436Leuext*?",null,"fig|83332.12.peg.1993","Rv1783",null,"FtsK/SpoIIIE family protein EccC5, component of Type VII secretion system ESX-5","Membrane protein EccB5, component of Type VII secretion system ESX-5","FtsK/SpoIIIE family protein EccC5, component of Type VII secretion system ESX-5","stop_lostHIGH"]
[64,"NC_000962",2022868,"T","C",{"v":161899,"d":"161,899"},"6.0","1.00","Synon","agt","agC","2235T>C","Ser745Ser",null,"fig|83332.12.peg.1994","Rv1784",null,"FtsK/SpoIIIE family protein EccC5, component of Type VII secretion system ESX-5","FtsK/SpoIIIE family protein EccC5, component of Type VII secretion system ESX-5","Cytochrome P450 143","synonymous_variantLOW"]
[7739,"NC_000962",2028968,"C","A","2318.79","79.0","1.00","Nonsyn","cag","Aag","544C>A","Gln182Lys",null,"fig|83332.12.peg.2001","Rv1790","PPE27","PPE family protein, SVP subgroup ","hypothetical protein","PE family protein ","missense_variantLOW"]
[58,"NC_000962",2028968,"C","A","1433.8","47.0","1.00","Nonsyn","cag","Aag","544C>A","Gln182Lys",null,"fig|83332.12.peg.2001","Rv1790","PPE27","PPE family protein, SVP subgroup ","hypothetical protein","PE family protein ","missense_variantMODERATE"]
[7011,"NC_000962",2031176,"G","T","3076.86","98.0","1.00","Synon","ccg","ccT","111G>T","Pro37Pro",null,"fig|83332.12.peg.2006","Rv1794",null,"FIG023076: hypothetical protein in PPE gene cluster","hypothetical protein","Integral membrane protein EccD5, component of Type VII secretion system ESX-5","synonymous_variantLOW"]
["G01492","NC_000962",2033021,"G","A","10215.4","325.0","1.00","Nonsyn","ggt","gAt","782G>A","Gly261Asp",null,"fig|83332.12.peg.2007","Rv1795",null,"Integral membrane protein EccD5, component of Type VII secretion system ESX-5","FIG023076: hypothetical protein in PPE gene cluster","Serine protease mycosin MycP5, component of Type VII secretion system ESX-5","missense_variantMODERATE"]
["G01222","NC_000962",2039884,"T","G",{"v":970317,"d":"970,317"},"31.0","1.00","Nonsyn","tgt","tgG","432T>G","Cys144Trp",null,"fig|83332.12.peg.2012","Rv1800","PPE28","PPE family protein, MPTR subgroup ","hypothetical protein","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
["MP1","NC_000962",2039884,"T","G","7307.37","210.0","1.00","Nonsyn","tgt","tgG","432T>G","Cys144Trp",null,"fig|83332.12.peg.2012","Rv1800","PPE28","PPE family protein, MPTR subgroup ","hypothetical protein","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
[64,"NC_000962",2040209,"T","G",{"v":485939,"d":"485,939"},"19.0","0.83","Nonsyn","ttc","Gtc","757T>G","Phe253Val",null,"fig|83332.12.peg.2012","Rv1800","PPE28","PPE family protein, MPTR subgroup ","hypothetical protein","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
[7739,"NC_000962",2045310,"A","G","1271.02","44.0","1.00","Synon","att","atC","1566T>C","Ile522Ile",null,"fig|83332.12.peg.2015","Rv1803c","PE_PGRS32","PE_PGRS family protein ","PPE family protein, SVP subgroup ","FIG00819992: hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",2045773,"A","T","4720.84","165.0","0.95","Nonsyn","atc","aAc","1103T>A","Ile368Asn",null,"fig|83332.12.peg.2015","Rv1803c","PE_PGRS32","PE_PGRS family protein ","PPE family protein, SVP subgroup ","FIG00819992: hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",2045773,"A","T","1728.45","59.0","1.00","Nonsyn","atc","aAc","1103T>A","Ile368Asn",null,"fig|83332.12.peg.2015","Rv1803c","PE_PGRS32","PE_PGRS family protein ","PPE family protein, SVP subgroup ","FIG00819992: hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",2046859,"T","C","2558.7","85.0","1.00","Nonsyn","gac","gGc","17A>G","Asp6Gly",null,"fig|83332.12.peg.2015","Rv1803c","PE_PGRS32","PE_PGRS family protein ","PPE family protein, SVP subgroup ","FIG00819992: hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",2049065,"T","C","5061.26","159.0","1.00","Nonsyn","ttc","tCc","680T>C","Phe227Ser",null,"fig|83332.12.peg.2019","Rv1807","PPE31","PPE family protein, SVP subgroup ","PE family protein ","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
[54,"NC_000962",2049065,"T","C","1038.4","38.0","0.97","Nonsyn","ttc","tCc","680T>C","Phe227Ser",null,"fig|83332.12.peg.2019","Rv1807","PPE31","PPE family protein, SVP subgroup ","PE family protein ","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
["MP2","NC_000962",2049097,"G","C","6423.0","187.0","0.99","Nonsyn","gtc","Ctc","712G>C","Val238Leu",null,"fig|83332.12.peg.2019","Rv1807","PPE31","PPE family protein, SVP subgroup ","PE family protein ","PPE family protein, SVP subgroup ","missense_variantMODIFIER"]
[58,"NC_000962",2050061,"A","G","1819.12","63.0","1.00","Synon","tca","tcG","144A>G","Ser48Ser",null,"fig|83332.12.peg.2020","Rv1808","PPE32","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","synonymous_variantLOW"]
[7011,"NC_000962",2050822,"G","C","2455.9","90.0","1.00","Nonsyn","gga","gCa","905G>C","Gly302Ala",null,"fig|83332.12.peg.2020","Rv1808","PPE32","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","missense_variantLOW"]
["G01492","NC_000962",2051746,"T","C","10465.2","344.0","0.99","Synon","gct","gcC","465T>C","Ala155Ala",null,"fig|83332.12.peg.2021","Rv1809","PPE33","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","FIG00819992: hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",2051746,"T","C","3079.65","101.0","1.00","Synon","gct","gcC","465T>C","Ala155Ala",null,"fig|83332.12.peg.2021","Rv1809","PPE33","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","FIG00819992: hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",2052035,"G","T","6767.06","215.0","1.00","Nonsyn","gtg","Ttg","754G>T","Val252Leu",null,"fig|83332.12.peg.2021","Rv1809","PPE33","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","FIG00819992: hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2052035,"G","T","7303.77","216.0","1.00","Nonsyn","gtg","Ttg","754G>T","Val252Leu",null,"fig|83332.12.peg.2021","Rv1809","PPE33","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","FIG00819992: hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2052687,"G","C","9461.38","276.0","0.99","Nonsyn","tga","tCa","1406G>C","Ter469Serext*?",null,"fig|83332.12.peg.2021","Rv1809","PPE33","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","FIG00819992: hypothetical protein","stop_lostMODIFIER"]
[64,"NC_000962",2053155,"G","A",{"v":840409,"d":"840,409"},"27.0","1.00","Nonsyn","ggc","Agc","181G>A","Gly61Ser",null,"fig|83332.12.peg.2022","Rv1810",null,"FIG00819992: hypothetical protein","PPE family protein, SVP subgroup ","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",2055066,"G","A","3266.68","103.0","1.00","Synon","agc","agT","285C>T","Ser95Ser",null,"fig|83332.12.peg.2025","Rv1812c",null,"NADH dehydrogenase (EC 1.6.99.3)","Mg(2+)-transport-ATPase-associated protein MgtC","putative membrane protein","synonymous_variantLOW"]
["G01498","NC_000962",2055271,"A","G","2042.32","73.0","0.97","Nonsyn","cta","cCa","80T>C","Leu27Pro",null,"fig|83332.12.peg.2025","Rv1812c",null,"NADH dehydrogenase (EC 1.6.99.3)","Mg(2+)-transport-ATPase-associated protein MgtC","putative membrane protein","missense_variantMODERATE"]
["G01491","NC_000962",2055614,"G","A","4130.19","131.0","1.00",{"$nulls":10},"NADH dehydrogenase (EC 1.6.99.3)","putative membrane protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",2055614,"G","A","9899.15","322.0","0.98",{"$nulls":10},"NADH dehydrogenase (EC 1.6.99.3)","putative membrane protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",2057774,"A","T",{"v":500739,"d":"500,739"},"18.0","1.00","Nonsyn","atc","Ttc","202A>T","Ile68Phe",null,"fig|83332.12.peg.2028","Rv1815",null,"hypothetical protein","Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase)","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
["MP1","NC_000962",2057774,"A","T","6352.77","189.0","0.99","Nonsyn","atc","Ttc","202A>T","Ile68Phe",null,"fig|83332.12.peg.2028","Rv1815",null,"hypothetical protein","Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase)","Transcriptional regulator, AcrR family","missense_variantLOW"]
[64,"NC_000962",2062922,"T","C","2686.64","86.0","0.99","Nonsyn","atc","Gtc","1609A>G","Ile537Val",null,"fig|83332.12.peg.2032","Rv1819c",null,"Efflux ABC transporter, permease/ATP-binding protein","PE_PGRS family protein ","Thiamine pyrophosphate-requiring enzymes","missense_variantMODERATE"]
[7739,"NC_000962",2072190,"A","C","2832.02","87.0","1.00","Nonsyn","gag","gCg","239A>C","Glu80Ala",null,"fig|83332.12.peg.2039","Rv1826","gcvH","Glycine cleavage system H protein","Uncharacterized protein YlxW","Glycogen accumulation regulator GarA","missense_variantMODERATE"]
["G01498","NC_000962",2074754,"C","T","1637.25","56.0","1.00",{"$nulls":10},"hypothetical protein","Uncharacterized HTH-type transcriptional regulator","intergenic_regionMODIFIER"]
["G01492","NC_000962",2075089,"T","C","10727.0","348.0","0.99","Synon","tat","taC","204T>C","Tyr68Tyr",null,"fig|83332.12.peg.2043","Rv1830",null,"Uncharacterized HTH-type transcriptional regulator","hypothetical protein","Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)","synonymous_variantLOW"]
["G01222","NC_000962",2075778,"C","G",{"v":820827,"d":"820,827"},"25.0","1.00",{"$nulls":10},"Uncharacterized HTH-type transcriptional regulator","Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)","intergenic_regionMODIFIER"]
["G01491","NC_000962",2075778,"C","G","4426.28","145.0","0.96",{"$nulls":10},"Uncharacterized HTH-type transcriptional regulator","Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)","intergenic_regionMODIFIER"]
[54,"NC_000962",2075778,"C","G",{"v":517285,"d":"517,285"},"16.0","1.00",{"$nulls":10},"Uncharacterized HTH-type transcriptional regulator","Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)","intergenic_regionMODIFIER"]
["MP2","NC_000962",2076502,"A","C","5531.46","160.0","1.00","Nonsyn","gac","gCc","626A>C","AsMP209Ala",null,"fig|83332.12.peg.2044","Rv1832","gcvB","Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)","Uncharacterized HTH-type transcriptional regulator","Haloalkane dehalogenase 2 (EC 3.8.1.5)","missense_variantMODERATE"]
[58,"NC_000962",2077218,"A","G","1306.13","44.0","1.00","Nonsyn","acg","Gcg","1342A>G","Thr448Ala",null,"fig|83332.12.peg.2044","Rv1832","gcvB","Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)","Uncharacterized HTH-type transcriptional regulator","Haloalkane dehalogenase 2 (EC 3.8.1.5)","missense_variantLOW"]
[7011,"NC_000962",2082420,"T","C","2607.0","93.0","1.00","Synon","gca","gcG","90A>G","Ala30Ala",null,"fig|83332.12.peg.2047","Rv1835c",null,"hypothetical protein","Hydrolase","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",2083589,"C","T","8132.76","261.0","0.98","Nonsyn","gcg","Acg","1048G>A","Ala350Thr",null,"fig|83332.12.peg.2048","Rv1836c",null,"hypothetical protein","hypothetical protein","Malate synthase G (EC 2.3.3.9)","missense_variantMODERATE"]
["G01222","NC_000962",2087585,"G","T",{"v":819669,"d":"819,669"},"27.0","1.00","Nonsyn","gcg","gAg","68C>A","Ala23Glu",null,"fig|83332.12.peg.2050","Rv1838c",null,"toxin VapC13 @ Toxin 1, PIN domain","Malate synthase G (EC 2.3.3.9)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2087585,"G","T","5685.52","175.0","1.00","Nonsyn","gcg","gAg","68C>A","Ala23Glu",null,"fig|83332.12.peg.2050","Rv1838c",null,"toxin VapC13 @ Toxin 1, PIN domain","Malate synthase G (EC 2.3.3.9)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2087585,"G","T","5356.64","169.0","1.00","Nonsyn","gcg","gAg","68C>A","Ala23Glu",null,"fig|83332.12.peg.2050","Rv1838c",null,"toxin VapC13 @ Toxin 1, PIN domain","Malate synthase G (EC 2.3.3.9)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2088275,"A","C",{"v":400801,"d":"400,801"},"16.0","1.00","Nonsyn","ctg","cGg","1244T>G","Leu415Arg",null,"fig|83332.12.peg.2052","Rv1840c","PE_PGRS34","PE_PGRS family protein ","hypothetical protein","Magnesium and cobalt efflux protein CorC","missense_variantMODERATE"]
[64,"NC_000962",2090776,"A","G","1839.95","62.0","0.98","Nonsyn","ttg","tCg","1310T>C","Leu437Ser",null,"fig|83332.12.peg.2054","Rv1842c",null,"UPF0053 protein Rv1842c/MT1890","Magnesium and cobalt efflux protein CorC","Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain","missense_variantMODERATE"]
[7739,"NC_000962",2092322,"G","C","2451.76","80.0","0.98","Synon","gcc","gcG","1377C>G","Ala459Ala",null,"fig|83332.12.peg.2055","Rv1843c","guaB1","Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain","UPF0053 protein Rv1842c/MT1890","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","synonymous_variantLOW"]
["G01498","NC_000962",2093715,"T","C","2502.63","77.0","1.00",{"$nulls":10},"Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","intergenic_regionMODIFIER"]
["G01491","NC_000962",2095417,"G","A","5989.27","191.0","1.00","Nonsyn","gcg","gTg","752C>T","Ala251Val",null,"fig|83332.12.peg.2057","Rv1845c",null,"Peptidase M48, Ste24p precursor","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","Transcriptional regulator, BlaI family","missense_variantMODERATE"]
[54,"NC_000962",2095417,"G","A",{"v":150127,"d":"150,127"},"6.0","1.00","Nonsyn","gcg","gTg","752C>T","Ala251Val",null,"fig|83332.12.peg.2057","Rv1845c",null,"Peptidase M48, Ste24p precursor","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","Transcriptional regulator, BlaI family","missense_variantMODIFIER"]
["MP2","NC_000962",2096186,"A","G","6910.41","202.0","1.00","Synon","act","acC","414T>C","Thr138Thr",null,"fig|83332.12.peg.2058","Rv1846c",null,"Transcriptional regulator, BlaI family","Peptidase M48, Ste24p precursor","Putative esterase","synonymous_variantLOW"]
["MP1","NC_000962",2096186,"A","G","5049.63","149.0","1.00","Synon","act","acC","414T>C","Thr138Thr",null,"fig|83332.12.peg.2058","Rv1846c",null,"Transcriptional regulator, BlaI family","Peptidase M48, Ste24p precursor","Putative esterase","synonymous_variantLOW"]
[64,"NC_000962",2097144,"G","C","5899.38","173.0","0.99","Nonsyn","gtg","Ctg","268G>C","Val90Leu",null,"fig|83332.12.peg.2059","Rv1847",null,"Putative esterase","Transcriptional regulator, BlaI family","Urease gamma subunit (EC 3.5.1.5)","missense_variantMODERATE"]
[7739,"NC_000962",2107511,"C","T","2391.98","78.0","1.00","Nonsyn","acg","aTg","938C>T","Thr313Met",null,"fig|83332.12.peg.2071","Rv1859","modC","Molybdenum ABC transporter ATP-binding protein ModC","Molybdenum ABC transporter permease protein ModB","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",2108141,"T","C","2393.06","79.0","1.00","Nonsyn","ttc","Ctc","22T>C","Phe8Leu",null,"fig|83332.12.peg.2073","Rv1860","apa","hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",2108890,"A","C","10950.9","354.0","0.99",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",2109523,"CGG","CGGG",{"v":801587,"d":"801,587"},"27.0","1.00","Insertion",{"$nulls":9},"putative membrane protein","Alcohol dehydrogenase (EC 1.1.1.1)","intergenic_regionMODIFIER"]
["MP1","NC_000962",2109523,"CGG","CGGG","5779.38","192.0","0.92","Insertion",{"$nulls":9},"putative membrane protein","Alcohol dehydrogenase (EC 1.1.1.1)","intergenic_regionMODIFIER"]
[64,"NC_000962",2110365,"A","C","2992.09","93.0","0.94","Synon","aca","acC","822A>C","Thr274Thr",null,"fig|83332.12.peg.2077","Rv1862","adhA","Alcohol dehydrogenase (EC 1.1.1.1)","putative membrane protein","putative membrane protein","synonymous_variantLOW"]
["MP2","NC_000962",2110365,"A","C","5085.92","148.0","0.99","Synon","aca","acC","822A>C","Thr274Thr",null,"fig|83332.12.peg.2077","Rv1862","adhA","Alcohol dehydrogenase (EC 1.1.1.1)","putative membrane protein","putative membrane protein","synonymous_variantMODERATE"]
[58,"NC_000962",2116903,"C","T",{"v":564415,"d":"564,415"},"19.0","1.00","Synon","ggc","ggT","1116C>T","Gly372Gly",null,"fig|83332.12.peg.2083","Rv1867",null,"Acetyl-CoA acetyltransferase","hypothetical protein","Phosphoenolpyruvate synthase (EC 2.7.9.2)","synonymous_variantLOW"]
[7011,"NC_000962",2120796,"T","A","2927.79","93.0","1.00","Nonsyn","taa","tTa","602A>T","Ter201Leuext*?",null,"fig|83332.12.peg.2086","Rv1870c",null,"hypothetical protein","Anthranilate dioxygenase reductase","hypothetical protein","stop_lostHIGH"]
["G01492","NC_000962",2122625,"A","G","10189.5","333.0","0.98","Nonsyn","gtc","gCc","527T>C","Val176Ala",null,"fig|83332.12.peg.2088","Rv1872c","lldD2","L-lactate dehydrogenase","hypothetical protein","NTP pyrophosphohydrolases including oxidative damage repair enzymes","missense_variantMODERATE"]
["G01222","NC_000962",2122976,"C","G",{"v":937604,"d":"937,604"},"29.0","1.00","Nonsyn","ggt","gCt","176G>C","Gly59Ala",null,"fig|83332.12.peg.2088","Rv1872c","lldD2","L-lactate dehydrogenase","hypothetical protein","NTP pyrophosphohydrolases including oxidative damage repair enzymes","missense_variantMODIFIER"]
["MP1","NC_000962",2122976,"C","G","6330.99","187.0","1.00","Nonsyn","ggt","gCt","176G>C","Gly59Ala",null,"fig|83332.12.peg.2088","Rv1872c","lldD2","L-lactate dehydrogenase","hypothetical protein","NTP pyrophosphohydrolases including oxidative damage repair enzymes","missense_variantMODIFIER"]
[7011,"NC_000962",2125863,"C","T","2650.73","84.0","1.00",{"$nulls":10},"Bacterioferritin (EC 1.16.3.1)","MFS-type transporter Rv1877 family ","intergenic_regionMODIFIER"]
[58,"NC_000962",2126607,"GCG","GCCG",{"v":107479,"d":"107,479"},"4.0","0.67","Insertion","ggcgga","gGCCGga","637_638insC","Gly213_Thr214fs","yes","fig|83332.12.peg.2094","Rv1877",null,"MFS-type transporter Rv1877 family ","Bacterioferritin (EC 1.16.3.1)","Glutamine synthetase-like protein","frameshift_variantHIGH"]
[64,"NC_000962",2126607,"GCG","GCCG",{"v":166505,"d":"166,505"},"6.0","0.60","Insertion","ggcgga","gGCCGga","637_638insC","Gly213_Thr214fs","yes","fig|83332.12.peg.2094","Rv1877",null,"MFS-type transporter Rv1877 family ","Bacterioferritin (EC 1.16.3.1)","Glutamine synthetase-like protein","frameshift_variantHIGH"]
[7739,"NC_000962",2126617,"CTA","CA","1971.6","62.0","0.91","Deletion","acctac","acCAc","646delT","Tyr216fs","yes","fig|83332.12.peg.2094","Rv1877",null,"MFS-type transporter Rv1877 family ","Bacterioferritin (EC 1.16.3.1)","Glutamine synthetase-like protein","frameshift_variantMODERATE"]
["G01498","NC_000962",2128372,"A","G","2006.16","66.0","0.97","Synon","aca","acG","351A>G","Thr117Thr",null,"fig|83332.12.peg.2095","Rv1878","glnA3","Glutamine synthetase-like protein","MFS-type transporter Rv1877 family ","Amidohydrolase","synonymous_variantLOW"]
["G01491","NC_000962",2128870,"A","G","3499.26","111.0","0.98","Synon","cta","ctG","849A>G","Leu283Leu",null,"fig|83332.12.peg.2095","Rv1878","glnA3","Glutamine synthetase-like protein","MFS-type transporter Rv1877 family ","Amidohydrolase","synonymous_variantLOW"]
[54,"NC_000962",2128870,"A","G",{"v":381735,"d":"381,735"},"14.0","1.00","Synon","cta","ctG","849A>G","Leu283Leu",null,"fig|83332.12.peg.2095","Rv1878","glnA3","Glutamine synthetase-like protein","MFS-type transporter Rv1877 family ","Amidohydrolase","synonymous_variantLOW"]
["MP2","NC_000962",2129281,"C","A","7949.02","236.0","0.99","Synon","gcc","gcA","1260C>A","Ala420Ala",null,"fig|83332.12.peg.2095","Rv1878","glnA3","Glutamine synthetase-like protein","MFS-type transporter Rv1877 family ","Amidohydrolase","synonymous_variantLOW"]
[58,"NC_000962",2130529,"A","G","1423.72","44.0","1.00",{"$nulls":10},"Amidohydrolase","Cytochrome P450 140","intergenic_regionMODIFIER"]
[7011,"NC_000962",2135870,"T","C","3396.8","106.0","1.00",{"$nulls":10},"Antigen 85-B precursor (85B) @ Mycolyl transferase 85B (EC 2.3.1.20)","putative membrane protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",2135870,"T","C","2939.65","91.0","1.00",{"$nulls":10},"Antigen 85-B precursor (85B) @ Mycolyl transferase 85B (EC 2.3.1.20)","putative membrane protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",2136745,"G","A","6888.72","207.0","1.00","Nonsyn","tgg","tAg","404G>A","TrMP135*",null,"fig|83332.12.peg.2104","Rv1887",null,"putative membrane protein","Antigen 85-B precursor (85B) @ Mycolyl transferase 85B (EC 2.3.1.20)","hypothetical protein","stop_gainedHIGH"]
["G01492","NC_000962",2137267,"C","T","11263.0","364.0","0.98","Nonsyn","acg","aTg","926C>T","Thr309Met",null,"fig|83332.12.peg.2104","Rv1887",null,"putative membrane protein","Antigen 85-B precursor (85B) @ Mycolyl transferase 85B (EC 2.3.1.20)","hypothetical protein","missense_variantLOW"]
["G01222","NC_000962",2143328,"G","C",{"v":752708,"d":"752,708"},"23.0","1.00","Nonsyn","gtg","Ctg","808G>C","Val270Leu",null,"fig|83332.12.peg.2117","Rv1895",null,"Threonine dehydrogenase and related Zn-dependent dehydrogenases","hypothetical protein","O-methyltransferase","missense_variantMODERATE"]
["MP1","NC_000962",2143328,"G","C","9993.52","293.0","1.00","Nonsyn","gtg","Ctg","808G>C","Val270Leu",null,"fig|83332.12.peg.2117","Rv1895",null,"Threonine dehydrogenase and related Zn-dependent dehydrogenases","hypothetical protein","O-methyltransferase","missense_variantMODERATE"]
[64,"NC_000962",2143523,"CTA","CTTA","1268.71","40.0","1.00","Insertion","ctaagg","CTTAagg","1005_1006insT","Leu335_Arg336fs","yes","fig|83332.12.peg.2117","Rv1895",null,"Threonine dehydrogenase and related Zn-dependent dehydrogenases","hypothetical protein","O-methyltransferase","frameshift_variantHIGH"]
[7739,"NC_000962",2145878,"A","G","1866.56","60.0","1.00",{"$nulls":10},"Lipoprotein LppD","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",2147022,"A","C","3832.03","120.0","0.99","Nonsyn","att","atG","561T>G","Ile187Met",null,"fig|83332.12.peg.2123","Rv1900c","lipJ","lignin peroxidase LipJ","hypothetical protein","ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13) / Nicotinamide-nucleotide amidase (EC 3.5.1.42)","missense_variantMODERATE"]
[7011,"NC_000962",2147022,"A","C","2176.87","69.0","1.00","Nonsyn","att","atG","561T>G","Ile187Met",null,"fig|83332.12.peg.2123","Rv1900c","lipJ","lignin peroxidase LipJ","hypothetical protein","ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13) / Nicotinamide-nucleotide amidase (EC 3.5.1.42)","missense_variantMODERATE"]
["G01492","NC_000962",2151678,"G","T","11025.9","354.0","0.97","Nonsyn","ccc","Acc","718C>A","Pro240Thr",null,"fig|83332.12.peg.2128","Rv1905c","aao","D-amino-acid oxidase (EC 1.4.3.3)","Anti-sigma B factor antagonist RsbV","FIG00823749: hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",2154724,"C","A",{"v":820232,"d":"820,232"},"27.0","1.00","Nonsyn","cgg","cTg","1388G>T","Arg463Leu",null,"fig|83332.12.peg.2132","Rv1908c","katG","Catalase-peroxidase KatG (EC 1.11.1.21)","hypothetical protein","Transcriptional regulator, Fur family","missense_variantMODERATE"]
["MP1","NC_000962",2154724,"C","A","7125.87","209.0","1.00","Nonsyn","cgg","cTg","1388G>T","Arg463Leu",null,"fig|83332.12.peg.2132","Rv1908c","katG","Catalase-peroxidase KatG (EC 1.11.1.21)","hypothetical protein","Transcriptional regulator, Fur family","missense_variantMODERATE"]
[7739,"NC_000962",2155503,"G","A","2874.64","89.0","0.99","Synon","acc","acT","609C>T","Thr203Thr",null,"fig|83332.12.peg.2132","Rv1908c","katG","Catalase-peroxidase KatG (EC 1.11.1.21)","hypothetical protein","Transcriptional regulator, Fur family","synonymous_variantLOW"]
[58,"NC_000962",2156056,"C","A","2362.8","72.0","1.00","Nonsyn","ggc","gTc","56G>T","Gly19Val",null,"fig|83332.12.peg.2132","Rv1908c","katG","Catalase-peroxidase KatG (EC 1.11.1.21)","hypothetical protein","Transcriptional regulator, Fur family","missense_variantMODERATE"]
[7011,"NC_000962",2156868,"G","T","1508.13","69.0","0.99","Synon","ggc","ggA","444C>A","Gly148Gly",null,"fig|83332.12.peg.2134","Rv1910c",null,"Phosphatidylethanolamine-binding protein","Transcriptional regulator, Fur family","Phosphatidylethanolamine-binding protein","synonymous_variantLOW"]
["G01492","NC_000962",2158109,"T","C","8721.59","272.0","0.99","Nonsyn","gac","gGc","983A>G","Asp328Gly",null,"fig|83332.12.peg.2136","Rv1912c","fadB5","Oxidoreductase FadB5","Phosphatidylethanolamine-binding protein","MBL-fold metallo-hydrolase superfamily","missense_variantMODERATE"]
["G01498","NC_000962",2158109,"T","C","2068.06","64.0","1.00","Nonsyn","gac","gGc","983A>G","Asp328Gly",null,"fig|83332.12.peg.2136","Rv1912c","fadB5","Oxidoreductase FadB5","Phosphatidylethanolamine-binding protein","MBL-fold metallo-hydrolase superfamily","missense_variantMODERATE"]
["G01491","NC_000962",2160998,"G","A","4291.94","136.0","1.00","Nonsyn","ggc","gAc","536G>A","Gly179Asp",null,"fig|83332.12.peg.2139","Rv1915","aceAa","Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2","hypothetical protein","Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2","missense_variantMODERATE"]
[54,"NC_000962",2160998,"G","A","1062.2","41.0","0.93","Nonsyn","ggc","gAc","536G>A","Gly179Asp",null,"fig|83332.12.peg.2139","Rv1915","aceAa","Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2","hypothetical protein","Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2","missense_variantMODERATE"]
["MP2","NC_000962",2161343,"GTT","GTTT","6603.25","212.0","0.92","Insertion","cgtttt","cGTTTtt","884_885insT","Phe295_Thr296fs","yes","fig|83332.12.peg.2139","Rv1915","aceAa","Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2","hypothetical protein","Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2","frameshift_variantMODERATE"]
[58,"NC_000962",2165286,"A","C","2358.97","73.0","1.00","Nonsyn","tca","Gca","2059T>G","Ser687Ala",null,"fig|83332.12.peg.2141","Rv1917c","PPE34","PPE family protein, MPTR subgroup ","Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2","hypothetical protein","missense_variantLOW"]
[7011,"NC_000962",2167489,"T","C","1362.29","49.0","0.98",{"$nulls":10},"hypothetical protein","PPE family protein, MPTR subgroup ","intergenic_regionMODIFIER"]
["G01492","NC_000962",2167926,"A","G","7721.64","251.0","0.99","Nonsyn","ttg","tCg","2675T>C","Leu892Ser",null,"fig|83332.12.peg.2143","Rv1918c","PPE35","PPE family protein, MPTR subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2167926,"A","G","11554.1","359.0","0.99","Nonsyn","ttg","tCg","2675T>C","Leu892Ser",null,"fig|83332.12.peg.2143","Rv1918c","PPE35","PPE family protein, MPTR subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",2167946,"G","A","7169.61","239.0","0.97","Synon","aac","aaT","2655C>T","Asn885Asn",null,"fig|83332.12.peg.2143","Rv1918c","PPE35","PPE family protein, MPTR subgroup ","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",2168460,"T","C","1599.41","51.0","1.00","Nonsyn","aac","aGc","2141A>G","Asn714Ser",null,"fig|83332.12.peg.2143","Rv1918c","PPE35","PPE family protein, MPTR subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2168460,"T","C","6380.02","188.0","1.00","Nonsyn","aac","aGc","2141A>G","Asn714Ser",null,"fig|83332.12.peg.2143","Rv1918c","PPE35","PPE family protein, MPTR subgroup ","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",2172012,"G","C","3205.87","101.0","0.98","Nonsyn","atg","atC","390G>C","Met130Ile",null,"fig|83332.12.peg.2146","Rv1920",null,"Acyltransferase family protein","hypothetical protein","Lipoprotein LppF","missense_variantMODERATE"]
[7739,"NC_000962",2175390,"G","A","2571.12","90.0","1.00","Nonsyn","ggt","gAt","107G>A","Gly36Asp",null,"fig|83332.12.peg.2149","Rv1923","lipD","Putative esterase","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",2176254,"CTG","CG","1228.85","45.0","0.98","Deletion","cctggg","cCGgg","972delT","Pro324fs","yes","fig|83332.12.peg.2149","Rv1923","lipD","Putative esterase","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily","hypothetical protein","frameshift_variantHIGH"]
["G01491","NC_000962",2177071,"TGT","CGC","3262.93","103.0","0.98",{"$nulls":10},"hypothetical protein","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD31","intergenic_regionMODIFIER"]
[54,"NC_000962",2177071,"TGT","CGC","1379.95","43.0","0.98",{"$nulls":10},"hypothetical protein","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD31","intergenic_regionMODIFIER"]
["G01222","NC_000962",2177654,"A","C",{"v":833461,"d":"833,461"},"26.0","1.00","Nonsyn","atg","Ctg","568A>C","Met190Leu",null,"fig|83332.12.peg.2151","Rv1925","fadD31","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD31","hypothetical protein","Immunogenic protein MPT63/MPB63 precursor","missense_variantMODERATE"]
["MP1","NC_000962",2177654,"A","C","6066.88","179.0","1.00","Nonsyn","atg","Ctg","568A>C","Met190Leu",null,"fig|83332.12.peg.2151","Rv1925","fadD31","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD31","hypothetical protein","Immunogenic protein MPT63/MPB63 precursor","missense_variantMODERATE"]
[58,"NC_000962",2192626,"G","A","1191.41","39.0","0.97","Synon","cgg","cgA","21G>A","Arg7Arg",null,"fig|83332.12.peg.2168","Rv1940","ribA1","3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)","NADH-FMN oxidoreductase","Oxidoreductase, short-chain dehydrogenase/reductase family","synonymous_variantLOW"]
[58,"NC_000962",2197176,"G","A",{"v":365576,"d":"365,576"},"19.0","1.00","Synon","acg","acA","1188G>A","Thr396Thr",null,"fig|83332.12.peg.2173","Rv1945",null,"13E12 repeat family protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",2199052,"C","G","3382.03","104.0","0.99","Nonsyn","ggt","Cgt","13G>C","Gly5Arg",null,"fig|83332.12.peg.2177","Rv1948c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",2199416,"A","G","9206.72","298.0","0.99","Nonsyn","ttt","Ctt","562T>C","Phe188Leu",null,"fig|83332.12.peg.2178","Rv1949c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantLOW"]
["G01222","NC_000962",2207591,"TT","TCT",{"v":627956,"d":"627,956"},"21.0","1.00","Insertion",{"$nulls":9},"hypothetical protein","Conserved hypothetical integral membrane protein YrbEa","intergenic_regionMODIFIER"]
["MP1","NC_000962",2207591,"TT","TCT","7008.01","211.0","0.95","Insertion",{"$nulls":9},"hypothetical protein","Conserved hypothetical integral membrane protein YrbEa","intergenic_regionMODIFIER"]
[54,"NC_000962",2207591,"TT","TCT",{"v":828581,"d":"828,581"},"29.0","0.91","Insertion",{"$nulls":9},"hypothetical protein","Conserved hypothetical integral membrane protein YrbEa","intergenic_regionMODIFIER"]
["MP2","NC_000962",2223293,"T","C","6310.59","187.0","0.99",{"$nulls":10},"Uncharacterized amino acid permease, GabP family","hypothetical protein","intergenic_regionMODIFIER"]
[58,"NC_000962",2225175,"A","C","1114.51","38.0","0.97","Nonsyn","ctc","cGc","14T>G","Leu5Arg",null,"fig|83332.12.peg.2211","Rv1981c","nrdF1","Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)","hypothetical protein","toxin VapC36 @ Toxin 1, PIN domain","missense_variantMODERATE"]
[7011,"NC_000962",2225306,"G","A","2862.42","88.0","0.99",{"$nulls":10},"Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)","toxin VapC36 @ Toxin 1, PIN domain","intergenic_regionMODIFIER"]
["G01492","NC_000962",2228967,"A","G","7831.08","250.0","1.00",{"$nulls":10},"hypothetical protein","Transcriptional regulator ArgP, LysR family","intergenic_regionMODIFIER"]
[58,"NC_000962",2228967,"A","G","5412.78","170.0","0.97",{"$nulls":10},"hypothetical protein","Transcriptional regulator ArgP, LysR family","intergenic_regionMODIFIER"]
[54,"NC_000962",2229801,"C","G","3822.04","121.0","0.99","Synon","ccg","ccC","102G>C","Pro34Pro",null,"fig|83332.12.peg.2217","Rv1985c",null,"Transcriptional regulator ArgP, LysR family","hypothetical protein","Arginine exporter protein ArgO","synonymous_variantLOW"]
["MP2","NC_000962",2231486,"A","G","7285.54","217.0","1.00",{"$nulls":10},"hypothetical protein","23S rRNA (adenine(2058)-N(6))-dimethyltransferase (EC 2.1.1.184) ","intergenic_regionMODIFIER"]
["MP1","NC_000962",2231486,"A","G","8903.52","261.0","1.00",{"$nulls":10},"hypothetical protein","23S rRNA (adenine(2058)-N(6))-dimethyltransferase (EC 2.1.1.184) ","intergenic_regionMODIFIER"]
[64,"NC_000962",2241321,"T","G",{"v":426273,"d":"426,273"},"5.0","0.71","Nonsyn","ctg","cGg","1151T>G","Leu384Arg",null,"fig|83332.12.peg.2231","Rv1997","ctpF","Cation-transporting ATPase, E1-E2 family","Universal stress protein family","PEP phosphonomutase and related enzymes","missense_variantMODERATE"]
[7739,"NC_000962",2241742,"A","G","2222.59","71.0","0.99","Synon","cca","ccG","1572A>G","Pro524Pro",null,"fig|83332.12.peg.2231","Rv1997","ctpF","Cation-transporting ATPase, E1-E2 family","Universal stress protein family","PEP phosphonomutase and related enzymes","synonymous_variantMODERATE"]
["G01498","NC_000962",2243186,"A","C","1271.11","50.0","0.86","Nonsyn","ctc","cGc","536T>G","Leu179Arg",null,"fig|83332.12.peg.2232","Rv1998c",null,"PEP phosphonomutase and related enzymes","Cation-transporting ATPase, E1-E2 family","Uncharacterized transporter Rv1999c/MT2055","missense_variantMODERATE"]
["G01491","NC_000962",2244343,"G","T","5885.71","188.0","0.98","Synon","cgg","Agg","736C>A","Arg246Arg",null,"fig|83332.12.peg.2233","Rv1999c",null,"Uncharacterized transporter Rv1999c/MT2055","PEP phosphonomutase and related enzymes","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",2244343,"G","T","2027.04","68.0","1.00","Synon","cgg","Agg","736C>A","Arg246Arg",null,"fig|83332.12.peg.2233","Rv1999c",null,"Uncharacterized transporter Rv1999c/MT2055","PEP phosphonomutase and related enzymes","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",2246960,"G","C","7756.82","231.0","1.00","Synon","gtg","gtC","129G>C","Val43Val",null,"fig|83332.12.peg.2235","Rv2001",null,"hypothetical protein","hypothetical protein","3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase (EC 1.1.1.53)","synonymous_variantLOW"]
[58,"NC_000962",2247677,"A","C","7069.42","213.0","0.98","Synon","ata","atC","72A>C","Ile24Ile",null,"fig|83332.12.peg.2236","Rv2002","fabG3","3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase (EC 1.1.1.53)","hypothetical protein","Methyltransferase type 11","synonymous_variantLOW"]
["G01222","NC_000962",2251999,"A","G",{"v":707993,"d":"707,993"},"22.0","1.00",{"$nulls":10},"Universal stress protein family","Not trehalose-6-phosphate phosphatase","intergenic_regionMODIFIER"]
[58,"NC_000962",2251999,"A","G","1555.79","50.0","0.98",{"$nulls":10},"Universal stress protein family","Not trehalose-6-phosphate phosphatase","intergenic_regionMODIFIER"]
[7011,"NC_000962",2253099,"A","C","2649.14","84.0","1.00","Synon","gca","gcC","1098A>C","Ala366Ala",null,"fig|83332.12.peg.2241","Rv2006","otsB1","Not trehalose-6-phosphate phosphatase","Universal stress protein family","4Fe-4S ferredoxin, iron-sulfur binding","synonymous_variantLOW"]
["G01492","NC_000962",2258216,"A","G","8672.93","274.0","0.98","Nonsyn","aac","Gac","172A>G","Asn58Asp",null,"fig|83332.12.peg.2244","Rv2009",null,"antitoxin VapB15 @ Antitoxin to Toxin 1, PIN domain","ATPase, AAA family","toxin VapC15 @ Toxin 1, PIN domain","missense_variantMODERATE"]
["G01222","NC_000962",2260100,"C","T",{"v":976366,"d":"976,366"},"33.0","1.00",{"$nulls":10},"hypothetical protein","Transposase","intergenic_regionMODIFIER"]
["MP1","NC_000962",2260100,"C","T","7463.72","223.0","1.00",{"$nulls":10},"hypothetical protein","Transposase","intergenic_regionMODIFIER"]
[64,"NC_000962",2260525,"C","T","3042.7","100.0","0.99",{"$nulls":10},"hypothetical protein","Transposase","intergenic_regionMODIFIER"]
[7739,"NC_000962",2261241,"A","G","2788.65","87.0","1.00","Synon","gaa","gaG","144A>G","Glu48Glu",null,"fig|83332.12.peg.2250","Rv2014",null,"Transposase","Transposase","HNH endonuclease domain protein","synonymous_variantLOW"]
[58,"NC_000962",2261241,"A","G","5419.82","175.0","0.98","Synon","gaa","gaG","144A>G","Glu48Glu",null,"fig|83332.12.peg.2250","Rv2014",null,"Transposase","Transposase","HNH endonuclease domain protein","synonymous_variantLOW"]
[7011,"NC_000962",2261693,"G","C","2438.02","77.0","1.00",{"$nulls":10},"Transposase","HNH endonuclease domain protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",2264782,"C","A","8394.85","280.0","0.96","Nonsyn","gcg","gAg","785C>A","Ala262Glu",null,"fig|83332.12.peg.2253","Rv2017",null,"Zn peptidase with DNA binding","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",2265059,"T","G","3030.79","95.0","0.99",{"$nulls":10},"Zn peptidase with DNA binding","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",2265059,"T","G","4455.0","139.0","0.97",{"$nulls":10},"Zn peptidase with DNA binding","hypothetical protein","intergenic_regionMODERATE"]
["MP2","NC_000962",2267976,"G","T","5446.48","157.0","1.00","Synon","cgg","Agg","82C>A","Arg28Arg",null,"fig|83332.12.peg.2259","Rv2023c",null,"hypothetical protein","Toxin HigB","Putative helicase","synonymous_variantLOW"]
[58,"NC_000962",2269376,"G","A",{"v":175985,"d":"175,985"},"6.0","1.00","Nonsyn","cgc","Tgc","856C>T","Arg286Cys",null,"fig|83332.12.peg.2260","Rv2024c",null,"Putative helicase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",2269780,"T","C","2986.25","95.0","1.00","Nonsyn","gac","gGc","452A>G","AsMP151Gly",null,"fig|83332.12.peg.2260","Rv2024c",null,"Putative helicase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",2269780,"T","C","2671.79","84.0","1.00","Nonsyn","gac","gGc","452A>G","AsMP151Gly",null,"fig|83332.12.peg.2260","Rv2024c",null,"Putative helicase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",2270102,"A","G","3029.01","97.0","1.00","Nonsyn","tgg","Cgg","130T>C","Trp44Arg",null,"fig|83332.12.peg.2260","Rv2024c",null,"Putative helicase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",2273441,"G","T","3590.26","119.0","0.95","Synon","gcc","gcA","1023C>A","Ala341Ala",null,"fig|83332.12.peg.2265","Rv2027c",null,"Two component system sensor histidine kinase DevS","Universal stress protein family","Universal stress protein family","synonymous_variantLOW"]
[54,"NC_000962",2273441,"G","T","3967.54","133.0","0.99","Synon","gcc","gcA","1023C>A","Ala341Ala",null,"fig|83332.12.peg.2265","Rv2027c",null,"Two component system sensor histidine kinase DevS","Universal stress protein family","Universal stress protein family","synonymous_variantLOW"]
["MP2","NC_000962",2274463,"A","C","7172.4","209.0","1.00","Nonsyn","ttg","Gtg","1T>G","Leu1Val",null,"fig|83332.12.peg.2265","Rv2027c",null,"Two component system sensor histidine kinase DevS","Universal stress protein family","Universal stress protein family","missense_variantHIGH"]
[58,"NC_000962",2282376,"CC","TT","583.8","18.0","1.00","Nonsyn","gcc","gTT","278CC>TT","Ala93Val",null,"fig|83332.12.peg.2275","Rv2036",null,"hypothetical protein","Ligand-binding SRPBCC domain CalC","lysophospholipase-like family protein","missense_variantMODERATE"]
["G01491","NC_000962",2282787,"C","T","3934.14","125.0","0.99","Nonsyn","tgt","tAt","857G>A","Cys286Tyr",null,"fig|83332.12.peg.2276","Rv2037c",null,"lysophospholipase-like family protein","hypothetical protein","N-Acetyl-D-glucosamine ABC transport system, ATP-binding protein","missense_variantMODERATE"]
["G01498","NC_000962",2285251,"C","A","1442.62","45.0","0.98","Nonsyn","gtc","Ttc","391G>T","Val131Phe",null,"fig|83332.12.peg.2278","Rv2039c",null,"N-acetyl-D-glucosamine ABC transporter, permease protein 2","N-Acetyl-D-glucosamine ABC transport system, ATP-binding protein","N-acetyl-D-glucosamine ABC transporter, permease protein 1","missense_variantMODERATE"]
[7011,"NC_000962",2285251,"C","A","3155.88","98.0","1.00","Nonsyn","gtc","Ttc","391G>T","Val131Phe",null,"fig|83332.12.peg.2278","Rv2039c",null,"N-acetyl-D-glucosamine ABC transporter, permease protein 2","N-Acetyl-D-glucosamine ABC transport system, ATP-binding protein","N-acetyl-D-glucosamine ABC transporter, permease protein 1","missense_variantMODERATE"]
["G01492","NC_000962",2286387,"C","T","9217.49","310.0","0.97","Synon","gcg","gcA","105G>A","Ala35Ala",null,"fig|83332.12.peg.2279","Rv2040c",null,"N-acetyl-D-glucosamine ABC transporter, permease protein 1","N-acetyl-D-glucosamine ABC transporter, permease protein 2","N-acetyl-D-glucosamine ABC transporter, substrate-binding protein","synonymous_variantLOW"]
["G01222","NC_000962",2286850,"G","T",{"v":674575,"d":"674,575"},"25.0","1.00","Nonsyn","cgc","Agc","841C>A","Arg281Ser",null,"fig|83332.12.peg.2280","Rv2041c",null,"N-acetyl-D-glucosamine ABC transporter, substrate-binding protein","N-acetyl-D-glucosamine ABC transporter, permease protein 1","Putative uncharacterized protein BCG_2061c","missense_variantMODERATE"]
["MP1","NC_000962",2286850,"G","T","6639.04","204.0","0.99","Nonsyn","cgc","Agc","841C>A","Arg281Ser",null,"fig|83332.12.peg.2280","Rv2041c",null,"N-acetyl-D-glucosamine ABC transporter, substrate-binding protein","N-acetyl-D-glucosamine ABC transporter, permease protein 1","Putative uncharacterized protein BCG_2061c","missense_variantMODERATE"]
[64,"NC_000962",2287121,"A","G","2436.28","80.0","0.96","Synon","gat","gaC","570T>C","AsMP190Asp",null,"fig|83332.12.peg.2280","Rv2041c",null,"N-acetyl-D-glucosamine ABC transporter, substrate-binding protein","N-acetyl-D-glucosamine ABC transporter, permease protein 1","Putative uncharacterized protein BCG_2061c","synonymous_variantLOW"]
[7739,"NC_000962",2290749,"G","A","1937.7","65.0","0.97","Synon","ctg","Ttg","442C>T","Leu148Leu",null,"fig|83332.12.peg.2284","Rv2045c","lipT","Probable carboxylesterase LipT (EC 3.1.1.-)","putative membrane protein","Probable lipoprotein lppI","synonymous_variantLOW"]
["G01498","NC_000962",2296042,"G","C","2102.37","66.0","0.97","Nonsyn","ccg","Gcg","10945C>G","Pro3649Ala",null,"fig|83332.12.peg.2287","Rv2048c","pks12","Modular polyketide synthase","Phosphoenolpyruvate synthase (EC 2.7.9.2)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",2297976,"G","A","6823.46","213.0","1.00","Nonsyn","tca","tTa","9011C>T","Ser3004Leu",null,"fig|83332.12.peg.2287","Rv2048c","pks12","Modular polyketide synthase","Phosphoenolpyruvate synthase (EC 2.7.9.2)","hypothetical protein","missense_variantLOW"]
[58,"NC_000962",2297976,"G","A","2287.14","74.0","1.00","Nonsyn","tca","tTa","9011C>T","Ser3004Leu",null,"fig|83332.12.peg.2287","Rv2048c","pks12","Modular polyketide synthase","Phosphoenolpyruvate synthase (EC 2.7.9.2)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",2301089,"T","C","6400.1","202.0","0.99","Synon","cta","ctG","5898A>G","Leu1966Leu",null,"fig|83332.12.peg.2287","Rv2048c","pks12","Modular polyketide synthase","Phosphoenolpyruvate synthase (EC 2.7.9.2)","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",2301089,"T","C","16376.4","514.0","0.96","Synon","cta","ctG","5898A>G","Leu1966Leu",null,"fig|83332.12.peg.2287","Rv2048c","pks12","Modular polyketide synthase","Phosphoenolpyruvate synthase (EC 2.7.9.2)","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",2313267,"G","A","5306.96","155.0","0.99","Nonsyn","cgt","cAt","143G>A","Arg48His",null,"fig|83332.12.peg.2293","Rv2054",null,"Dienelactone hydrolase family protein","Cytoplasmic membrane protein FsxA","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",2316624,"G","A","1709.27","57.0","0.98","Nonsyn","ggc","gAc","1166G>A","Gly389Asp",null,"fig|83332.12.peg.2300","Rv2059",null,"Zinc ABC transporter, substrate-binding protein ZnuA","hypothetical protein","F420-dependent enzyme Rv2061c","missense_variantMODERATE"]
[7011,"NC_000962",2319043,"C","A","2660.87","92.0","1.00","Nonsyn","gcg","Tcg","1711G>T","Ala571Ser",null,"fig|83332.12.peg.2302","Rv2062c","cobN","Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2)","F420-dependent enzyme Rv2061c","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",2323602,"C","A","9177.92","311.0","0.95","Nonsyn","tcg","tAg","428C>A","Ser143*",null,"fig|83332.12.peg.2307","Rv2066","cobI","Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) / Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131)","Precorrin-8X methylmutase (EC 5.4.99.61)","SAM-dependent methyltransferase","stop_gainedHIGH"]
["G01222","NC_000962",2325725,"G","A",{"v":395861,"d":"395,861"},"12.0","1.00","Nonsyn","ccg","cTg","146C>T","Pro49Leu",null,"fig|83332.12.peg.2308","Rv2067c",null,"SAM-dependent methyltransferase","Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) / Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131)","Class A beta-lactamase (EC 3.5.2.6)","missense_variantMODERATE"]
["G01491","NC_000962",2325725,"G","A","3533.46","114.0","0.96","Nonsyn","ccg","cTg","146C>T","Pro49Leu",null,"fig|83332.12.peg.2308","Rv2067c",null,"SAM-dependent methyltransferase","Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) / Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131)","Class A beta-lactamase (EC 3.5.2.6)","missense_variantMODERATE"]
[54,"NC_000962",2325725,"G","A","2064.19","63.0","1.00","Nonsyn","ccg","cTg","146C>T","Pro49Leu",null,"fig|83332.12.peg.2308","Rv2067c",null,"SAM-dependent methyltransferase","Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) / Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131)","Class A beta-lactamase (EC 3.5.2.6)","missense_variantMODERATE"]
["MP2","NC_000962",2328163,"GTG","GTTG","5689.94","175.0","0.92","Insertion","caccca","CAACcca","61_62insA","His21_Pro22fs","yes","fig|83332.12.peg.2312","Rv2070c","cobK","Precorrin-6A reductase (EC 1.3.1.54)","RNA polymerase ECF-type sigma factor","Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133)","frameshift_variantHIGH"]
["G01222","NC_000962",2328627,"C","T",{"v":939561,"d":"939,561"},"30.0","1.00","Synon","gcg","gcA","369G>A","Ala123Ala",null,"fig|83332.12.peg.2313","Rv2071c","cobM","Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133)","Precorrin-6A reductase (EC 1.3.1.54)","Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132)","synonymous_variantLOW"]
[7739,"NC_000962",2328627,"C","T","2587.71","85.0","0.98","Synon","gcg","gcA","369G>A","Ala123Ala",null,"fig|83332.12.peg.2313","Rv2071c","cobM","Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133)","Precorrin-6A reductase (EC 1.3.1.54)","Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132)","synonymous_variantLOW"]
["G01498","NC_000962",2329466,"C","T","2113.41","73.0","1.00","Synon","ccg","ccA","681G>A","Pro227Pro",null,"fig|83332.12.peg.2314","Rv2072c","cobL","Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132)","Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133)","Oxidoreductase, short-chain dehydrogenase/reductase family","synonymous_variantLOW"]
["G01491","NC_000962",2329533,"A","G","5295.23","164.0","0.99","Nonsyn","ctc","cCc","614T>C","Leu205Pro",null,"fig|83332.12.peg.2314","Rv2072c","cobL","Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132)","Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133)","Oxidoreductase, short-chain dehydrogenase/reductase family","missense_variantMODERATE"]
[54,"NC_000962",2329533,"A","G",{"v":547623,"d":"547,623"},"21.0","1.00","Nonsyn","ctc","cCc","614T>C","Leu205Pro",null,"fig|83332.12.peg.2314","Rv2072c","cobL","Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132)","Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133)","Oxidoreductase, short-chain dehydrogenase/reductase family","missense_variantMODERATE"]
["G01222","NC_000962",2334007,"A","G",{"v":978094,"d":"978,094"},"30.0","1.00","Synon","gct","gcC","288T>C","Ala96Ala",null,"fig|83332.12.peg.2319","Rv2077c",null,"putative membrane protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",2334007,"A","G","7528.36","220.0","1.00","Synon","gct","gcC","288T>C","Ala96Ala",null,"fig|83332.12.peg.2319","Rv2077c",null,"putative membrane protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",2335075,"A","G","2922.95","88.0","0.99","Nonsyn","gaa","gGa","17A>G","Glu6Gly",null,"fig|83332.12.peg.2322","Rv2078",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",2335494,"A","G","2316.36","84.0","0.99","Nonsyn","tac","tGc","140A>G","Tyr47Cys",null,"fig|83332.12.peg.2323","Rv2079",null,"hypothetical protein","hypothetical protein","Possible lipoprotein LppJ","missense_variantMODERATE"]
["G01498","NC_000962",2336410,"C","A","1737.87","59.0","0.91","Synon","gcc","gcA","1056C>A","Ala352Ala",null,"fig|83332.12.peg.2323","Rv2079",null,"hypothetical protein","hypothetical protein","Possible lipoprotein LppJ","synonymous_variantLOW"]
["G01491","NC_000962",2337373,"T","C","4107.84","136.0","0.99","Nonsyn","gtg","gCg","68T>C","Val23Ala",null,"fig|83332.12.peg.2324","Rv2080","lppJ","Possible lipoprotein LppJ","hypothetical protein","Vegetative cell wall protein gMP1 precursor","missense_variantMODERATE"]
[64,"NC_000962",2337373,"T","C",{"v":900421,"d":"900,421"},"44.0","0.75","Nonsyn","gtg","gCg","68T>C","Val23Ala",null,"fig|83332.12.peg.2324","Rv2080","lppJ","Possible lipoprotein LppJ","hypothetical protein","Vegetative cell wall protein gMP1 precursor","missense_variantMODERATE"]
["MP1","NC_000962",2340621,"C","G","8652.09","270.0","0.99","Nonsyn","ccc","cGc","1913C>G","Pro638Arg",null,"fig|83332.12.peg.2327","Rv2082",null,"Vegetative cell wall protein gMP1 precursor","putative membrane protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2340621,"C","G","7347.55","248.0","0.97","Nonsyn","ccc","cGc","1913C>G","Pro638Arg",null,"fig|83332.12.peg.2327","Rv2082",null,"Vegetative cell wall protein gMP1 precursor","putative membrane protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",2341030,"G","A","7118.58","207.0","1.00","Nonsyn","gcg","Acg","160G>A","Ala54Thr",null,"fig|83332.12.peg.2328","Rv2083",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",2341636,"C","G",{"v":913046,"d":"913,046"},"34.0","0.94","Nonsyn","ctg","Gtg","766C>G","Leu256Val",null,"fig|83332.12.peg.2328","Rv2083",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",2345037,"C","A","3416.92","109.0","1.00","Synon","ctc","ctA","627C>A","Leu209Leu",null,"fig|83332.12.peg.2333","Rv2088","pknJ","AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination","hypothetical protein","Probable dipeptidase PepE (EC 3.4.13.-)","synonymous_variantMODERATE"]
["G01492","NC_000962",2348446,"C","G","7243.39","236.0","0.99","Nonsyn","ttc","ttG","813C>G","Phe271Leu",null,"fig|83332.12.peg.2336","Rv2090",null,"DNA polymerase I 5'-3' exonuclease domain","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
["G01222","NC_000962",2349140,"C","T",{"v":667459,"d":"667,459"},"21.0","1.00","Synon","ccg","ccA","153G>A","Pro51Pro",null,"fig|83332.12.peg.2337","Rv2091c",null,"putative membrane protein","DNA polymerase I 5'-3' exonuclease domain","FIG005666: putative helicase","synonymous_variantLOW"]
["MP1","NC_000962",2349140,"C","T","6363.33","191.0","0.99","Synon","ccg","ccA","153G>A","Pro51Pro",null,"fig|83332.12.peg.2337","Rv2091c",null,"putative membrane protein","DNA polymerase I 5'-3' exonuclease domain","FIG005666: putative helicase","synonymous_variantLOW"]
[64,"NC_000962",2351522,"G","A","1173.32","40.0","1.00","Nonsyn","acg","aTg","533C>T","Thr178Met",null,"fig|83332.12.peg.2338","Rv2092c","helY","FIG005666: putative helicase","putative membrane protein","Twin-arginine translocation protein TatC","missense_variantLOW"]
["MP2","NC_000962",2351522,"G","A","6189.6","181.0","0.99","Nonsyn","acg","aTg","533C>T","Thr178Met",null,"fig|83332.12.peg.2338","Rv2092c","helY","FIG005666: putative helicase","putative membrane protein","Twin-arginine translocation protein TatC","missense_variantLOW"]
[64,"NC_000962",2358029,"TGG","TGGG","1141.54","52.0","0.67","Insertion","gccaga","gCCCAga","175_176insC","Ala59_Arg60fs","yes","fig|83332.12.peg.2345",null,null,"PE family protein ","PE_PGRS family protein ","13E12 repeat family protein, HNH endonuclease domain","frameshift_variantHIGH"]
[7739,"NC_000962",2361604,"C","G","1974.56","72.0","1.00","Synon","gtc","gtG","1365C>G","Val455Val",null,"fig|83332.12.peg.2347","Rv2101","helZ","Helicase, SNF2/RAD54 family","13E12 repeat family protein, HNH endonuclease domain","SWF/SNF family helicase Rv2102","synonymous_variantLOW"]
["G01498","NC_000962",2361623,"A","C","2782.44","91.0","1.00","Nonsyn","atg","Ctg","1384A>C","Met462Leu",null,"fig|83332.12.peg.2347","Rv2101","helZ","Helicase, SNF2/RAD54 family","13E12 repeat family protein, HNH endonuclease domain","SWF/SNF family helicase Rv2102","missense_variantMODERATE"]
["G01491","NC_000962",2362041,"C","A","4911.28","154.0","0.99","Nonsyn","ccg","cAg","1802C>A","Pro601Gln",null,"fig|83332.12.peg.2347","Rv2101","helZ","Helicase, SNF2/RAD54 family","13E12 repeat family protein, HNH endonuclease domain","SWF/SNF family helicase Rv2102","missense_variantMODERATE"]
[54,"NC_000962",2362041,"C","A","3032.94","93.0","0.99","Nonsyn","ccg","cAg","1802C>A","Pro601Gln",null,"fig|83332.12.peg.2347","Rv2101","helZ","Helicase, SNF2/RAD54 family","13E12 repeat family protein, HNH endonuclease domain","SWF/SNF family helicase Rv2102","missense_variantMODERATE"]
["MP2","NC_000962",2364140,"A","C","7257.19","212.0","1.00","Nonsyn","agt","agG","381T>G","Ser127Arg",null,"fig|83332.12.peg.2349","Rv2103c",null,"toxin VapC37 @ Toxin 1, PIN domain","SWF/SNF family helicase Rv2102","antitoxin VapB37 @ Antitoxin to Toxin 1, PIN domain","missense_variantMODERATE"]
[58,"NC_000962",2365395,"CTTTTTTG","CTTTTTTTG","1864.83","61.0","1.00","Insertion",{"$nulls":9},"hypothetical protein","Insertion element IS6110 (Mycobacterium tuberculosis) transposase","intergenic_regionLOW"]
[64,"NC_000962",2365395,"CTTTTTTG","CTTTTTTTG",{"v":666998,"d":"666,998"},"25.0","0.83","Insertion",{"$nulls":9},"hypothetical protein","Insertion element IS6110 (Mycobacterium tuberculosis) transposase","intergenic_regionMODIFIER"]
[7739,"NC_000962",2368564,"TAA","TA","1807.22","67.0","0.94","Deletion",{"$nulls":9},"PPE family protein ","Proteasome subunit alpha (EC 3.4.25.1), bacterial","intergenic_regionMODIFIER"]
["G01498","NC_000962",2369186,"G","C","1629.88","53.0","0.98","Nonsyn","cgt","Ggt","544C>G","Arg182Gly",null,"fig|83332.12.peg.2356","Rv2109c","prcA","Proteasome subunit alpha (EC 3.4.25.1), bacterial","PPE family protein ","Proteasome subunit beta (EC 3.4.25.1), bacterial","missense_variantMODERATE"]
["G01491","NC_000962",2369326,"C","G","2752.86","88.0","1.00","Nonsyn","cgc","cCc","404G>C","Arg135Pro",null,"fig|83332.12.peg.2356","Rv2109c","prcA","Proteasome subunit alpha (EC 3.4.25.1), bacterial","PPE family protein ","Proteasome subunit beta (EC 3.4.25.1), bacterial","missense_variantMODERATE"]
["G01491","NC_000962",2373439,"C","A","4991.39","158.0","0.99","Nonsyn","aac","aaA","762C>A","Asn254Lys",null,"fig|83332.12.peg.2360","Rv2113",null,"putative membrane protein","Pup ligase PafA' paralog, possible component of postulated heterodimer PafA-PafA'","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2373439,"C","A","6808.51","202.0","1.00","Nonsyn","aac","aaA","762C>A","Asn254Lys",null,"fig|83332.12.peg.2360","Rv2113",null,"putative membrane protein","Pup ligase PafA' paralog, possible component of postulated heterodimer PafA-PafA'","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",2376425,"A","G","1816.2","58.0","0.97",{"$nulls":10},"Bacterial proteasome-activating AAA-ATPase (PAN)","Probable conserved lipoprotein lppK","intergenic_regionMODIFIER"]
[7739,"NC_000962",2379743,"C","G","2973.46","94.0","1.00",{"$nulls":10},"Hypothetical membrane protein Rv2120c","ATP phosphoribosyltransferase (EC 2.4.2.17) ","intergenic_regionMODERATE"]
[58,"NC_000962",2379743,"C","G","5823.96","172.0","1.00",{"$nulls":10},"Hypothetical membrane protein Rv2120c","ATP phosphoribosyltransferase (EC 2.4.2.17) ","intergenic_regionMODERATE"]
[7011,"NC_000962",2386389,"G","A","2660.93","83.0","1.00","Nonsyn","ggc","Agc","97G>A","Gly33Ser",null,"fig|83332.12.peg.2372","Rv2125",null,"hypothetical protein","5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)","PE_PGRS family protein ","missense_variantLOW"]
["G01492","NC_000962",2387733,"T","C","8532.05","290.0","0.99","Synon","gaa","gaG","240A>G","Glu80Glu",null,"fig|83332.12.peg.2373","Rv2126c","PE_PGRS37","PE_PGRS family protein ","hypothetical protein","PE family protein","synonymous_variantLOW"]
["G01222","NC_000962",2388641,"G","A","1162.76","36.0","1.00","Nonsyn","ggc","gAc","26G>A","Gly9Asp",null,"fig|83332.12.peg.2375","Rv2127","ansMP1","L-asparagine permease","PE family protein","putative membrane protein","missense_variantMODERATE"]
["MP1","NC_000962",2388641,"G","A","6672.29","196.0","1.00","Nonsyn","ggc","gAc","26G>A","Gly9Asp",null,"fig|83332.12.peg.2375","Rv2127","ansMP1","L-asparagine permease","PE family protein","putative membrane protein","missense_variantMODERATE"]
[64,"NC_000962",2390299,"A","G","8404.12","255.0","0.99",{"$nulls":10},"putative membrane protein","Oxidoreductase, short-chain dehydrogenase/reductase family","intergenic_regionMODIFIER"]
[7739,"NC_000962",2396773,"C","T","3196.76","100.0","0.99","Synon","tcg","tcA","84G>A","Ser28Ser",null,"fig|83332.12.peg.2384","Rv2136c","uppP","Undecaprenyl-diphosphatase (EC 3.6.1.27)","Phosphoglycerate mutase family protein","FIG00821698: hypothetical protein","synonymous_variantMODIFIER"]
["MP2","NC_000962",2396773,"C","T","6745.04","202.0","1.00","Synon","tcg","tcA","84G>A","Ser28Ser",null,"fig|83332.12.peg.2384","Rv2136c","uppP","Undecaprenyl-diphosphatase (EC 3.6.1.27)","Phosphoglycerate mutase family protein","FIG00821698: hypothetical protein","synonymous_variantMODIFIER"]
[7739,"NC_000962",2398566,"T","C","2555.41","84.0","0.98","Nonsyn","cta","cCa","131T>C","Leu44Pro",null,"fig|83332.12.peg.2387",null,null,"Uncharacterized protein SCO1673","Lipoprotein LppL","Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2)","missense_variantMODERATE"]
["G01498","NC_000962",2400450,"C","G","2436.14","80.0","0.98","Nonsyn","gtc","Ctc","1273G>C","Val425Leu",null,"fig|83332.12.peg.2390","Rv2141c",null,"YscS-like amidohydrolase","Phospholipid-binding protein","tRNA-Leu-GAG","missense_variantMODERATE"]
["G01491","NC_000962",2402090,"A","C","2398.16","78.0","0.92",{"$nulls":10},"tRNA-Leu-GAG","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",2402090,"A","C","14814.7","436.0","0.98",{"$nulls":10},"tRNA-Leu-GAG","hypothetical protein","intergenic_regionMODERATE"]
["MP2","NC_000962",2413246,"C","A","3013.55","91.0","1.00","Nonsyn","gtg","Ttg","106G>T","Val36Leu",null,"fig|83332.12.peg.2404","Rv2153c","murG","UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)","UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)","Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129)","missense_variantMODERATE"]
[58,"NC_000962",2415351,"C","A","1233.85","39.0","1.00","Synon","gtg","gtT","1014G>T","Val338Val",null,"fig|83332.12.peg.2406","Rv2155c","murD","UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase (EC 6.3.2.9)","Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129)","Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)","synonymous_variantLOW"]
[7011,"NC_000962",2421816,"A","G","2454.14","80.0","0.98","Nonsyn","gtg","gCg","188T>C","Val63Ala",null,"fig|83332.12.peg.2411","Rv2160c",null,"Transcriptional regulator, AcrR family","hypothetical protein","Probable F420-dependent oxidoreductase family protein","missense_variantMODERATE"]
["G01492","NC_000962",2421975,"GC","GGGAAC","8699.34","304.0","0.98","Insertion","gccggc","GTTCCCcggc","28_29insTTCC","Ala10_Gly11fs","yes","fig|83332.12.peg.2411","Rv2160c",null,"Transcriptional regulator, AcrR family","hypothetical protein","Probable F420-dependent oxidoreductase family protein","frameshift_variantLOW"]
["G01498","NC_000962",2421975,"GC","GGGAAC","3608.73","125.0","0.97","Insertion","gccggc","GTTCCCcggc","28_29insTTCC","Ala10_Gly11fs","yes","fig|83332.12.peg.2411","Rv2160c",null,"Transcriptional regulator, AcrR family","hypothetical protein","Probable F420-dependent oxidoreductase family protein","frameshift_variantLOW"]
["G01491","NC_000962",2424864,"A","G","4440.19","145.0","1.00",{"$nulls":10},"PE_PGRS family protein ","Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)","intergenic_regionMODIFIER"]
["G01492","NC_000962",2424925,"A","G","13210.8","413.0","0.99",{"$nulls":10},"PE_PGRS family protein ","Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)","intergenic_regionMODIFIER"]
["MP1","NC_000962",2424925,"A","G","6112.91","176.0","1.00",{"$nulls":10},"PE_PGRS family protein ","Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)","intergenic_regionMODIFIER"]
[64,"NC_000962",2425471,"T","C","2171.46","65.0","0.98","Synon","cga","cgG","1398A>G","Arg466Arg",null,"fig|83332.12.peg.2414","Rv2163c","pbpB","Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)","PE_PGRS family protein ","Cell division protein FtsL / proline rich membrane protein","synonymous_variantMODIFIER"]
[7739,"NC_000962",2437259,"G","T","2085.93","68.0","1.00","Nonsyn","gca","Tca","1351G>T","Ala451Ser",null,"fig|83332.12.peg.2425","Rv2174",null,"Carotene biosynthesis associated membrane protein","Geranylgeranyl diphosphate synthase (EC 2.5.1.29)","Uncharacterized protein Rv2175c","missense_variantMODERATE"]
["G01498","NC_000962",2437837,"G","A","2171.8","76.0","0.96","Nonsyn","ccc","cTc","14C>T","Pro5Leu",null,"fig|83332.12.peg.2426","Rv2175c",null,"Uncharacterized protein Rv2175c","Carotene biosynthesis associated membrane protein","Serine/threonine protein kinase PknL (EC 2.7.11.1)","missense_variantMODERATE"]
["G01491","NC_000962",2438094,"T","G","6109.72","190.0","0.99","Nonsyn","tct","Gct","154T>G","Ser52Ala",null,"fig|83332.12.peg.2427","Rv2176","pknL","Serine/threonine protein kinase PknL (EC 2.7.11.1)","Uncharacterized protein Rv2175c","Mobile element protein","missense_variantMODERATE"]
["G01492","NC_000962",2438094,"T","G","12768.2","409.0","0.99","Nonsyn","tct","Gct","154T>G","Ser52Ala",null,"fig|83332.12.peg.2427","Rv2176","pknL","Serine/threonine protein kinase PknL (EC 2.7.11.1)","Uncharacterized protein Rv2175c","Mobile element protein","missense_variantMODERATE"]
["G01222","NC_000962",2440926,"G","T","1027.82","32.0","0.97","Nonsyn","gac","gaA","795C>A","AsMP265Glu",null,"fig|83332.12.peg.2429","Rv2178c","aroG","2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54)","Mobile element protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2440926,"G","T","7417.15","216.0","1.00","Nonsyn","gac","gaA","795C>A","AsMP265Glu",null,"fig|83332.12.peg.2429","Rv2178c","aroG","2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54)","Mobile element protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",2447426,"G","T","3831.24","118.0","0.99","Synon","atc","atA","75C>A","Ile25Ile",null,"fig|83332.12.peg.2436","Rv2185c","TB16.3","hypothetical protein","anion-transporting ATPase","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",2447539,"A","G","1771.42","60.0","0.98",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",2447539,"A","G","7543.19","216.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",2448598,"C","T","8576.86","276.0","0.99","Nonsyn","cag","Tag","448C>T","Gln150*",null,"fig|83332.12.peg.2438","Rv2187","fadD15","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD15","hypothetical protein","Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)","stop_gainedHIGH"]
["G01222","NC_000962",2449295,"G","A","1139.3","37.0","0.97","Nonsyn","ggg","gAg","1145G>A","Gly382Glu",null,"fig|83332.12.peg.2438","Rv2187","fadD15","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD15","hypothetical protein","Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)","missense_variantMODERATE"]
["G01491","NC_000962",2449295,"G","A","4898.01","153.0","1.00","Nonsyn","ggg","gAg","1145G>A","Gly382Glu",null,"fig|83332.12.peg.2438","Rv2187","fadD15","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD15","hypothetical protein","Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)","missense_variantMODERATE"]
[54,"NC_000962",2449295,"G","A","13113.6","405.0","1.00","Nonsyn","ggg","gAg","1145G>A","Gly382Glu",null,"fig|83332.12.peg.2438","Rv2187","fadD15","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD15","hypothetical protein","Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)","missense_variantLOW"]
["MP2","NC_000962",2461545,"C","A","4147.01","129.0","0.98","Nonsyn","gct","Tct","604G>T","Ala202Ser",null,"fig|83332.12.peg.2449","Rv2197c",null,"putative membrane protein","Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2)","Membrane protein MmpS3","missense_variantMODERATE"]
[58,"NC_000962",2462871,"G","A","3564.28","110.0","0.99","Synon","gcc","gcT","177C>T","Ala59Ala",null,"fig|83332.12.peg.2450","Rv2198c","mmpS3","Membrane protein MmpS3","putative membrane protein","Cytochrome c oxidase polypeptide IV (EC 1.9.3.1)","synonymous_variantLOW"]
[7011,"NC_000962",2470197,"A","G","1835.84","60.0","1.00","Synon","tgt","tgC","267T>C","Cys89Cys",null,"fig|83332.12.peg.2457","Rv2205c",null,"Glycerate kinase (EC 2.7.1.31)","Iron-sulfur cluster insertion protein SCO2161","CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase","synonymous_variantLOW"]
["G01492","NC_000962",2470591,"A","C","13521.8","424.0","1.00",{"$nulls":10},"Glycerate kinase (EC 2.7.1.31)","CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase","intergenic_regionMODIFIER"]
["G01222","NC_000962",2471816,"A","G","1220.79","41.0","1.00","Nonsyn","acc","Gcc","406A>G","Thr136Ala",null,"fig|83332.12.peg.2459","Rv2207","cobT","Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)","CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase","Cobalamin synthase (EC 2.7.8.26)","missense_variantMODERATE"]
["MP1","NC_000962",2471816,"A","G","2362.31","70.0","1.00","Nonsyn","acc","Gcc","406A>G","Thr136Ala",null,"fig|83332.12.peg.2459","Rv2207","cobT","Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)","CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase","Cobalamin synthase (EC 2.7.8.26)","missense_variantMODERATE"]
[64,"NC_000962",2476031,"CAA","CAAA",{"v":321278,"d":"321,278"},"14.0","0.74","Insertion",{"$nulls":9},"Branched-chain amino acid aminotransferase (EC 2.6.1.42)","Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)","intergenic_regionMODERATE"]
["MP1","NC_000962",2476031,"CAA","CAAA","5126.75","163.0","0.90","Insertion",{"$nulls":9},"Branched-chain amino acid aminotransferase (EC 2.6.1.42)","Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)","intergenic_regionMODERATE"]
[64,"NC_000962",2478239,"G","A","1608.76","49.0","1.00","Synon","ggg","ggA","1050G>A","Gly350Gly",null,"fig|83332.12.peg.2464","Rv2212",null,"Adenylate cyclase (EC 4.6.1.1)","Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)","Cytosol aminopeptidase PepA (EC 3.4.11.1)","synonymous_variantLOW"]
[7739,"NC_000962",2478967,"C","G","3468.21","106.0","1.00","Nonsyn","ttc","ttG","630C>G","Phe210Leu",null,"fig|83332.12.peg.2465","Rv2213","pepB","Cytosol aminopeptidase PepA (EC 3.4.11.1)","Adenylate cyclase (EC 4.6.1.1)","Oxidoreductase Rv2214c, short-chain dehydrogenase/reductase family","missense_variantLOW"]
["G01498","NC_000962",2491160,"G","A","2315.18","81.0","0.96","Synon","ggc","ggT","1194C>T","Gly398Gly",null,"fig|83332.12.peg.2474","Rv2221c","glnE","Glutamine synthetase adenylyl-L-tyrosine phosphorylase (EC 2.7.7.89) / Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)","Glutamine synthetase type I (EC 6.3.1.2)","Glutamine synthetase type I (EC 6.3.1.2)","synonymous_variantMODERATE"]
["G01491","NC_000962",2495500,"T","C","5567.9","179.0","0.99","Synon","tta","ttG","1524A>G","Leu508Leu",null,"fig|83332.12.peg.2477","Rv2224c",null,"Exported protease","Exported protease","Diacyglycerol O-acyltransferase (EC 2.3.1.20)","synonymous_variantLOW"]
[54,"NC_000962",2495500,"T","C","2786.09","101.0","0.97","Synon","tta","ttG","1524A>G","Leu508Leu",null,"fig|83332.12.peg.2477","Rv2224c",null,"Exported protease","Exported protease","Diacyglycerol O-acyltransferase (EC 2.3.1.20)","synonymous_variantLOW"]
["MP2","NC_000962",2497574,"A","C","5348.47","161.0","0.99",{"$nulls":10},"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)","intergenic_regionMODIFIER"]
["MP1","NC_000962",2497574,"A","C","7069.03","207.0","1.00",{"$nulls":10},"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)","intergenic_regionMODIFIER"]
[64,"NC_000962",2499726,"G","A","1823.0","59.0","0.95","Nonsyn","gat","Aat","838G>A","AsMP280Asn",null,"fig|83332.12.peg.2480","Rv2226",null,"CHAD domain containing protein","3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",2501147,"GT","GCC","1580.33","50.0","0.98","Insertion","gtg","GCCg","226delTinsCC","Ter76fs","yes","fig|83332.12.peg.2482","Rv2227",null,"hypothetical protein Rv2227","CHAD domain containing protein","FIG006762: Phosphoglycerate mutase family"]
["G01498","NC_000962",2505919,"A","G","2948.05","101.0","0.98",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODERATE"]
["G01492","NC_000962",2509362,"G","A","4828.74","160.0","0.99","Nonsyn","acc","aTc","32C>T","Thr11Ile",null,"fig|83332.12.peg.2493","Rv2236c","cobD","Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)","Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion","hypothetical protein Rv2237","missense_variantMODERATE"]
["G01222","NC_000962",2509722,"A","G","1234.95","43.0","1.00","Synon","cca","ccG","282A>G","Pro94Pro",null,"fig|83332.12.peg.2494","Rv2237",null,"hypothetical protein Rv2237","Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",2509722,"A","G","7169.37","210.0","1.00","Synon","cca","ccG","282A>G","Pro94Pro",null,"fig|83332.12.peg.2494","Rv2237",null,"hypothetical protein Rv2237","Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",2511712,"G","T","2405.1","73.0","1.00","Nonsyn","aca","aAa","434C>A","Thr145Lys",null,"fig|83332.12.peg.2498","Rv2240c",null,"hypothetical protein","hypothetical protein","Pyruvate dehydrogenase E1 component (EC 1.2.4.1)","missense_variantMODERATE"]
["MP2","NC_000962",2511712,"G","T","6957.11","201.0","1.00","Nonsyn","aca","aAa","434C>A","Thr145Lys",null,"fig|83332.12.peg.2498","Rv2240c",null,"hypothetical protein","hypothetical protein","Pyruvate dehydrogenase E1 component (EC 1.2.4.1)","missense_variantMODERATE"]
[58,"NC_000962",2512035,"C","G",{"v":398499,"d":"398,499"},"13.0","1.00","Synon","acg","acC","111G>C","Thr37Thr",null,"fig|83332.12.peg.2498","Rv2240c",null,"hypothetical protein","hypothetical protein","Pyruvate dehydrogenase E1 component (EC 1.2.4.1)","synonymous_variantLOW"]
[7011,"NC_000962",2515639,"G","T","2779.31","91.0","1.00","Synon","gtg","gtT","273G>T","Val91Val",null,"fig|83332.12.peg.2500","Rv2242",null,"Transcriptional regulator, CdaR-family","Pyruvate dehydrogenase E1 component (EC 1.2.4.1)","Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)","synonymous_variantLOW"]
["G01492","NC_000962",2516567,"G","C","12089.4","377.0","0.98",{"$nulls":10},"Transcriptional regulator, CdaR-family","Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)","intergenic_regionMODIFIER"]
["G01222","NC_000962",2518132,"C","T",{"v":824374,"d":"824,374"},"26.0","0.96",{"$nulls":10},"Acyl carrier protein","3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)","intergenic_regionMODERATE"]
["MP1","NC_000962",2518132,"C","T","7169.48","211.0","1.00",{"$nulls":10},"Acyl carrier protein","3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)","intergenic_regionMODERATE"]
["MP2","NC_000962",2521342,"T","C","5168.48","156.0","0.99","Synon","gat","gaC","600T>C","AsMP200Asp",null,"fig|83332.12.peg.2505","Rv2247","accD6","Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)","3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",2522284,"G","A",{"v":730951,"d":"730,951"},"22.0","1.00",{"$nulls":10},"Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",2522284,"G","A",{"v":940683,"d":"940,683"},"30.0","1.00",{"$nulls":10},"Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)","hypothetical protein","intergenic_regionHIGH"]
[7739,"NC_000962",2526053,"G","T","3172.34","104.0","0.98","Synon","tcg","tcT","276G>T","Ser92Ser",null,"fig|83332.12.peg.2510","Rv2251",null,"Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","Diacylglycerol kinase-related protein","synonymous_variantLOW"]
["G01498","NC_000962",2526974,"T","C","3278.98","107.0","0.99","Synon","cct","ccC","1197T>C","Pro399Pro",null,"fig|83332.12.peg.2510","Rv2251",null,"Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","Diacylglycerol kinase-related protein","synonymous_variantLOW"]
["G01491","NC_000962",2527522,"G","A","3805.48","122.0","0.98","Nonsyn","atg","atA","534G>A","Met178Ile",null,"fig|83332.12.peg.2511","Rv2252",null,"Diacylglycerol kinase-related protein","Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","FIG00820044: hypothetical protein","missense_variantLOW"]
[54,"NC_000962",2527522,"G","A",{"v":639764,"d":"639,764"},"23.0","1.00","Nonsyn","atg","atA","534G>A","Met178Ile",null,"fig|83332.12.peg.2511","Rv2252",null,"Diacylglycerol kinase-related protein","Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","FIG00820044: hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",2531742,"A","G","7737.21","229.0","0.99","Synon","gct","gcC","156T>C","Ala52Ala",null,"fig|83332.12.peg.2517","Rv2258c",null,"Transcriptional regulator","Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily","Formaldehyde dehydrogenase MscR, NAD/mycothiol-dependent (EC 1.2.1.66) / S-nitrosomycothiol reductase MscR","synonymous_variantMODIFIER"]
[58,"NC_000962",2534562,"GGAG","GG","1111.07","34.0","1.00","Deletion","ctccgc","CCgc","1000_1001delCT","Leu334fs","yes","fig|83332.12.peg.2521","Rv2262c",null,"Apolipoprotein N-acyltransferase","Apolipoprotein N-acyltransferase","Oxidoreductase, short-chain dehydrogenase/reductase family","frameshift_variantHIGH"]
[7011,"NC_000962",2535032,"G","A","2922.68","95.0","1.00","Nonsyn","gcg","gTg","533C>T","Ala178Val",null,"fig|83332.12.peg.2521","Rv2262c",null,"Apolipoprotein N-acyltransferase","Apolipoprotein N-acyltransferase","Oxidoreductase, short-chain dehydrogenase/reductase family","missense_variantMODERATE"]
[7739,"NC_000962",2535032,"G","A","3079.24","103.0","0.99","Nonsyn","gcg","gTg","533C>T","Ala178Val",null,"fig|83332.12.peg.2521","Rv2262c",null,"Apolipoprotein N-acyltransferase","Apolipoprotein N-acyltransferase","Oxidoreductase, short-chain dehydrogenase/reductase family","missense_variantMODERATE"]
[7011,"NC_000962",2539620,"G","A","2927.91","88.0","1.00","Synon","gtg","gtA","897G>A","Val299Val",null,"fig|83332.12.peg.2526","Rv2265",null,"hypothetical protein","hypothetical protein","Putative cytochrome P450 hydroxylase","synonymous_variantMODERATE"]
["G01492","NC_000962",2542395,"G","T","9001.26","299.0","0.97","Nonsyn","gca","gAa","329C>A","Ala110Glu",null,"fig|83332.12.peg.2528","Rv2267c",null,"hypothetical protein","Putative cytochrome P450 hydroxylase","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",2547118,"A","C","812.67","27.0","1.00","Nonsyn","gaa","gCa","236A>C","Glu79Ala",null,"fig|83332.12.peg.2537","Rv2275",null,"Cyclo(L-tyrosyl-L-tyrosyl) synthase (EC 2.3.2.21)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2547118,"A","C","6415.59","192.0","0.99","Nonsyn","gaa","gCa","236A>C","Glu79Ala",null,"fig|83332.12.peg.2537","Rv2275",null,"Cyclo(L-tyrosyl-L-tyrosyl) synthase (EC 2.3.2.21)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",2548729,"C","G",{"v":910588,"d":"910,588"},"29.0","1.00","Synon","ctc","ctG","981C>G","Leu327Leu",null,"fig|83332.12.peg.2538","Rv2276","cyMP121","hypothetical protein","Cyclo(L-tyrosyl-L-tyrosyl) synthase (EC 2.3.2.21)","Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)","synonymous_variantHIGH"]
[7739,"NC_000962",2551916,"C","G","1519.81","52.0","0.98","Synon","gcc","gcG","357C>G","Ala119Ala",null,"fig|83332.12.peg.2542","Rv2280",null,"FAD/FMN-containing dehydrogenase","Mobile element protein","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",2554391,"A","C","2189.22","79.0","0.93","Nonsyn","agc","Cgc","1069A>C","Ser357Arg",null,"fig|83332.12.peg.2544","Rv2281","pitB","Probable low-affinity inorganic phosphate transporter","hypothetical protein","Transcriptional regulator, LysR family","missense_variantMODERATE"]
[7011,"NC_000962",2554391,"A","C","2800.46","89.0","0.99","Nonsyn","agc","Cgc","1069A>C","Ser357Arg",null,"fig|83332.12.peg.2544","Rv2281","pitB","Probable low-affinity inorganic phosphate transporter","hypothetical protein","Transcriptional regulator, LysR family","missense_variantMODERATE"]
["G01492","NC_000962",2559402,"G","A","9595.07","324.0","0.95","Synon","gac","gaT","168C>T","Asp56Asp",null,"fig|83332.12.peg.2549","Rv2286c",null,"hypothetical protein","Diacyglycerol O-acyltransferase (EC 2.3.1.20)","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",2562783,"T","C","1426.44","46.0","1.00",{"$nulls":10},"CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",2562783,"T","C","5550.7","162.0","1.00",{"$nulls":10},"CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",2563958,"A","C","2498.48","83.0","1.00","Nonsyn","gag","gCg","785A>C","Glu262Ala",null,"fig|83332.12.peg.2554","Rv2291","sseB","Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)","hypothetical protein","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","missense_variantMODERATE"]
[58,"NC_000962",2564368,"GCA","GCCA",{"v":470517,"d":"470,517"},"17.0","0.81","Insertion","tttgct","ttTGGCt","663_664insG","Phe221_Ala222fs","yes","fig|83332.12.peg.2556","Rv2293c",null,"5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","Cystathionine beta-lyase, type II (EC 4.4.1.8)","frameshift_variantHIGH"]
[7011,"NC_000962",2566766,"CGA","CGGC","1934.1","64.0","0.97","Insertion",{"$nulls":9},"Cystathionine beta-lyase, type II (EC 4.4.1.8)","Colicin E2 tolerance protein CbrC-like protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",2572460,"G","A","10074.2","337.0","0.97","Synon","cac","caT","399C>T","His133His",null,"fig|83332.12.peg.2563","Rv2300c",null,"MBL-fold metallo-hydrolase superfamily","Chaperone protein HtpG","hypothetical protein","synonymous_variantMODERATE"]
["G01498","NC_000962",2572460,"G","A","2774.68","93.0","0.96","Synon","cac","caT","399C>T","His133His",null,"fig|83332.12.peg.2563","Rv2300c",null,"MBL-fold metallo-hydrolase superfamily","Chaperone protein HtpG","hypothetical protein","synonymous_variantMODERATE"]
["G01491","NC_000962",2573756,"C","A","4986.94","158.0","0.99",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",2573756,"C","A","3980.41","130.0","0.96",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",2576251,"G","A","6330.05","190.0","0.99","Nonsyn","ggc","gAc","443G>A","Gly148Asp",null,"fig|83332.12.peg.2568","Rv2305",null,"NRPS condensation (elongation) domain containing protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",2577246,"A","G",{"v":413111,"d":"413,111"},"15.0","0.94","Nonsyn","atc","aCc","575T>C","Ile192Thr",null,"fig|83332.12.peg.2569",null,null,"hypothetical protein","NRPS condensation (elongation) domain containing protein","Hydrolase, alpha/beta fold family","missense_variantMODERATE"]
[7011,"NC_000962",2577994,"G","A","2874.59","98.0","1.00","Nonsyn","cgg","Tgg","679C>T","Arg227Trp",null,"fig|83332.12.peg.2570","Rv2307c",null,"Hydrolase, alpha/beta fold family","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",2578626,"A","G","11120.0","362.0","0.99","Nonsyn","atg","aCg","47T>C","Met16Thr",null,"fig|83332.12.peg.2570","Rv2307c",null,"Hydrolase, alpha/beta fold family","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2578626,"A","G","6741.26","196.0","1.00","Nonsyn","atg","aCg","47T>C","Met16Thr",null,"fig|83332.12.peg.2570","Rv2307c",null,"Hydrolase, alpha/beta fold family","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",2581109,"C","A","10828.9","350.0","0.97","Synon","cgg","Agg","691C>A","Arg231Arg",null,"fig|83332.12.peg.2573","Rv2308",null,"hypothetical protein","hypothetical protein","hypothetical protein","synonymous_variantMODIFIER"]
["G01222","NC_000962",2586127,"A","G",{"v":523889,"d":"523,889"},"20.0","1.00","Synon","ggt","ggC","1164T>C","Gly388Gly",null,"fig|83332.12.peg.2584","Rv2314c",null,"TldE/PmbA family protein, Actinobacterial subgroup","hypothetical protein","TldD family protein, Actinobacterial subgroup","synonymous_variantLOW"]
["MP1","NC_000962",2586127,"A","G","7652.35","225.0","1.00","Synon","ggt","ggC","1164T>C","Gly388Gly",null,"fig|83332.12.peg.2584","Rv2314c",null,"TldE/PmbA family protein, Actinobacterial subgroup","hypothetical protein","TldD family protein, Actinobacterial subgroup","synonymous_variantLOW"]
[64,"NC_000962",2586480,"G","A",{"v":691854,"d":"691,854"},"22.0","1.00","Synon","ctg","Ttg","811C>T","Leu271Leu",null,"fig|83332.12.peg.2584","Rv2314c",null,"TldE/PmbA family protein, Actinobacterial subgroup","hypothetical protein","TldD family protein, Actinobacterial subgroup","synonymous_variantLOW"]
[7739,"NC_000962",2589216,"G","C","1544.41","54.0","0.96","Nonsyn","gtg","Ctg","319G>C","Val107Leu",null,"fig|83332.12.peg.2586","Rv2316","uspA","ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron)","TldD family protein, Actinobacterial subgroup","ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)","missense_variantMODERATE"]
["G01498","NC_000962",2590882,"A","C","1733.46","56.0","1.00","Nonsyn","gac","gCc","365A>C","AsMP122Ala",null,"fig|83332.12.peg.2588","Rv2318","uspC","ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)","ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron)","Universal stress protein family","missense_variantMODERATE"]
["G01491","NC_000962",2598400,"A","G","6089.82","190.0","0.99","Synon","aat","aaC","1428T>C","Asn476Asn",null,"fig|83332.12.peg.2596","Rv2326c",null,"Candidate substrate-specific domain of ECF transporters in Mycobacteria / Duplicated ATPase component of energizing module of predicted ECF transporter in Mycobacteria","Transmembrane component of energizing module of ECF transporters in Mycobacteria","Transcriptional regulator Rv2327, MarR family","synonymous_variantLOW"]
[54,"NC_000962",2598400,"A","G","4099.16","125.0","0.99","Synon","aat","aaC","1428T>C","Asn476Asn",null,"fig|83332.12.peg.2596","Rv2326c",null,"Candidate substrate-specific domain of ECF transporters in Mycobacteria / Duplicated ATPase component of energizing module of predicted ECF transporter in Mycobacteria","Transmembrane component of energizing module of ECF transporters in Mycobacteria","Transcriptional regulator Rv2327, MarR family","synonymous_variantLOW"]
["G01222","NC_000962",2605293,"G","T",{"v":842464,"d":"842,464"},"28.0","1.00","Nonsyn","gag","gaT","186G>T","Glu62Asp",null,"fig|83332.12.peg.2604","Rv2332","mez","NAD-dependent malic enzyme (EC 1.1.1.38)","hypothetical protein","MFS-type transporter Rv2333c family ","missense_variantMODERATE"]
["MP1","NC_000962",2605293,"G","T","8144.93","254.0","1.00","Nonsyn","gag","gaT","186G>T","Glu62Asp",null,"fig|83332.12.peg.2604","Rv2332","mez","NAD-dependent malic enzyme (EC 1.1.1.38)","hypothetical protein","MFS-type transporter Rv2333c family ","missense_variantMODERATE"]
[7739,"NC_000962",2606797,"GG","GCG","2424.05","82.0","0.99","Insertion","gaccta","gaCGCta","1524_1525insG","Asp508_Leu509fs","yes","fig|83332.12.peg.2605","Rv2333c",null,"MFS-type transporter Rv2333c family ","NAD-dependent malic enzyme (EC 1.1.1.38)","hypothetical protein","frameshift_variantHIGH"]
[58,"NC_000962",2608117,"C","A",{"v":593814,"d":"593,814"},"21.0","1.00","Nonsyn","gac","Tac","205G>T","Asp69Tyr",null,"fig|83332.12.peg.2605","Rv2333c",null,"MFS-type transporter Rv2333c family ","NAD-dependent malic enzyme (EC 1.1.1.38)","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",2608488,"T","C","2478.88","78.0","1.00","Synon","ggt","ggC","141T>C","Gly47Gly",null,"fig|83332.12.peg.2606",null,null,"hypothetical protein","MFS-type transporter Rv2333c family ","Cysteine synthase (EC 2.5.1.47)","synonymous_variantLOW"]
["G01492","NC_000962",2611583,"C","T","6424.23","204.0","0.97","Synon","cac","caT","531C>T","His177His",null,"fig|83332.12.peg.2609","Rv2336",null,"hypothetical protein","Serine acetyltransferase (EC 2.3.1.30)","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",2612632,"C","A",{"v":517151,"d":"517,151"},"20.0","0.83","Nonsyn","ggc","gTc","329G>T","Gly110Val",null,"fig|83332.12.peg.2610","Rv2337c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2612632,"C","A","7230.22","217.0","1.00","Nonsyn","ggc","gTc","329G>T","Gly110Val",null,"fig|83332.12.peg.2610","Rv2337c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2612632,"C","A","2097.58","72.0","1.00","Nonsyn","ggc","gTc","329G>T","Gly110Val",null,"fig|83332.12.peg.2610","Rv2337c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",2619271,"T","C","6444.36","190.0","1.00",{"$nulls":10},"PE_PGRS family protein ","tRNA-Asn-GTT","intergenic_regionMODIFIER"]
[58,"NC_000962",2626196,"A","G",{"v":596846,"d":"596,846"},"28.0","1.00",{"$nulls":10},"ESAT-6-like protein EsxL","ESAT-6-like protein EsxK","intergenic_regionMODIFIER"]
[7011,"NC_000962",2630413,"G","T","1343.66","50.0","0.98",{"$nulls":10},"Phospholipase C (EC 3.1.4.3)","Phospholipase C (EC 3.1.4.3)","intergenic_regionMODIFIER"]
["G01492","NC_000962",2631424,"T","G","7233.72","228.0","0.99","Nonsyn","agt","Cgt","676A>C","Ser226Arg",null,"fig|83332.12.peg.2625","Rv2351c","plcA","Phospholipase C (EC 3.1.4.3)","Phospholipase C (EC 3.1.4.3)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2631424,"T","G","3767.11","130.0","0.86","Nonsyn","agt","Cgt","676A>C","Ser226Arg",null,"fig|83332.12.peg.2625","Rv2351c","plcA","Phospholipase C (EC 3.1.4.3)","Phospholipase C (EC 3.1.4.3)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2631641,"T","G","1669.48","58.0","0.98","Synon","cca","ccC","459A>C","Pro153Pro",null,"fig|83332.12.peg.2625","Rv2351c","plcA","Phospholipase C (EC 3.1.4.3)","Phospholipase C (EC 3.1.4.3)","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",2632341,"CAA","CAAA","5568.39","174.0","0.93","Insertion",{"$nulls":9},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",2632341,"CAA","CAAA","5204.71","162.0","0.92","Insertion",{"$nulls":9},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",2632500,"A","G","1057.74","34.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionHIGH"]
[7739,"NC_000962",2634849,"C","A","2958.55","90.0","1.00","Synon","tcg","tcT","744G>T","Ser248Ser",null,"fig|83332.12.peg.2629","Rv2353c","PPE39","PPE family protein ","PPE family protein, SVP subgroup ","Insertion element IS6110 (Mycobacterium tuberculosis) transposase","synonymous_variantMODERATE"]
["G01498","NC_000962",2637541,"C","T","3326.66","106.0","0.99","Synon","cag","caA","95C>T","Ala32Val",null,"fig|83332.12.peg.2634",null,null,"hypothetical protein","hypothetical protein","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["G01491","NC_000962",2641840,"A","G","3576.48","108.0","1.00","Nonsyn","cac","cGc","191A>G","His64Arg",null,"fig|83332.12.peg.2638","Rv2359","furB","Zinc uptake regulation protein Zur","Transcriptional regulator in glycyl-tRNA synthetase containing cluster","FIG025412: hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2641840,"A","G",{"v":469076,"d":"469,076"},"15.0","1.00","Nonsyn","cac","cGc","191A>G","His64Arg",null,"fig|83332.12.peg.2638","Rv2359","furB","Zinc uptake regulation protein Zur","Transcriptional regulator in glycyl-tRNA synthetase containing cluster","FIG025412: hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",2642383,"C","T","8079.99","240.0","1.00","Nonsyn","gcc","Acc","196G>A","Ala66Thr",null,"fig|83332.12.peg.2639","Rv2360c",null,"FIG025412: hypothetical protein","Zinc uptake regulation protein Zur","Trans,polycis-decaprenyl diphosphate synthase (EC 2.5.1.86)","missense_variantMODERATE"]
[58,"NC_000962",2646381,"G","T",{"v":148543,"d":"148,543"},"6.0","0.86","Nonsyn","gcg","gAg","320C>A","Ala107Glu",null,"fig|83332.12.peg.2643","Rv2364c","era","GTP-binding protein Era","Amidase family protein MSMEG_4492","Uncharacterized protein SCO2538","missense_variantHIGH"]
[7011,"NC_000962",2654565,"G","C","3349.34","100.0","1.00","Nonsyn","cag","Gag","529C>G","Gln177Glu",null,"fig|83332.12.peg.2655","Rv2374c","hrcA","Heat-inducible transcription repressor HrcA","Chaperone protein DnaJ","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",2654565,"G","C","1223.54","40.0","1.00","Nonsyn","cag","Gag","529C>G","Gln177Glu",null,"fig|83332.12.peg.2655","Rv2374c","hrcA","Heat-inducible transcription repressor HrcA","Chaperone protein DnaJ","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",2656225,"A","G","2919.78","90.0","1.00","Nonsyn","gtc","gCc","206T>C","Val69Ala",null,"fig|83332.12.peg.2658","Rv2377c","mbtH","MbtH-like NRPS chaperone ","Low molecular weight antigen MTB12 precursor","L-lysine 6-monooxygenase (EC 1.14.13.59) in siderophore biosynthesis ","missense_variantMODERATE"]
["G01492","NC_000962",2660319,"C","G","12891.3","423.0","0.99","Nonsyn","gag","gaC","1752G>C","Glu584Asp",null,"fig|83332.12.peg.2660","Rv2379c","mbtF","Peptide synthetase MbtF @ Siderophore biosynthesis non-ribosomal peptide synthetase modules","L-lysine 6-monooxygenase (EC 1.14.13.59) in siderophore biosynthesis ","Peptide synthetase MbtE @ Siderophore biosynthesis non-ribosomal peptide synthetase modules","missense_variantMODERATE"]
["G01222","NC_000962",2674180,"G","A","1087.65","38.0","1.00","Nonsyn","gcg","gTg","1658C>T","Ala553Val",null,"fig|83332.12.peg.2664","Rv2383c","mbtB","Phenyloxazoline synthase (EC 6.3.2.-) [mycobactin] siderophore / Thioesterase [mycobactin] siderophore @ Phenyloxazoline synthase siderophore, IrMP2-like / Thioesterase in siderophore biosynthesis gene cluster","Polyketide synthetase MbtC @ Polyketide synthase","Bifunctional salicyl-AMP ligase/salicyl-S-MbtB synthetase MbtA @ adenylation component of NRPS","missense_variantMODERATE"]
["MP1","NC_000962",2674180,"G","A","2918.81","88.0","1.00","Nonsyn","gcg","gTg","1658C>T","Ala553Val",null,"fig|83332.12.peg.2664","Rv2383c","mbtB","Phenyloxazoline synthase (EC 6.3.2.-) [mycobactin] siderophore / Thioesterase [mycobactin] siderophore @ Phenyloxazoline synthase siderophore, IrMP2-like / Thioesterase in siderophore biosynthesis gene cluster","Polyketide synthetase MbtC @ Polyketide synthase","Bifunctional salicyl-AMP ligase/salicyl-S-MbtB synthetase MbtA @ adenylation component of NRPS","missense_variantMODERATE"]
[64,"NC_000962",2678834,"A","G",{"v":600632,"d":"600,632"},"22.0","0.88","Nonsyn","atg","aCg","1172T>C","Met391Thr",null,"fig|83332.12.peg.2667","Rv2386c","mbtI","Salicylate synthetase (EC 5.4.4.2)(EC 4.2.99.21) @ Salicylate synthetase (EC 5.4.4.2)(EC 4.2.99.21) of siderophore biosynthesis","Acetyl hydrolase MbtJ","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",2680658,"T","G","2281.14","83.0","0.99","Synon","act","acG","201T>G","Thr67Thr",null,"fig|83332.12.peg.2668",null,null,"hypothetical protein","Salicylate synthetase (EC 5.4.4.2)(EC 4.2.99.21) @ Salicylate synthetase (EC 5.4.4.2)(EC 4.2.99.21) of siderophore biosynthesis","putative sodium-dependent bicarbonate transporter","synonymous_variantLOW"]
[58,"NC_000962",2680658,"T","G","2285.98","101.0","0.70","Synon","act","acG","201T>G","Thr67Thr",null,"fig|83332.12.peg.2668",null,null,"hypothetical protein","Salicylate synthetase (EC 5.4.4.2)(EC 4.2.99.21) @ Salicylate synthetase (EC 5.4.4.2)(EC 4.2.99.21) of siderophore biosynthesis","putative sodium-dependent bicarbonate transporter","synonymous_variantLOW"]
[7011,"NC_000962",2680728,"G","A","3760.96","129.0","0.99",{"$nulls":10},"hypothetical protein","putative sodium-dependent bicarbonate transporter","intergenic_regionMODIFIER"]
["G01492","NC_000962",2684504,"C","A","10412.8","341.0","0.97","Nonsyn","aac","aaA","18C>A","Asn6Lys",null,"fig|83332.12.peg.2673",null,null,"hypothetical protein","FIG00821219: MCE associated membrane protein","Ferredoxin--sulfite reductase, actinobacterial type (EC 1.8.7.1)","missense_variantMODERATE"]
[7011,"NC_000962",2688726,"T","C","3052.16","99.0","1.00","Synon","gct","gcC","564T>C","Ala188Ala",null,"fig|83332.12.peg.2678","Rv2394","ggtB","Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)","hypothetical protein","Oligopeptide transporter, OPT family","synonymous_variantLOW"]
[54,"NC_000962",2688726,"T","C","5432.64","165.0","0.99","Synon","gct","gcC","564T>C","Ala188Ala",null,"fig|83332.12.peg.2678","Rv2394","ggtB","Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)","hypothetical protein","Oligopeptide transporter, OPT family","synonymous_variantLOW"]
["MP2","NC_000962",2689193,"G","A","5999.46","182.0","0.99","Nonsyn","cgg","cAg","1031G>A","Arg344Gln",null,"fig|83332.12.peg.2678","Rv2394","ggtB","Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)","hypothetical protein","Oligopeptide transporter, OPT family","missense_variantHIGH"]
[58,"NC_000962",2691713,"T","C","1828.19","58.0","0.98","Nonsyn","tcg","Ccg","1642T>C","Ser548Pro",null,"fig|83332.12.peg.2679","Rv2395",null,"Oligopeptide transporter, OPT family","Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)","Acid and phagosome regulated protein AprA","missense_variantMODERATE"]
[7011,"NC_000962",2693089,"T","C","2307.71","71.0","1.00","Synon","cct","ccC","291T>C","Pro97Pro",null,"fig|83332.12.peg.2681","Rv2396","PE_PGRS41","PE_PGRS family protein ","Acid and phagosome regulated protein AprA","Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)","synonymous_variantLOW"]
[7739,"NC_000962",2693089,"T","C","1942.91","61.0","1.00","Synon","cct","ccC","291T>C","Pro97Pro",null,"fig|83332.12.peg.2681","Rv2396","PE_PGRS41","PE_PGRS family protein ","Acid and phagosome regulated protein AprA","Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)","synonymous_variantLOW"]
["G01498","NC_000962",2695378,"C","G","4649.62","154.0","0.97","Nonsyn","ggc","gCc","422G>C","Gly141Ala",null,"fig|83332.12.peg.2683","Rv2398c","cysW","Sulfate transport system permease protein CysW","Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)","Sulfate transport system permease protein CysT","missense_variantMODERATE"]
["G01491","NC_000962",2709795,"A","G","4633.11","148.0","0.99","Synon","gct","gcC","162T>C","Ala54Ala",null,"fig|83332.12.peg.2700","Rv2411c",null,"Protein containing domains DUF404, DUF407","Protein containing domains DUF403","SSU ribosomal protein S20p","synonymous_variantLOW"]
[54,"NC_000962",2709795,"A","G",{"v":769463,"d":"769,463"},"26.0","1.00","Synon","gct","gcC","162T>C","Ala54Ala",null,"fig|83332.12.peg.2700","Rv2411c",null,"Protein containing domains DUF404, DUF407","Protein containing domains DUF403","SSU ribosomal protein S20p","synonymous_variantLOW"]
["MP2","NC_000962",2712913,"C","A","5517.53","171.0","0.99","Nonsyn","cgg","cTg","872G>T","Arg291Leu",null,"fig|83332.12.peg.2704","Rv2415c",null,"Late competence protein ComEA, DNA receptor","DNA internalization-related competence protein ComEC/Rec2","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",2713795,"C","T",{"v":303903,"d":"303,903"},"12.0","0.92","Nonsyn","cag","Tag","13C>T","Gln5*",null,"fig|83332.12.peg.2705",null,null,"hypothetical protein","Late competence protein ComEA, DNA receptor","Enhanced intracellular survival protein","stop_gainedHIGH"]
["G01222","NC_000962",2718852,"T","G","717.56","23.0","1.00",{"$nulls":10},"Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",2719057,"G","A","1914.8","64.0","0.97",{"$nulls":10},"Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)","hypothetical protein","intergenic_regionMODERATE"]
[7011,"NC_000962",2719057,"G","A","2045.54","66.0","1.00",{"$nulls":10},"Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)","hypothetical protein","intergenic_regionMODERATE"]
["G01492","NC_000962",2719750,"CTTTTTG","CTTTTG","8114.74","278.0","0.94","Deletion","ctttttgcg","CTTTTGcg","159delT","Phe53fs","yes","fig|83332.12.peg.2713","Rv2423",null,"SAM-dependent methyltransferase","hypothetical protein","Mobile element protein","frameshift_variantHIGH"]
["G01222","NC_000962",2721562,"C","G",{"v":633583,"d":"633,583"},"21.0","1.00","Synon","gcg","gcC","216G>C","Ala72Ala",null,"fig|83332.12.peg.2714","Rv2424c",null,"Mobile element protein","SAM-dependent methyltransferase","Carbon monoxide oxidation accessory protein CoxE","synonymous_variantLOW"]
["MP1","NC_000962",2721562,"C","G","8202.71","240.0","1.00","Synon","gcg","gcC","216G>C","Ala72Ala",null,"fig|83332.12.peg.2714","Rv2424c",null,"Mobile element protein","SAM-dependent methyltransferase","Carbon monoxide oxidation accessory protein CoxE","synonymous_variantLOW"]
[64,"NC_000962",2723506,"T","C","2313.93","88.0","0.84","Synon","tta","ttG","678A>G","Leu226Leu",null,"fig|83332.12.peg.2716","Rv2426c",null,"Carbon monoxide oxidation accessory protein CoxD","Carbon monoxide oxidation accessory protein CoxE","Gamma-glutamyl phosphate reductase (EC 1.2.1.41)","synonymous_variantLOW"]
[7739,"NC_000962",2734074,"T","C","1292.62","50.0","1.00","Nonsyn","gtc","gCc","776T>C","Val259Ala",null,"fig|83332.12.peg.2730","Rv2436","rbsK","Ribokinase (EC 2.7.1.15)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",2737572,"C","A","2364.69","83.0","0.99","Nonsyn","gcg","Tcg","628G>T","Ala210Ser",null,"fig|83332.12.peg.2735","Rv2439c","proB","Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA","hypothetical protein","GTP-binding protein Obg","missense_variantMODERATE"]
["G01491","NC_000962",2740693,"T","C","3821.51","121.0","0.99","Synon","aga","agG","282A>G","Arg94Arg",null,"fig|83332.12.peg.2739",null,null,"hypothetical protein","LSU ribosomal protein L21p","Ribonuclease E (EC 3.1.26.12)","synonymous_variantLOW"]
["G01492","NC_000962",2740693,"T","C","9003.41","301.0","0.99","Synon","aga","agG","282A>G","Arg94Arg",null,"fig|83332.12.peg.2739",null,null,"hypothetical protein","LSU ribosomal protein L21p","Ribonuclease E (EC 3.1.26.12)","synonymous_variantLOW"]
[7739,"NC_000962",2750773,"G","A","2359.07","80.0","1.00","Nonsyn","gcc","gTc","800C>T","Ala267Val",null,"fig|83332.12.peg.2745","Rv2449c",null,"putative membrane protein","Valyl-tRNA synthetase (EC 6.1.1.9)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2750773,"G","A",{"v":850647,"d":"850,647"},"28.0","0.97","Nonsyn","gcc","gTc","800C>T","Ala267Val",null,"fig|83332.12.peg.2745","Rv2449c",null,"putative membrane protein","Valyl-tRNA synthetase (EC 6.1.1.9)","hypothetical protein","missense_variantLOW"]
["MP2","NC_000962",2751300,"G","A","5927.99","180.0","0.99","Synon","acc","acT","273C>T","Thr91Thr",null,"fig|83332.12.peg.2745","Rv2449c",null,"putative membrane protein","Valyl-tRNA synthetase (EC 6.1.1.9)","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",2751804,"C","T",{"v":226629,"d":"226,629"},"9.0","1.00","Nonsyn","cgg","cAg","377G>A","Arg126Gln",null,"fig|83332.12.peg.2746","Rv2450c","rpfE","hypothetical protein","putative membrane protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",2752698,"C","A","2956.19","99.0","1.00","Nonsyn","ggc","Tgc","16G>T","Gly6Cys",null,"fig|83332.12.peg.2748",null,null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",2760152,"A","G","8807.12","285.0","1.00","Nonsyn","tac","tGc","374A>G","Tyr125Cys",null,"fig|83332.12.peg.2756","Rv2458","mmuM","Homocysteine S-methyltransferase (EC 2.1.1.10)","ATP-dependent Clp protease ATP-binding subunit ClpX","Uncharacterized MFS-type transporter","missense_variantLOW"]
["G01222","NC_000962",2762064,"G","A",{"v":666493,"d":"666,493"},"21.0","1.00","Nonsyn","ggc","gAc","1283G>A","Gly428Asp",null,"fig|83332.12.peg.2757","Rv2459",null,"Uncharacterized MFS-type transporter","Homocysteine S-methyltransferase (EC 2.1.1.10)","ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)","missense_variantMODERATE"]
["G01491","NC_000962",2762064,"G","A","3071.0","100.0","0.97","Nonsyn","ggc","gAc","1283G>A","Gly428Asp",null,"fig|83332.12.peg.2757","Rv2459",null,"Uncharacterized MFS-type transporter","Homocysteine S-methyltransferase (EC 2.1.1.10)","ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)","missense_variantMODERATE"]
[54,"NC_000962",2762064,"G","A","1748.49","56.0","0.98","Nonsyn","ggc","gAc","1283G>A","Gly428Asp",null,"fig|83332.12.peg.2757","Rv2459",null,"Uncharacterized MFS-type transporter","Homocysteine S-methyltransferase (EC 2.1.1.10)","ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)","missense_variantMODERATE"]
["MP2","NC_000962",2764939,"G","A","7216.97","216.0","0.98","Nonsyn","ccc","cTc","353C>T","Pro118Leu",null,"fig|83332.12.peg.2760","Rv2462c","tig","Cell division trigger factor (EC 5.2.1.8)","ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)","tRNA-Pro-TGG","missense_variantMODERATE"]
[58,"NC_000962",2771794,"C","T","1097.02","37.0","0.97","Synon","gtg","gtA","318G>A","Val106Val",null,"fig|83332.12.peg.2766","Rv2468c",null,"Uncharacterized protein Rv2468c","Membrane alanine aminopeptidase N (EC 3.4.11.2)","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",2772741,"C","A","4164.57","127.0","1.00","Nonsyn","gcg","Tcg","358G>T","Ala120Ser",null,"fig|83332.12.peg.2768","Rv2469c",null,"HNH endonuclease family protein","hypothetical protein","Hemoglobin-like protein HbO","missense_variantMODERATE"]
["G01498","NC_000962",2772954,"T","C","2167.28","70.0","0.97","Nonsyn","agt","Ggt","145A>G","Ser49Gly",null,"fig|83332.12.peg.2768","Rv2469c",null,"HNH endonuclease family protein","hypothetical protein","Hemoglobin-like protein HbO","missense_variantMODERATE"]
["G01491","NC_000962",2773381,"C","A","2580.96","81.0","0.98","Nonsyn","cac","caA","213C>A","His71Gln",null,"fig|83332.12.peg.2769","Rv2470","glbO","Hemoglobin-like protein HbO","HNH endonuclease family protein","Alpha-glucosidase (EC 3.2.1.20)","missense_variantMODERATE"]
[54,"NC_000962",2773381,"C","A","1352.67","46.0","0.90","Nonsyn","cac","caA","213C>A","His71Gln",null,"fig|83332.12.peg.2769","Rv2470","glbO","Hemoglobin-like protein HbO","HNH endonuclease family protein","Alpha-glucosidase (EC 3.2.1.20)","missense_variantMODERATE"]
["G01222","NC_000962",2779136,"T","C",{"v":510172,"d":"510,172"},"17.0","1.00","Nonsyn","agc","Ggc","3142A>G","Ser1048Gly",null,"fig|83332.12.peg.2776","Rv2476c","gdh","NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form","Uncharacterized protein Rv2475c","Energy-dependent translational throttle protein EttA","missense_variantMODERATE"]
["MP1","NC_000962",2779136,"T","C","7095.14","208.0","1.00","Nonsyn","agc","Ggc","3142A>G","Ser1048Gly",null,"fig|83332.12.peg.2776","Rv2476c","gdh","NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form","Uncharacterized protein Rv2475c","Energy-dependent translational throttle protein EttA","missense_variantMODERATE"]
[64,"NC_000962",2786952,"A","G","2975.12","92.0","0.98","Nonsyn","tgc","Cgc","2332T>C","Cys778Arg",null,"fig|83332.12.peg.2782","Rv2482c","plsB2","Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)","hypothetical protein","Phosphoserine phosphatase (EC 3.1.3.3) / Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)","missense_variantMODERATE"]
[7739,"NC_000962",2790458,"A","C","3253.23","105.0","0.99","Nonsyn","tgt","Ggt","565T>G","Cys189Gly",null,"fig|83332.12.peg.2783","Rv2483c","plsC","Phosphoserine phosphatase (EC 3.1.3.3) / Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)","Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","missense_variantMODERATE"]
["G01498","NC_000962",2791098,"C","T","2462.26","80.0","1.00","Nonsyn","ggt","gAt","1436G>A","Gly479Asp",null,"fig|83332.12.peg.2784","Rv2484c",null,"Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","Phosphoserine phosphatase (EC 3.1.3.3) / Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",2791475,"A","G","4874.77","153.0","0.98","Synon","gct","gcC","1059T>C","Ala353Ala",null,"fig|83332.12.peg.2784","Rv2484c",null,"Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","Phosphoserine phosphatase (EC 3.1.3.3) / Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",2791475,"A","G",{"v":274358,"d":"274,358"},"15.0","0.75","Synon","gct","gcC","1059T>C","Ala353Ala",null,"fig|83332.12.peg.2784","Rv2484c",null,"Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","Phosphoserine phosphatase (EC 3.1.3.3) / Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",2792233,"C","T","1942.85","60.0","0.97","Nonsyn","gac","Aac","301G>A","AsMP101Asn",null,"fig|83332.12.peg.2784","Rv2484c",null,"Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","Phosphoserine phosphatase (EC 3.1.3.3) / Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2792233,"C","T",{"v":807017,"d":"807,017"},"30.0","0.97","Nonsyn","gac","Aac","301G>A","AsMP101Asn",null,"fig|83332.12.peg.2784","Rv2484c",null,"Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","Phosphoserine phosphatase (EC 3.1.3.3) / Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",2795559,"C","T","3058.95","108.0","0.99","Synon","acg","acA","1827G>A","Thr609Thr",null,"fig|83332.12.peg.2788","Rv2487c","PE_PGRS42","PE_PGRS family protein ","Enoyl-CoA hydratase (EC 4.2.1.17)","Cyclase homology domain / Predicted ATPase / Transcriptional regulator, LuxR family","synonymous_variantMODERATE"]
[58,"NC_000962",2798552,"C","T",{"v":842758,"d":"842,758"},"26.0","1.00","Nonsyn","gca","Aca","2257G>A","Ala753Thr",null,"fig|83332.12.peg.2789","Rv2488c",null,"Cyclase homology domain / Predicted ATPase / Transcriptional regulator, LuxR family","PE_PGRS family protein ","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",2807486,"C","A","3732.13","117.0","1.00","Nonsyn","gcc","gAc","209C>A","Ala70Asp",null,"fig|83332.12.peg.2794","Rv2492",null,"hypothetical protein","Rossmann-fold nucleotide-binding protein","antitoxin VapB38 @ Antitoxin to Toxin 1, PIN domain","missense_variantMODERATE"]
["G01492","NC_000962",2807597,"A","C","9343.3","304.0","0.97","Nonsyn","gaa","gCa","320A>C","Glu107Ala",null,"fig|83332.12.peg.2794","Rv2492",null,"hypothetical protein","Rossmann-fold nucleotide-binding protein","antitoxin VapB38 @ Antitoxin to Toxin 1, PIN domain","missense_variantMODERATE"]
["G01222","NC_000962",2809621,"T","C","1281.76","40.0","1.00","Nonsyn","acc","Gcc","286A>G","Thr96Ala",null,"fig|83332.12.peg.2797","Rv2495c","pdhC","Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)","toxin VapC38 @ Toxin 1, PIN domain","Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)","missense_variantMODERATE"]
["MP1","NC_000962",2809621,"T","C","5172.1","153.0","1.00","Nonsyn","acc","Gcc","286A>G","Thr96Ala",null,"fig|83332.12.peg.2797","Rv2495c","pdhC","Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)","toxin VapC38 @ Toxin 1, PIN domain","Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)","missense_variantMODERATE"]
[64,"NC_000962",2818837,"A","G","2201.73","73.0","0.95","Synon","ggt","ggC","261T>C","Gly87Gly",null,"fig|83332.12.peg.2806","Rv2503c","scoB","Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)","Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)","Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)","synonymous_variantLOW"]
["MP2","NC_000962",2818837,"A","G","7162.87","210.0","1.00","Synon","ggt","ggC","261T>C","Gly87Gly",null,"fig|83332.12.peg.2806","Rv2503c","scoB","Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)","Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)","Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)","synonymous_variantLOW"]
[58,"NC_000962",2821049,"G","A",{"v":418328,"d":"418,328"},"17.0","1.00","Nonsyn","gcg","gTg","548C>T","Ala183Val",null,"fig|83332.12.peg.2808","Rv2505c","fadD35","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD35","Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
[58,"NC_000962",2821342,"C","T",{"v":201684,"d":"201,684"},"8.0","1.00","Synon","gcg","gcA","255G>A","Ala85Ala",null,"fig|83332.12.peg.2808","Rv2505c","fadD35","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD35","Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)","Transcriptional regulator, AcrR family","synonymous_variantLOW"]
["G01498","NC_000962",2825466,"G","A","2708.6","87.0","1.00","Synon","aag","aaA","789G>A","Lys263Lys",null,"fig|83332.12.peg.2812","Rv2509",null,"Short-chain dehydrogenase/reductase Rv2509, SDR family","Uncharacterized MFS-type transporter","Uncharacterized protein YjgR","synonymous_variantLOW"]
["G01491","NC_000962",2827984,"G","T","3910.77","125.0","1.00",{"$nulls":10},"tRNA-His-GTG","Mobile element protein","intergenic_regionMODIFIER"]
[54,"NC_000962",2827984,"G","T","7632.43","229.0","1.00",{"$nulls":10},"tRNA-His-GTG","Mobile element protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",2828019,"T","C","5608.99","172.0","1.00",{"$nulls":10},"tRNA-His-GTG","Mobile element protein","intergenic_regionMODERATE"]
[58,"NC_000962",2830525,"C","A","5050.3","157.0","0.98","Nonsyn","acg","aAg","365C>A","Thr122Lys",null,"fig|83332.12.peg.2818","Rv2513",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODIFIER"]
[64,"NC_000962",2830525,"C","A","3493.84","109.0","0.98","Nonsyn","acg","aAg","365C>A","Thr122Lys",null,"fig|83332.12.peg.2818","Rv2513",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",2836508,"ATC","AC","1314.8","63.0","0.69","Deletion","atc","AC","725delT","Ile242fs","yes","fig|83332.12.peg.2824","Rv2519","PE26","PE family protein ","tRNA-Lys-CTT","Uncharacterized membrane-anchored protein Rv2520c","frameshift_variantHIGH"]
["G01498","NC_000962",2836672,"G","C","2130.82","72.0","0.95","Synon","ctg","ctC","888G>C","Leu296Leu",null,"fig|83332.12.peg.2824","Rv2519","PE26","PE family protein ","tRNA-Lys-CTT","Uncharacterized membrane-anchored protein Rv2520c","synonymous_variantLOW"]
["G01491","NC_000962",2841022,"A","G","6951.9","217.0","1.00","Nonsyn","tgc","Cgc","8311T>C","Cys2771Arg",null,"fig|83332.12.peg.2829","Rv2524c","fas","[Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase [NADPH, Si-specific] (EC 1.3.1.10) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61) / [Acyl-carrier-protein] malonyl transferase of FASI (EC 2.3.1.39) / [Acyl-carrier-protein] palmitoyl transferase of FASI (EC 2.3.1.-) / Acyl carrier protein of FASI / 3-oxoacyl-[acyl-carrier-protein] reductase of FASI (EC 1.1.1.100) / 3-oxoacyl-[acyl-carrier-protein] synthase of FASI (EC 2.3.1.41)","Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)","putative secreted protein","missense_variantMODERATE"]
[54,"NC_000962",2841022,"A","G","1318.94","54.0","0.93","Nonsyn","tgc","Cgc","8311T>C","Cys2771Arg",null,"fig|83332.12.peg.2829","Rv2524c","fas","[Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase [NADPH, Si-specific] (EC 1.3.1.10) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61) / [Acyl-carrier-protein] malonyl transferase of FASI (EC 2.3.1.39) / [Acyl-carrier-protein] palmitoyl transferase of FASI (EC 2.3.1.-) / Acyl carrier protein of FASI / 3-oxoacyl-[acyl-carrier-protein] reductase of FASI (EC 1.1.1.100) / 3-oxoacyl-[acyl-carrier-protein] synthase of FASI (EC 2.3.1.41)","Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)","putative secreted protein","missense_variantMODERATE"]
["G01222","NC_000962",2847281,"A","G","581.84","19.0","1.00","Synon","gat","gaC","2052T>C","Asp684Asp",null,"fig|83332.12.peg.2829","Rv2524c","fas","[Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase [NADPH, Si-specific] (EC 1.3.1.10) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61) / [Acyl-carrier-protein] malonyl transferase of FASI (EC 2.3.1.39) / [Acyl-carrier-protein] palmitoyl transferase of FASI (EC 2.3.1.-) / Acyl carrier protein of FASI / 3-oxoacyl-[acyl-carrier-protein] reductase of FASI (EC 1.1.1.100) / 3-oxoacyl-[acyl-carrier-protein] synthase of FASI (EC 2.3.1.41)","Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)","putative secreted protein","synonymous_variantMODIFIER"]
[64,"NC_000962",2847281,"A","G","6498.06","197.0","0.98","Synon","gat","gaC","2052T>C","Asp684Asp",null,"fig|83332.12.peg.2829","Rv2524c","fas","[Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase [NADPH, Si-specific] (EC 1.3.1.10) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61) / [Acyl-carrier-protein] malonyl transferase of FASI (EC 2.3.1.39) / [Acyl-carrier-protein] palmitoyl transferase of FASI (EC 2.3.1.-) / Acyl carrier protein of FASI / 3-oxoacyl-[acyl-carrier-protein] reductase of FASI (EC 1.1.1.100) / 3-oxoacyl-[acyl-carrier-protein] synthase of FASI (EC 2.3.1.41)","Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)","putative secreted protein","synonymous_variantLOW"]
[7739,"NC_000962",2855259,"A","G","2394.43","86.0","1.00","Synon","gct","gcC","2523T>C","Ala841Ala",null,"fig|83332.12.peg.2837","Rv2531c",null,"Arginine decarboxylase (EC 4.1.1.19)","antitoxin VapB39 @ Antitoxin to Toxin 1, PIN domain","FIG00822125: hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",2855259,"A","G",{"v":800786,"d":"800,786"},"25.0","1.00","Synon","gct","gcC","2523T>C","Ala841Ala",null,"fig|83332.12.peg.2837","Rv2531c",null,"Arginine decarboxylase (EC 4.1.1.19)","antitoxin VapB39 @ Antitoxin to Toxin 1, PIN domain","FIG00822125: hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",2855883,"A","G","2996.05","97.0","0.97","Synon","cat","caC","1899T>C","His633His",null,"fig|83332.12.peg.2837","Rv2531c",null,"Arginine decarboxylase (EC 4.1.1.19)","antitoxin VapB39 @ Antitoxin to Toxin 1, PIN domain","FIG00822125: hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",2856329,"TG","TAG","8140.15","254.0","0.98","Insertion","atcaaa","atCTAaa","1452_1453insT","Ile484_Lys485fs","yes","fig|83332.12.peg.2837","Rv2531c",null,"Arginine decarboxylase (EC 4.1.1.19)","antitoxin VapB39 @ Antitoxin to Toxin 1, PIN domain","FIG00822125: hypothetical protein","frameshift_variantHIGH"]
["G01222","NC_000962",2857707,"G","A",{"v":897372,"d":"897,372"},"29.0","0.97","Synon","acc","acT","75C>T","Thr25Thr",null,"fig|83332.12.peg.2837","Rv2531c",null,"Arginine decarboxylase (EC 4.1.1.19)","antitoxin VapB39 @ Antitoxin to Toxin 1, PIN domain","FIG00822125: hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",2857707,"G","A","6884.35","210.0","1.00","Synon","acc","acT","75C>T","Thr25Thr",null,"fig|83332.12.peg.2837","Rv2531c",null,"Arginine decarboxylase (EC 4.1.1.19)","antitoxin VapB39 @ Antitoxin to Toxin 1, PIN domain","FIG00822125: hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",2858669,"G","T","1395.48","47.0","0.96","Nonsyn","gcc","gAc","5C>A","Ala2Asp",null,"fig|83332.12.peg.2839","Rv2533c","nusB","Transcription termination protein NusB","FIG00822125: hypothetical protein","Translation elongation factor P","missense_variantMODERATE"]
[7739,"NC_000962",2865760,"A","G","2917.53","92.0","0.99","Nonsyn","acc","Gcc","631A>G","Thr211Ala",null,"fig|83332.12.peg.2848","Rv2542",null,"Putative transmembrane protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",2865882,"T","C","4428.76","139.0","1.00","Synon","gtt","gtC","753T>C","Val251Val",null,"fig|83332.12.peg.2848","Rv2542",null,"Putative transmembrane protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",2865882,"T","C","1629.61","56.0","0.98","Synon","gtt","gtC","753T>C","Val251Val",null,"fig|83332.12.peg.2848","Rv2542",null,"Putative transmembrane protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",2866551,"C","G","4490.47","155.0","0.95","Synon","gcc","gcG","84C>G","Ala28Ala",null,"fig|83332.12.peg.2849","Rv2543","lppA","hypothetical protein","Putative transmembrane protein","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",2866569,"C","A","5823.7","184.0","0.99","Synon","acc","acA","102C>A","Thr34Thr",null,"fig|83332.12.peg.2849","Rv2543","lppA","hypothetical protein","Putative transmembrane protein","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",2866569,"C","A","1333.17","47.0","0.94","Synon","acc","acA","102C>A","Thr34Thr",null,"fig|83332.12.peg.2849","Rv2543","lppA","hypothetical protein","Putative transmembrane protein","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",2866578,"CAA","AAG","7817.12","229.0","1.00","Nonsyn","cacaac","caAAGc","111CAA>AAG","HisAsn37GlnSer",null,"fig|83332.12.peg.2849","Rv2543","lppA","hypothetical protein","Putative transmembrane protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",2867207,"C","G","5624.79","222.0","1.00","Synon","gcc","gcG","84C>G","Ala28Ala",null,"fig|83332.12.peg.2850","Rv2544","lppB","hypothetical protein","hypothetical protein","antitoxin VapB18 @ Antitoxin to Toxin 1, PIN domain","synonymous_variantMODERATE"]
[7011,"NC_000962",2867347,"A","G",{"v":533384,"d":"533,384"},"50.0","1.00","Nonsyn","cag","cGg","224A>G","Gln75Arg",null,"fig|83332.12.peg.2850","Rv2544","lppB","hypothetical protein","hypothetical protein","antitoxin VapB18 @ Antitoxin to Toxin 1, PIN domain","missense_variantMODERATE"]
["G01492","NC_000962",2868926,"C","A","11516.7","378.0","0.96","Nonsyn","ctc","Atc","67C>A","Leu23Ile",null,"fig|83332.12.peg.2854","Rv2548",null,"toxin VapC19 @ Toxin 1, PIN domain","antitoxin VapB19 @ Antitoxin to Toxin 1, PIN domain","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",2868926,"C","A","2564.21","91.0","0.95","Nonsyn","ctc","Atc","67C>A","Leu23Ile",null,"fig|83332.12.peg.2854","Rv2548",null,"toxin VapC19 @ Toxin 1, PIN domain","antitoxin VapB19 @ Antitoxin to Toxin 1, PIN domain","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",2870386,"C","T","4950.25","154.0","1.00",{"$nulls":10},"antitoxin VapB20 @ Antitoxin to Toxin 1, PIN domain","probable type IV peptidase","intergenic_regionMODERATE"]
[54,"NC_000962",2870386,"C","T","8843.98","263.0","1.00",{"$nulls":10},"antitoxin VapB20 @ Antitoxin to Toxin 1, PIN domain","probable type IV peptidase","intergenic_regionMODIFIER"]
["G01491","NC_000962",2878980,"C","T","6132.78","194.0","1.00","Nonsyn","ggc","gAc","950G>A","Gly317Asp",null,"fig|83332.12.peg.2866","Rv2559c",null,"Replication-associated recombination protein RarA","Hypothetical protein Rv2558","PROBABLE PROLINE AND GLYCINE RICH TRANSMEMBRANE PROTEIN","missense_variantMODERATE"]
[64,"NC_000962",2878980,"C","T",{"v":389717,"d":"389,717"},"15.0","0.94","Nonsyn","ggc","gAc","950G>A","Gly317Asp",null,"fig|83332.12.peg.2866","Rv2559c",null,"Replication-associated recombination protein RarA","Hypothetical protein Rv2558","PROBABLE PROLINE AND GLYCINE RICH TRANSMEMBRANE PROTEIN","missense_variantLOW"]
[7739,"NC_000962",2880702,"G","C","2712.54","81.0","1.00","Nonsyn","gtc","Ctc","628G>C","Val210Leu",null,"fig|83332.12.peg.2867","Rv2560",null,"PROBABLE PROLINE AND GLYCINE RICH TRANSMEMBRANE PROTEIN","Replication-associated recombination protein RarA","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",2881485,"A","G","1292.67","43.0","0.98","Nonsyn","cac","cGc","77A>G","His26Arg",null,"fig|83332.12.peg.2869","Rv2561",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",2881597,"AGGGGGGC","AGGGGGC","2460.71","74.0","0.99","Deletion","ccaggggggcaa","ccAGGGGGCaa","195delG","Gly65fs","yes","fig|83332.12.peg.2869","Rv2561",null,"hypothetical protein","hypothetical protein","hypothetical protein","frameshift_variantMODIFIER"]
["G01492","NC_000962",2881597,"AGGGGGGC","AGGGGGC","5899.66","187.0","0.97","Deletion","ccaggggggcaa","ccAGGGGGCaa","195delG","Gly65fs","yes","fig|83332.12.peg.2869","Rv2561",null,"hypothetical protein","hypothetical protein","hypothetical protein","frameshift_variantMODIFIER"]
["G01222","NC_000962",2885723,"C","T",{"v":651355,"d":"651,355"},"20.0","1.00","Synon","agc","agT","1113C>T","Ser371Ser",null,"fig|83332.12.peg.2873","Rv2565",null,"hypothetical protein","ABC transporter, ATP-binding protein","Large protein containing transglutaminase-like domain","synonymous_variantLOW"]
["MP1","NC_000962",2885723,"C","T","7678.02","229.0","0.98","Synon","agc","agT","1113C>T","Ser371Ser",null,"fig|83332.12.peg.2873","Rv2565",null,"hypothetical protein","ABC transporter, ATP-binding protein","Large protein containing transglutaminase-like domain","synonymous_variantLOW"]
[64,"NC_000962",2886400,"G","A",{"v":482082,"d":"482,082"},"15.0","1.00",{"$nulls":10},"hypothetical protein","Large protein containing transglutaminase-like domain","intergenic_regionMODIFIER"]
[7739,"NC_000962",2886570,"A","G","2768.04","90.0","1.00","Synon","gaa","gaG","135A>G","Glu45Glu",null,"fig|83332.12.peg.2874","Rv2566",null,"Large protein containing transglutaminase-like domain","hypothetical protein","Protein containing domains DUF404, DUF407, DUF403","synonymous_variantLOW"]
["G01498","NC_000962",2887180,"G","T","2350.62","81.0","0.98","Nonsyn","gcc","Tcc","745G>T","Ala249Ser",null,"fig|83332.12.peg.2874","Rv2566",null,"Large protein containing transglutaminase-like domain","hypothetical protein","Protein containing domains DUF404, DUF407, DUF403","missense_variantMODERATE"]
["MP2","NC_000962",2887180,"G","T","6301.73","189.0","0.99","Nonsyn","gcc","Tcc","745G>T","Ala249Ser",null,"fig|83332.12.peg.2874","Rv2566",null,"Large protein containing transglutaminase-like domain","hypothetical protein","Protein containing domains DUF404, DUF407, DUF403","missense_variantMODERATE"]
["G01222","NC_000962",2888201,"T","C",{"v":922306,"d":"922,306"},"30.0","1.00","Nonsyn","ctc","cCc","1766T>C","Leu589Pro",null,"fig|83332.12.peg.2874","Rv2566",null,"Large protein containing transglutaminase-like domain","hypothetical protein","Protein containing domains DUF404, DUF407, DUF403","missense_variantLOW"]
["G01491","NC_000962",2888201,"T","C","6162.15","195.0","0.99","Nonsyn","ctc","cCc","1766T>C","Leu589Pro",null,"fig|83332.12.peg.2874","Rv2566",null,"Large protein containing transglutaminase-like domain","hypothetical protein","Protein containing domains DUF404, DUF407, DUF403","missense_variantLOW"]
[54,"NC_000962",2888201,"T","C",{"v":426286,"d":"426,286"},"14.0","1.00","Nonsyn","ctc","cCc","1766T>C","Leu589Pro",null,"fig|83332.12.peg.2874","Rv2566",null,"Large protein containing transglutaminase-like domain","hypothetical protein","Protein containing domains DUF404, DUF407, DUF403","missense_variantMODERATE"]
["MP2","NC_000962",2891267,"C","T","6119.42","182.0","1.00","Synon","ggc","ggT","1473C>T","Gly491Gly",null,"fig|83332.12.peg.2875","Rv2567",null,"Protein containing domains DUF404, DUF407, DUF403","Large protein containing transglutaminase-like domain","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",2891728,"A","G",{"v":217504,"d":"217,504"},"7.0","1.00","Nonsyn","cag","cGg","1934A>G","Gln645Arg",null,"fig|83332.12.peg.2875","Rv2567",null,"Protein containing domains DUF404, DUF407, DUF403","Large protein containing transglutaminase-like domain","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",2893507,"G","T","3965.03","123.0","1.00","Nonsyn","tct","tAt","815C>A","Ser272Tyr",null,"fig|83332.12.peg.2877","Rv2569c",null,"Protein containing transglutaminase-like domain, putative cysteine protease","hypothetical protein","YjbR family protein","missense_variantMODERATE"]
["G01492","NC_000962",2894208,"G","A","8452.34","284.0","0.97","Synon","agc","agT","114C>T","Ser38Ser",null,"fig|83332.12.peg.2877","Rv2569c",null,"Protein containing transglutaminase-like domain, putative cysteine protease","hypothetical protein","YjbR family protein","synonymous_variantLOW"]
["G01222","NC_000962",2894853,"G","A","774.94","25.0","1.00","Nonsyn","atg","atA","342G>A","Met114Ile",null,"fig|83332.12.peg.2878","Rv2570",null,"YjbR family protein","Protein containing transglutaminase-like domain, putative cysteine protease","putative membrane protein","missense_variantMODERATE"]
["MP1","NC_000962",2894853,"G","A","7008.28","205.0","1.00","Nonsyn","atg","atA","342G>A","Met114Ile",null,"fig|83332.12.peg.2878","Rv2570",null,"YjbR family protein","Protein containing transglutaminase-like domain, putative cysteine protease","putative membrane protein","missense_variantMODERATE"]
[54,"NC_000962",2894853,"G","A","3601.88","118.0","1.00","Nonsyn","atg","atA","342G>A","Met114Ile",null,"fig|83332.12.peg.2878","Rv2570",null,"YjbR family protein","Protein containing transglutaminase-like domain, putative cysteine protease","putative membrane protein","missense_variantMODERATE"]
["MP2","NC_000962",2896260,"G","A","6434.61","194.0","0.99","Nonsyn","gcg","gTg","1544C>T","Ala515Val",null,"fig|83332.12.peg.2880","Rv2572c","aspS","Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)","putative membrane protein","2-dehydropantoate 2-reductase (EC 1.1.1.169)","missense_variantMODERATE"]
[64,"NC_000962",2897871,"A","G","4298.64","130.0","0.98",{"$nulls":10},"Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)","2-dehydropantoate 2-reductase (EC 1.1.1.169)","intergenic_regionMODIFIER"]
[7739,"NC_000962",2900343,"G","A","3131.39","100.0","0.99","Synon","acc","acT","297C>T","Thr99Thr",null,"fig|83332.12.peg.2884","Rv2576c",null,"putative membrane protein","YpfJ protein, zinc metalloprotease superfamily","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",2901924,"G","A","1816.31","63.0","0.95","Nonsyn","cgc","cAc","1007G>A","Arg336His",null,"fig|83332.12.peg.2886","Rv2577",null,"Purple acid phosphatase","hypothetical protein","Radical SAM domain protein","missense_variantMODERATE"]
["G01491","NC_000962",2906715,"C","T","4169.04","132.0","0.99","Nonsyn","gtg","Atg","49G>A","Val17Met",null,"fig|83332.12.peg.2890","Rv2581c",null,"MBL-fold metallo-hydrolase superfamily","Histidyl-tRNA synthetase (EC 6.1.1.21)","Probable peptidyl-prolyl cis-trans isomerase B (EC 5.2.1.8) (PPIase B) (Rotamase B)","missense_variantMODERATE"]
[54,"NC_000962",2906715,"C","T","2804.98","89.0","1.00","Nonsyn","gtg","Atg","49G>A","Val17Met",null,"fig|83332.12.peg.2890","Rv2581c",null,"MBL-fold metallo-hydrolase superfamily","Histidyl-tRNA synthetase (EC 6.1.1.21)","Probable peptidyl-prolyl cis-trans isomerase B (EC 5.2.1.8) (PPIase B) (Rotamase B)","missense_variantMODERATE"]
["MP2","NC_000962",2910461,"G","T","5154.2","158.0","0.99","Nonsyn","gcg","gAg","284C>A","Ala95Glu",null,"fig|83332.12.peg.2893","Rv2584c","apt","Adenine phosphoribosyltransferase (EC 2.4.2.7)","Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II","Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)","missense_variantMODERATE"]
["MP1","NC_000962",2910461,"G","T","5287.55","158.0","0.99","Nonsyn","gcg","gAg","284C>A","Ala95Glu",null,"fig|83332.12.peg.2893","Rv2584c","apt","Adenine phosphoribosyltransferase (EC 2.4.2.7)","Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II","Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)","missense_variantMODERATE"]
[64,"NC_000962",2911293,"C","G","5929.11","183.0","0.99","Nonsyn","tgt","tCt","1322G>C","Cys441Ser",null,"fig|83332.12.peg.2894","Rv2585c",null,"Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)","Adenine phosphoribosyltransferase (EC 2.4.2.7)","Protein translocase subunit SecF","missense_variantMODERATE"]
[7739,"NC_000962",2911896,"G","A","3153.17","99.0","0.99","Nonsyn","acc","aTc","719C>T","Thr240Ile",null,"fig|83332.12.peg.2894","Rv2585c",null,"Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)","Adenine phosphoribosyltransferase (EC 2.4.2.7)","Protein translocase subunit SecF","missense_variantMODERATE"]
["G01498","NC_000962",2912294,"T","G","3067.32","102.0","0.99","Synon","gca","gcC","321A>C","Ala107Ala",null,"fig|83332.12.peg.2894","Rv2585c",null,"Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)","Adenine phosphoribosyltransferase (EC 2.4.2.7)","Protein translocase subunit SecF","synonymous_variantLOW"]
["G01492","NC_000962",2913087,"C","T","10101.7","325.0","0.99","Nonsyn","gcg","Acg","925G>A","Ala309Thr",null,"fig|83332.12.peg.2895","Rv2586c","secF","Protein translocase subunit SecF","Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)","Protein translocase subunit SecD","missense_variantMODERATE"]
["G01222","NC_000962",2913111,"G","T","1040.65","33.0","1.00","Nonsyn","ctg","Atg","901C>A","Leu301Met",null,"fig|83332.12.peg.2895","Rv2586c","secF","Protein translocase subunit SecF","Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)","Protein translocase subunit SecD","missense_variantMODERATE"]
["MP1","NC_000962",2913111,"G","T","7486.16","221.0","1.00","Nonsyn","ctg","Atg","901C>A","Leu301Met",null,"fig|83332.12.peg.2895","Rv2586c","secF","Protein translocase subunit SecF","Oligopeptide ABC transporter, substrate-binding protein OppA (TC 3.A.1.5.1)","Protein translocase subunit SecD","missense_variantMODERATE"]
[64,"NC_000962",2921373,"T","C",{"v":450837,"d":"450,837"},"16.0","0.89","Nonsyn","ctg","cCg","3503T>C","Leu1168Pro",null,"fig|83332.12.peg.2899","Rv2590","fadD9","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD9","Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)","PE_PGRS family protein ","missense_variantMODERATE"]
["MP2","NC_000962",2921373,"T","C","7943.16","228.0","1.00","Nonsyn","ctg","cCg","3503T>C","Leu1168Pro",null,"fig|83332.12.peg.2899","Rv2590","fadD9","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD9","Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)","PE_PGRS family protein ","missense_variantMODERATE"]
[58,"NC_000962",2922984,"T","C","1828.66","62.0","1.00","Synon","ggt","ggC","1434T>C","Gly478Gly",null,"fig|83332.12.peg.2900","Rv2591","PE_PGRS44","PE_PGRS family protein ","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD9","Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12)","synonymous_variantLOW"]
[7011,"NC_000962",2923391,"T","C","2535.16","82.0","1.00","Synon","cca","ccG","843A>G","Pro281Pro",null,"fig|83332.12.peg.2901","Rv2592c","ruvB","Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12)","PE_PGRS family protein ","Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12)","synonymous_variantMODERATE"]
["G01492","NC_000962",2925962,"T","C","13017.9","413.0","0.99","Nonsyn","tgc","Cgc","229T>C","Cys77Arg",null,"fig|83332.12.peg.2905","Rv2596",null,"toxin VapC40 @ Toxin 1, PIN domain","antitoxin VapB40 @ Antitoxin to Toxin 1, PIN domain","putative membrane protein","missense_variantMODERATE"]
["G01222","NC_000962",2927511,"G","T",{"v":742734,"d":"742,734"},"26.0","1.00","Nonsyn","agc","aTc","35G>T","Ser12Ile",null,"fig|83332.12.peg.2908","Rv2599",null,"putative membrane protein","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
["MP1","NC_000962",2927511,"G","T","6859.81","208.0","1.00","Nonsyn","agc","aTc","35G>T","Ser12Ile",null,"fig|83332.12.peg.2908","Rv2599",null,"putative membrane protein","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
[64,"NC_000962",2927939,"T","C","5290.9","157.0","1.00",{"$nulls":10},"putative membrane protein","putative membrane protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",2927939,"T","C","5995.29","176.0","1.00",{"$nulls":10},"putative membrane protein","putative membrane protein","intergenic_regionMODIFIER"]
[64,"NC_000962",2927973,"C","A","1876.44","61.0","0.98",{"$nulls":10},"putative membrane protein","putative membrane protein","intergenic_regionLOW"]
[7739,"NC_000962",2935886,"C","T","2685.34","88.0","1.00","Nonsyn","ccg","Tcg","841C>T","Pro281Ser",null,"fig|83332.12.peg.2918","Rv2608","PPE42","PPE family protein, MPTR subgroup ","Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)","FIG019327: membrane domain / Dihydroneopterin triphosphate pyrophosphohydolase, putative, Actinobacterial type, NudB-like","missense_variantMODIFIER"]
["G01498","NC_000962",2939373,"G","C","3048.32","98.0","1.00","Nonsyn","tct","tGt","539C>G","Ser180Cys",null,"fig|83332.12.peg.2921","Rv2611c",null,"Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis (Lauroyl/myristoyl acyltransferase)","Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)","Phosphatidylinositol phosphate synthase @ Archaetidylinositol phosphate synthase (EC 2.7.8.39)","missense_variantMODERATE"]
["G01491","NC_000962",2939657,"T","C","3363.61","104.0","0.99","Nonsyn","ata","atG","255A>G","Ile85Met",null,"fig|83332.12.peg.2921","Rv2611c",null,"Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis (Lauroyl/myristoyl acyltransferase)","Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)","Phosphatidylinositol phosphate synthase @ Archaetidylinositol phosphate synthase (EC 2.7.8.39)","missense_variantMODERATE"]
[54,"NC_000962",2939657,"T","C","2909.59","92.0","0.96","Nonsyn","ata","atG","255A>G","Ile85Met",null,"fig|83332.12.peg.2921","Rv2611c",null,"Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis (Lauroyl/myristoyl acyltransferase)","Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)","Phosphatidylinositol phosphate synthase @ Archaetidylinositol phosphate synthase (EC 2.7.8.39)","missense_variantLOW"]
["MP2","NC_000962",2942263,"T","G","6947.57","201.0","1.00","Synon","gga","ggC","1302A>C","Gly434Gly",null,"fig|83332.12.peg.2924","Rv2614c","thrS","Threonyl-tRNA synthetase (EC 6.1.1.3)","FIG049476: HIT family protein","PE_PGRS family protein ","synonymous_variantLOW"]
[58,"NC_000962",2943411,"T","C","2219.96","71.0","0.96","Nonsyn","aag","Gag","154A>G","Lys52Glu",null,"fig|83332.12.peg.2924","Rv2614c","thrS","Threonyl-tRNA synthetase (EC 6.1.1.3)","FIG049476: HIT family protein","PE_PGRS family protein ","missense_variantMODERATE"]
[7011,"NC_000962",2948095,"G","A","2697.27","85.0","0.99","Nonsyn","tcc","tTc","464C>T","Ser155Phe",null,"fig|83332.12.peg.2931","Rv2621c",null,"Putative transcriptional regulatory protein","putative membrane protein","Possible methyltransferase (Methylase)","missense_variantLOW"]
[7739,"NC_000962",2948095,"G","A","2941.96","91.0","0.98","Nonsyn","tcc","tTc","464C>T","Ser155Phe",null,"fig|83332.12.peg.2931","Rv2621c",null,"Putative transcriptional regulatory protein","putative membrane protein","Possible methyltransferase (Methylase)","missense_variantLOW"]
["G01498","NC_000962",2953155,"G","A","1150.3","44.0","0.83",{"$nulls":10},"CBS domain protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",2953307,"G","T","2125.94","67.0","0.99",{"$nulls":10},"CBS domain protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",2954439,"T","C","1118.16","36.0","1.00","Nonsyn","aga","Gga","235A>G","Arg79Gly",null,"fig|83332.12.peg.2937","Rv2627c",null,"hypothetical protein","CBS domain protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",2954439,"T","C","9082.12","266.0","1.00","Nonsyn","aga","Gga","235A>G","Arg79Gly",null,"fig|83332.12.peg.2937","Rv2627c",null,"hypothetical protein","CBS domain protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",2955233,"C","T",{"v":927584,"d":"927,584"},"33.0","0.89","Nonsyn","tcg","tTg","86C>T","Ser29Leu",null,"fig|83332.12.peg.2938","Rv2628",null,"hypothetical protein","hypothetical protein","hypothetical protein Rv2629","missense_variantMODERATE"]
[7739,"NC_000962",2955305,"T","G","2645.29","86.0","0.97","Nonsyn","ttg","tGg","158T>G","Leu53Trp",null,"fig|83332.12.peg.2938","Rv2628",null,"hypothetical protein","hypothetical protein","hypothetical protein Rv2629","missense_variantMODERATE"]
["G01498","NC_000962",2957568,"CTT","CT","2645.11","90.0","0.92","Deletion",{"$nulls":9},"Archease","RNA-2',3'-PO4:RNA-5'-OH ligase","intergenic_regionMODIFIER"]
[7011,"NC_000962",2957568,"CTT","CT","2710.96","80.0","0.91","Deletion",{"$nulls":9},"Archease","RNA-2',3'-PO4:RNA-5'-OH ligase","intergenic_regionMODIFIER"]
["G01492","NC_000962",2959324,"A","G","12930.2","416.0","0.99",{"$nulls":10},"hypothetical protein","Hemerythrin domain protein","intergenic_regionLOW"]
["G01222","NC_000962",2963166,"G","A",{"v":647078,"d":"647,078"},"22.0","1.00","Nonsyn","gta","Ata","397G>A","Val133Ile",null,"fig|83332.12.peg.2946","Rv2636",null,"Putative O-phosphotransferase (EC 2.7.1.-)","PE_PGRS family protein ","DedA protein","missense_variantMODERATE"]
["MP1","NC_000962",2963166,"G","A","5933.7","177.0","0.99","Nonsyn","gta","Ata","397G>A","Val133Ile",null,"fig|83332.12.peg.2946","Rv2636",null,"Putative O-phosphotransferase (EC 2.7.1.-)","PE_PGRS family protein ","DedA protein","missense_variantMODERATE"]
[64,"NC_000962",2965391,"GCCCCCCA","GCCCCCA","1000.72","31.0","0.91","Deletion",{"$nulls":9},"Protein of unknown function UPF0060","Transcriptional regulator, ArsR family","intergenic_regionMODIFIER"]
["MP2","NC_000962",2968468,"G","C","7976.25","231.0","1.00",{"$nulls":10},"Arsenical-resistance protein ACR3","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",2969035,"G","T","2661.52","89.0","1.00","Nonsyn","cgc","cTc","89G>T","Arg30Leu",null,"fig|83332.12.peg.2955",null,null,"hypothetical protein","hypothetical protein","tRNA-Val-CAC","missense_variantMODERATE"]
["G01492","NC_000962",2969403,"C","A","9083.0","293.0","0.99",{"$nulls":10},"hypothetical protein","tRNA-Val-CAC","intergenic_regionMODIFIER"]
["G01498","NC_000962",2969403,"C","A","2632.07","91.0","0.97",{"$nulls":10},"hypothetical protein","tRNA-Val-CAC","intergenic_regionMODIFIER"]
["G01491","NC_000962",2970902,"C","T","4803.47","152.0","0.99","Nonsyn","cac","Tac","352C>T","His118Tyr",null,"fig|83332.12.peg.2957","Rv2646",null,"Phage integrase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",2970902,"C","T","5355.26","183.0","1.00","Nonsyn","cac","Tac","352C>T","His118Tyr",null,"fig|83332.12.peg.2957","Rv2646",null,"Phage integrase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",2971122,"T","C","6391.59","185.0","1.00","Nonsyn","atc","aCc","572T>C","Ile191Thr",null,"fig|83332.12.peg.2957","Rv2646",null,"Phage integrase","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",2974933,"A","G",{"v":554417,"d":"554,417"},"22.0","0.96","Nonsyn","atc","aCc","302T>C","Ile101Thr",null,"fig|83332.12.peg.2962","Rv2650c",null,"Phage major capsid protein","hypothetical protein","PhiRv1 phage, prohead protease, HK97 family","missense_variantMODERATE"]
[7011,"NC_000962",2975227,"T","G","2606.01","78.0","1.00","Nonsyn","aat","aCt","8A>C","Asn3Thr",null,"fig|83332.12.peg.2962","Rv2650c",null,"Phage major capsid protein","hypothetical protein","PhiRv1 phage, prohead protease, HK97 family","missense_variantMODERATE"]
["G01492","NC_000962",2976530,"G","T","14226.5","458.0","1.00",{"$nulls":10},"Phage terminase, small subunit","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",2976565,"C","T","1286.36","42.0","1.00",{"$nulls":10},"Phage terminase, small subunit","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",2976565,"C","T","7035.73","207.0","1.00",{"$nulls":10},"Phage terminase, small subunit","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",2976575,"G","A","1166.71","41.0","1.00",{"$nulls":10},"Phage terminase, small subunit","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",2976575,"G","A","6848.37","210.0","1.00",{"$nulls":10},"Phage terminase, small subunit","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",2976616,"G","C","3702.19","117.0","1.00","Nonsyn","cac","caG","294C>G","His98Gln",null,"fig|83332.12.peg.2965","Rv2653c",null,"hypothetical protein","Phage terminase, small subunit","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",2978924,"C","T","2135.57","74.0","1.00","Synon","gtg","gtA","129G>A","Val43Val",null,"fig|83332.12.peg.2968","Rv2656c",null,"hypothetical protein","Uncharacterized protein Rv2655c and similar","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",2984740,"A","G","1857.1","64.0","0.98","Nonsyn","cac","cGc","8A>G","His3Arg",null,"fig|83332.12.peg.2978","Rv2668",null,"FIG01368946: Putative alanine and valine rich exported protein","ATP-dependent Clp protease, ATP-binding subunit ClpC","Uncharacterized N-acetyltransferase (EC 2.3.1.-)","missense_variantMODERATE"]
["G01491","NC_000962",2985216,"G","A","6109.23","191.0","0.99","Nonsyn","gag","Aag","484G>A","Glu162Lys",null,"fig|83332.12.peg.2978","Rv2668",null,"FIG01368946: Putative alanine and valine rich exported protein","ATP-dependent Clp protease, ATP-binding subunit ClpC","Uncharacterized N-acetyltransferase (EC 2.3.1.-)","missense_variantMODERATE"]
[54,"NC_000962",2985216,"G","A","14464.5","432.0","1.00","Nonsyn","gag","Aag","484G>A","Glu162Lys",null,"fig|83332.12.peg.2978","Rv2668",null,"FIG01368946: Putative alanine and valine rich exported protein","ATP-dependent Clp protease, ATP-binding subunit ClpC","Uncharacterized N-acetyltransferase (EC 2.3.1.-)","missense_variantMODERATE"]
["G01222","NC_000962",2988630,"C","G","1103.04","36.0","1.00","Nonsyn","cat","Gat","940C>G","His314Asp",null,"fig|83332.12.peg.2982","Rv2672",null,"Hypothetical secreted protease","Dihydrofolate reductase analogue (EC 1.5.1.3) ","Arabinofuranan 3-O-arabinosyltransferase AftC (EC 2.4.2.47)","missense_variantMODERATE"]
["MP1","NC_000962",2988630,"C","G","5114.64","152.0","1.00","Nonsyn","cat","Gat","940C>G","His314Asp",null,"fig|83332.12.peg.2982","Rv2672",null,"Hypothetical secreted protease","Dihydrofolate reductase analogue (EC 1.5.1.3) ","Arabinofuranan 3-O-arabinosyltransferase AftC (EC 2.4.2.47)","missense_variantMODERATE"]
[64,"NC_000962",2991694,"C","G",{"v":630051,"d":"630,051"},"22.0","0.92","Synon","tcg","tcC","243G>C","Ser81Ser",null,"fig|83332.12.peg.2985","Rv2675c",null,"Methyltransferase (EC 2.1.1.-) colocalized with Q","Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12)","Coproheme decarboxylase HemQ (no EC)","synonymous_variantLOW"]
[7011,"NC_000962",2994187,"T","C","2924.3","91.0","1.00","Synon","tta","ttG","903A>G","Leu301Leu",null,"fig|83332.12.peg.2988","Rv2678c","hemE","Uroporphyrinogen III decarboxylase (EC 4.1.1.37)","Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)","Enoyl-CoA hydratase (EC 4.2.1.17)","synonymous_variantLOW"]
[7011,"NC_000962",2996194,"T","A","3521.64","112.0","1.00","Synon","gtt","gtA","192T>A","Val64Val",null,"fig|83332.12.peg.2990","Rv2680",null,"Uncharacterized protein Q1 colocalized with Q","Enoyl-CoA hydratase (EC 4.2.1.17)","Ribonuclease D (EC 3.1.26.3)","synonymous_variantLOW"]
["G01492","NC_000962",2997386,"C","T","12403.9","416.0","0.97","Synon","cac","caT","546C>T","His182His",null,"fig|83332.12.peg.2991","Rv2681",null,"Ribonuclease D (EC 3.1.26.3)","Uncharacterized protein Q1 colocalized with Q","1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)","synonymous_variantLOW"]
["G01222","NC_000962",2998012,"C","T",{"v":598268,"d":"598,268"},"20.0","1.00","Nonsyn","aca","aTa","1172C>T","Thr391Ile",null,"fig|83332.12.peg.2991","Rv2681",null,"Ribonuclease D (EC 3.1.26.3)","Uncharacterized protein Q1 colocalized with Q","1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)","missense_variantMODERATE"]
["MP1","NC_000962",2998012,"C","T","4048.89","122.0","0.99","Nonsyn","aca","aTa","1172C>T","Thr391Ile",null,"fig|83332.12.peg.2991","Rv2681",null,"Ribonuclease D (EC 3.1.26.3)","Uncharacterized protein Q1 colocalized with Q","1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)","missense_variantMODERATE"]
[54,"NC_000962",2998012,"C","T","1661.68","56.0","1.00","Nonsyn","aca","aTa","1172C>T","Thr391Ile",null,"fig|83332.12.peg.2991","Rv2681",null,"Ribonuclease D (EC 3.1.26.3)","Uncharacterized protein Q1 colocalized with Q","1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)","missense_variantMODERATE"]
["MP2","NC_000962",3000362,"T","C","7369.99","219.0","1.00","Nonsyn","tta","tCa","251T>C","Leu84Ser",null,"fig|83332.12.peg.2994","Rv2683",null,"FIG00822000: hypothetical protein","hypothetical protein","putative anion permease","missense_variantMODERATE"]
[58,"NC_000962",3000734,"A","C","1808.76","59.0","1.00","Nonsyn","aca","Cca","121A>C","Thr41Pro",null,"fig|83332.12.peg.2995","Rv2684","arsA","putative anion permease","FIG00822000: hypothetical protein","putative anion permease","missense_variantMODERATE"]
[7011,"NC_000962",3003115,"C","G","3488.55","109.0","1.00","Nonsyn","gca","gGa","1133C>G","Ala378Gly",null,"fig|83332.12.peg.2996","Rv2685","arsB1","putative anion permease","putative anion permease","PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND ALANINE AND VALINE RICH PROTEIN ABC TRANSPORTER","missense_variantMODERATE"]
["G01492","NC_000962",3005185,"G","T","7418.72","234.0","1.00","Nonsyn","ccc","Acc","466C>A","Pro156Thr",null,"fig|83332.12.peg.2999","Rv2688c",null,"Efflux ABC transporter, ATP-binding protein","PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND VALINE RICH PROTEIN ABC TRANSPORTER","23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190)","missense_variantMODERATE"]
["G01222","NC_000962",3006898,"G","A",{"v":492572,"d":"492,572"},"18.0","1.00","Synon","tac","taT","165C>T","Tyr55Tyr",null,"fig|83332.12.peg.3000","Rv2689c",null,"23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190)","Efflux ABC transporter, ATP-binding protein","Uncharacterized amino acid permease, GabP family","synonymous_variantLOW"]
["MP1","NC_000962",3006898,"G","A","7854.84","228.0","1.00","Synon","tac","taT","165C>T","Tyr55Tyr",null,"fig|83332.12.peg.3000","Rv2689c",null,"23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190)","Efflux ABC transporter, ATP-binding protein","Uncharacterized amino acid permease, GabP family","synonymous_variantLOW"]
["MP2","NC_000962",3007238,"A","G","6363.21","192.0","0.99","Nonsyn","tga","Cga","1972T>C","Ter658Argext*?",null,"fig|83332.12.peg.3001","Rv2690c",null,"Uncharacterized amino acid permease, GabP family","23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190)","TrkA-like protein","stop_lostHIGH"]
["MP1","NC_000962",3007238,"A","G","7331.92","222.0","1.00","Nonsyn","tga","Cga","1972T>C","Ter658Argext*?",null,"fig|83332.12.peg.3001","Rv2690c",null,"Uncharacterized amino acid permease, GabP family","23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190)","TrkA-like protein","stop_lostHIGH"]
[64,"NC_000962",3009692,"A","G","1706.47","54.0","1.00","Nonsyn","acc","Gcc","349A>G","Thr117Ala",null,"fig|83332.12.peg.3002","Rv2691","ceoB","TrkA-like protein","Uncharacterized amino acid permease, GabP family","TrkA-like protein","missense_variantMODERATE"]
[7739,"NC_000962",3010420,"A","G","3203.93","97.0","1.00","Nonsyn","atc","Gtc","367A>G","Ile123Val",null,"fig|83332.12.peg.3003","Rv2692","ceoC","TrkA-like protein","TrkA-like protein","Uncharacterized DUF3159 protein Rv2693c","missense_variantMODERATE"]
["G01498","NC_000962",3011566,"G","T","2496.4","89.0","0.96","Nonsyn","cgc","Agc","202C>A","Arg68Ser",null,"fig|83332.12.peg.3005","Rv2694c",null,"OB-fold nucleic acid binding protein","Uncharacterized DUF3159 protein Rv2693c","FIG00821557: hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",3012293,"A","G","6363.21","196.0","0.98","Synon","aca","acG","378A>G","Thr126Thr",null,"fig|83332.12.peg.3006","Rv2695",null,"FIG00821557: hypothetical protein","OB-fold nucleic acid binding protein","FIG00822685: hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",3012293,"A","G",{"v":445131,"d":"445,131"},"16.0","0.89","Synon","aca","acG","378A>G","Thr126Thr",null,"fig|83332.12.peg.3006","Rv2695",null,"FIG00821557: hypothetical protein","OB-fold nucleic acid binding protein","FIG00822685: hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",3016735,"C","G","6854.55","202.0","1.00","Nonsyn","gtg","Ctg","1G>C","Val1Leu",null,"fig|83332.12.peg.3012","Rv2701c","suhB","Inositol-1-monophosphatase (EC 3.1.3.25)","Possible secreted alanine rich protein","Polyphosphate glucokinase (EC 2.7.1.63)","missense_variantMODERATE"]
[58,"NC_000962",3017465,"T","C","2953.89","91.0","0.99","Nonsyn","ata","aCa","608T>C","Ile203Thr",null,"fig|83332.12.peg.3013","Rv2702","ppgK","Polyphosphate glucokinase (EC 2.7.1.63)","Inositol-1-monophosphatase (EC 3.1.3.25)","RNA polymerase sigma factor RpoD","missense_variantMODERATE"]
[64,"NC_000962",3017465,"T","C","2846.88","87.0","0.99","Nonsyn","ata","aCa","608T>C","Ile203Thr",null,"fig|83332.12.peg.3013","Rv2702","ppgK","Polyphosphate glucokinase (EC 2.7.1.63)","Inositol-1-monophosphatase (EC 3.1.3.25)","RNA polymerase sigma factor RpoD","missense_variantLOW"]
[7739,"NC_000962",3022136,"C","T","2214.19","83.0","0.98","Nonsyn","cga","Tga","280C>T","Arg94*",null,"fig|83332.12.peg.3020","Rv2709",null,"putative membrane protein","Uncharacterized protein Rv2708c","RNA polymerase sigma factor SigB","stop_gainedLOW"]
[7011,"NC_000962",3027606,"C","G","2656.15","84.0","0.98","Nonsyn","tcg","tGg","542C>G","Ser181Trp",null,"fig|83332.12.peg.3026","Rv2714",null,"FIG00821757: hypothetical protein","hypothetical protein","Hydrolase, alpha/beta fold family","missense_variantMODERATE"]
["G01492","NC_000962",3027798,"T","C","7319.37","235.0","1.00","Nonsyn","gtg","gCg","734T>C","Val245Ala",null,"fig|83332.12.peg.3026","Rv2714",null,"FIG00821757: hypothetical protein","hypothetical protein","Hydrolase, alpha/beta fold family","missense_variantMODERATE"]
["G01222","NC_000962",3031168,"A","G",{"v":815756,"d":"815,756"},"28.0","1.00","Nonsyn","tat","Cat","163T>C","Tyr55His",null,"fig|83332.12.peg.3031","Rv2719c",null,"putative membrane protein","Ribonucleotide reductase transcriptional regulator NrdR","SOS-response repressor and protease LexA (EC 3.4.21.88)","missense_variantMODIFIER"]
["MP1","NC_000962",3031168,"A","G","4736.89","142.0","1.00","Nonsyn","tat","Cat","163T>C","Tyr55His",null,"fig|83332.12.peg.3031","Rv2719c",null,"putative membrane protein","Ribonucleotide reductase transcriptional regulator NrdR","SOS-response repressor and protease LexA (EC 3.4.21.88)","missense_variantMODIFIER"]
[64,"NC_000962",3041871,"G","T","1529.91","52.0","1.00","Nonsyn","gcg","gAg","605C>A","Ala202Glu",null,"fig|83332.12.peg.3040","Rv2729c",null,"FIG01334132: Putative conserved alanine, valine and leucine rich integral membrane protein","FIG00820085: hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",3053940,"GTTTTTA","GTTTTA","2814.18","86.0","1.00","Deletion","gagttttta","gaGTTTTA","32delT","Leu11fs","yes","fig|83332.12.peg.3054","Rv2741","PE_PGRS47","PE_PGRS family protein ","hypothetical protein","hypothetical protein","frameshift_variantHIGH"]
[58,"NC_000962",3053940,"GTTTTTA","GTTTTA","6539.79","203.0","0.95","Deletion","gagttttta","gaGTTTTA","32delT","Leu11fs","yes","fig|83332.12.peg.3054","Rv2741","PE_PGRS47","PE_PGRS family protein ","hypothetical protein","hypothetical protein","frameshift_variantHIGH"]
[7011,"NC_000962",3054081,"A","G","3327.96","102.0","1.00","Synon","gga","ggG","168A>G","Gly56Gly",null,"fig|83332.12.peg.3054","Rv2741","PE_PGRS47","PE_PGRS family protein ","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",3054321,"A","G","8004.34","261.0","1.00","Synon","gga","ggG","408A>G","Gly136Gly",null,"fig|83332.12.peg.3054","Rv2741","PE_PGRS47","PE_PGRS family protein ","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",3063663,"C","A",{"v":622735,"d":"622,735"},"21.0","1.00","Nonsyn","acc","aAc","26C>A","Thr9Asn",null,"fig|83332.12.peg.3067","Rv2751",null,"O-Methyltransferase involved in polyketide biosynthesis","Oxidoreductase, short-chain dehydrogenase/reductase family","Ribonuclease J2 (endoribonuclease in RNA processing)","missense_variantMODERATE"]
[54,"NC_000962",3063663,"C","A","1557.04","57.0","0.98","Nonsyn","acc","aAc","26C>A","Thr9Asn",null,"fig|83332.12.peg.3067","Rv2751",null,"O-Methyltransferase involved in polyketide biosynthesis","Oxidoreductase, short-chain dehydrogenase/reductase family","Ribonuclease J2 (endoribonuclease in RNA processing)","missense_variantMODERATE"]
["MP2","NC_000962",3063872,"C","T","6814.46","199.0","1.00","Nonsyn","cgc","Tgc","235C>T","Arg79Cys",null,"fig|83332.12.peg.3067","Rv2751",null,"O-Methyltransferase involved in polyketide biosynthesis","Oxidoreductase, short-chain dehydrogenase/reductase family","Ribonuclease J2 (endoribonuclease in RNA processing)","missense_variantLOW"]
[58,"NC_000962",3069167,"A","G","5027.27","149.0","0.99","Nonsyn","ctg","cCg","917T>C","Leu306Pro",null,"fig|83332.12.peg.3073","Rv2756c","hsdM","Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)","hypothetical protein","VapC21 antibacterial toxin protein / Toxin 1, PIN domain","missense_variantMODERATE"]
[7011,"NC_000962",3069385,"G","A","2435.46","90.0","0.97","Synon","ggc","ggT","699C>T","Gly233Gly",null,"fig|83332.12.peg.3073","Rv2756c","hsdM","Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)","hypothetical protein","VapC21 antibacterial toxin protein / Toxin 1, PIN domain","synonymous_variantLOW"]
[7739,"NC_000962",3069385,"G","A","3004.84","112.0","0.96","Synon","ggc","ggT","699C>T","Gly233Gly",null,"fig|83332.12.peg.3073","Rv2756c","hsdM","Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)","hypothetical protein","VapC21 antibacterial toxin protein / Toxin 1, PIN domain","synonymous_variantLOW"]
["G01498","NC_000962",3069805,"G","C","1734.3","55.0","0.98","Synon","gtc","gtG","279C>G","Val93Val",null,"fig|83332.12.peg.3073","Rv2756c","hsdM","Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)","hypothetical protein","VapC21 antibacterial toxin protein / Toxin 1, PIN domain","synonymous_variantLOW"]
["G01491","NC_000962",3077291,"G","C","6369.94","197.0","1.00","Nonsyn","ccc","cGc","746C>G","Pro249Arg",null,"fig|83332.12.peg.3086","Rv2768c","PPE43","PPE family protein, SVP subgroup ","hypothetical protein","PE family protein ","missense_variantMODERATE"]
[54,"NC_000962",3077291,"G","C","2966.01","95.0","0.98","Nonsyn","ccc","cGc","746C>G","Pro249Arg",null,"fig|83332.12.peg.3086","Rv2768c","PPE43","PPE family protein, SVP subgroup ","hypothetical protein","PE family protein ","missense_variantMODERATE"]
["MP2","NC_000962",3078143,"C","A","4713.21","142.0","0.99",{"$nulls":10},"PPE family protein, SVP subgroup ","PE family protein ","intergenic_regionMODIFIER"]
[58,"NC_000962",3078178,"C","T","1304.18","43.0","1.00","Nonsyn","gtg","Atg","808G>A","Val270Met",null,"fig|83332.12.peg.3087","Rv2769c","PE27","PE family protein ","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
[7011,"NC_000962",3078826,"G","A","2171.34","68.0","1.00","Nonsyn","ccg","Tcg","160C>T","Pro54Ser",null,"fig|83332.12.peg.3087","Rv2769c","PE27","PE family protein ","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
[54,"NC_000962",3078826,"G","A","10323.4","323.0","0.99","Nonsyn","ccg","Tcg","160C>T","Pro54Ser",null,"fig|83332.12.peg.3087","Rv2769c","PE27","PE family protein ","PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
[7011,"NC_000962",3079877,"A","G","3042.86","94.0","0.99","Nonsyn","ttc","tCc","539T>C","Phe180Ser",null,"fig|83332.12.peg.3088","Rv2770c","PPE44","PPE family protein, SVP subgroup ","PE family protein ","Multimeric flavodoxin WrbA","missense_variantMODERATE"]
["G01492","NC_000962",3080795,"A","G","10517.3","341.0","1.00","Nonsyn","ctc","cCc","239T>C","Leu80Pro",null,"fig|83332.12.peg.3089","Rv2771c",null,"Multimeric flavodoxin WrbA","PPE family protein, SVP subgroup ","Membrane protein","missense_variantMODERATE"]
["G01222","NC_000962",3083173,"C","T",{"v":720678,"d":"720,678"},"27.0","0.93","Nonsyn","ctc","Ttc","328C>T","Leu110Phe",null,"fig|83332.12.peg.3094","Rv2775",null,"Acetyltransferase, GNAT family","hypothetical protein","Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)","missense_variantHIGH"]
["MP1","NC_000962",3083173,"C","T","7585.82","255.0","0.98","Nonsyn","ctc","Ttc","328C>T","Leu110Phe",null,"fig|83332.12.peg.3094","Rv2775",null,"Acetyltransferase, GNAT family","hypothetical protein","Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)","missense_variantMODERATE"]
[64,"NC_000962",3083527,"C","T",{"v":666642,"d":"666,642"},"22.0","1.00","Synon","acg","acA","924G>A","Thr308Thr",null,"fig|83332.12.peg.3095","Rv2776c",null,"Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)","Acetyltransferase, GNAT family","FF domain protein","synonymous_variantLOW"]
[7739,"NC_000962",3086424,"G","T","2624.15","84.0","0.99","Nonsyn","cgc","Agc","229C>A","Arg77Ser",null,"fig|83332.12.peg.3098","Rv2779c",null,"Transcriptional regulator Rv2779c, AsnC family","hypothetical protein","Alanine dehydrogenase (EC 1.4.1.1)","missense_variantMODERATE"]
["G01498","NC_000962",3086728,"C","T","2161.05","72.0","0.95",{"$nulls":10},"Transcriptional regulator Rv2779c, AsnC family","Alanine dehydrogenase (EC 1.4.1.1)","intergenic_regionMODIFIER"]
["G01491","NC_000962",3086788,"T","C","3868.27","121.0","1.00",{"$nulls":10},"Transcriptional regulator Rv2779c, AsnC family","Alanine dehydrogenase (EC 1.4.1.1)","intergenic_regionMODIFIER"]
["G01492","NC_000962",3086788,"T","C","9611.98","297.0","0.99",{"$nulls":10},"Transcriptional regulator Rv2779c, AsnC family","Alanine dehydrogenase (EC 1.4.1.1)","intergenic_regionMODIFIER"]
["G01222","NC_000962",3087084,"CAG","CG","1185.78","39.0","1.00","Deletion","cag","CG","266delA","Gln89fs","yes","fig|83332.12.peg.3099","Rv2780","ald","Alanine dehydrogenase (EC 1.4.1.1)","Transcriptional regulator Rv2779c, AsnC family","putative oxidoreductase, nitronate monooxygenase family","frameshift_variantHIGH"]
[7011,"NC_000962",3088625,"A","G","3483.61","107.0","0.99","Synon","gtt","gtC","360T>C","Val120Val",null,"fig|83332.12.peg.3100","Rv2781c",null,"putative oxidoreductase, nitronate monooxygenase family","Alanine dehydrogenase (EC 1.4.1.1)","FIG007959: peptidase, M16 family","synonymous_variantMODERATE"]
["MP2","NC_000962",3088625,"A","G","7351.53","214.0","1.00","Synon","gtt","gtC","360T>C","Val120Val",null,"fig|83332.12.peg.3100","Rv2781c",null,"putative oxidoreductase, nitronate monooxygenase family","Alanine dehydrogenase (EC 1.4.1.1)","FIG007959: peptidase, M16 family","synonymous_variantMODERATE"]
[58,"NC_000962",3090780,"C","T","2073.73","63.0","1.00","Synon","aag","aaA","1818G>A","Lys606Lys",null,"fig|83332.12.peg.3102","Rv2783c","gpsI","Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)","FIG007959: peptidase, M16 family","Lipoprotein LppU","synonymous_variantLOW"]
[7011,"NC_000962",3091440,"T","G","2494.03","86.0","0.95","Synon","aca","acC","1158A>C","Thr386Thr",null,"fig|83332.12.peg.3102","Rv2783c","gpsI","Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)","FIG007959: peptidase, M16 family","Lipoprotein LppU","synonymous_variantMODERATE"]
["G01492","NC_000962",3097369,"C","T","9748.96","327.0","0.97","Synon","gac","gaT","411C>T","AsMP137Asp",null,"fig|83332.12.peg.3107","Rv2788","sirR","Mn-dependent transcriptional regulator MntR","hypothetical protein","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE21","synonymous_variantLOW"]
["G01222","NC_000962",3104189,"A","G",{"v":671447,"d":"671,447"},"21.0","1.00","Synon","tgt","tgC","723T>C","Cys241Cys",null,"fig|83332.12.peg.3114","Rv2795c",null,"Metallophosphoesterase, SimX4 hydrolase","4'-phosphopantetheinyl transferase EntD (EC 2.7.8.-)","PROBABLE CONSERVED LIPOPROTEIN LPPV","synonymous_variantLOW"]
["G01491","NC_000962",3104189,"A","G","4378.22","139.0","1.00","Synon","tgt","tgC","723T>C","Cys241Cys",null,"fig|83332.12.peg.3114","Rv2795c",null,"Metallophosphoesterase, SimX4 hydrolase","4'-phosphopantetheinyl transferase EntD (EC 2.7.8.-)","PROBABLE CONSERVED LIPOPROTEIN LPPV","synonymous_variantLOW"]
[54,"NC_000962",3104189,"A","G","3474.97","114.0","0.97","Synon","tgt","tgC","723T>C","Cys241Cys",null,"fig|83332.12.peg.3114","Rv2795c",null,"Metallophosphoesterase, SimX4 hydrolase","4'-phosphopantetheinyl transferase EntD (EC 2.7.8.-)","PROBABLE CONSERVED LIPOPROTEIN LPPV","synonymous_variantLOW"]
["MP2","NC_000962",3105144,"C","A","4552.81","133.0","1.00","Nonsyn","tgc","tTc","476G>T","Cys159Phe",null,"fig|83332.12.peg.3115","Rv2796c","lppV","PROBABLE CONSERVED LIPOPROTEIN LPPV","Metallophosphoesterase, SimX4 hydrolase","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",3109886,"G","A","1114.02","42.0","0.98","Nonsyn","gcc","Acc","1471G>A","Ala491Thr",null,"fig|83332.12.peg.3119","Rv2800",null,"Putative hydrolase","putative membrane protein","Programmed cell death toxin YdcE","missense_variantMODERATE"]
[7011,"NC_000962",3112877,"G","A","2858.42","93.0","1.00","Nonsyn","ggc","gAc","38G>A","Gly13Asp",null,"fig|83332.12.peg.3126","Rv2805",null,"Mobile element protein","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
["G01222","NC_000962",3113872,"A","T","1273.4","43.0","0.98","Nonsyn","gag","gTg","215A>T","Glu72Val",null,"fig|83332.12.peg.3129","Rv2807",null,"Mobile element protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",3114916,"C","A","3176.37","101.0","0.98",{"$nulls":10},"Mobile element protein","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",3114916,"C","A","2374.74","81.0","0.96",{"$nulls":10},"Mobile element protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",3118000,"A","G",{"v":555563,"d":"555,563"},"19.0","1.00","Nonsyn","agg","Ggg","1183A>G","Arg395Gly",null,"fig|83332.12.peg.3134","Rv2812",null,"Mobile element protein","hypothetical protein","Type II secretory pathway, component ExeA","missense_variantHIGH"]
["MP1","NC_000962",3118000,"A","G","5801.67","172.0","1.00","Nonsyn","agg","Ggg","1183A>G","Arg395Gly",null,"fig|83332.12.peg.3134","Rv2812",null,"Mobile element protein","hypothetical protein","Type II secretory pathway, component ExeA","missense_variantHIGH"]
[64,"NC_000962",3118449,"A","G","1733.22","55.0","0.95","Nonsyn","atc","Gtc","226A>G","Ile76Val",null,"fig|83332.12.peg.3135","Rv2813",null,"Type II secretory pathway, component ExeA","Mobile element protein","hypothetical protein","missense_variantMODIFIER"]
[7739,"NC_000962",3125116,"G","A","3409.8","118.0","0.99","Synon","ggc","ggT","1128C>T","Gly376Gly",null,"fig|83332.12.peg.3143","Rv2818c",null,"CRISPR-associated protein Csm6","CRISPR-associated protein Cas1","CRISPR-associated protein, Csm5 family","synonymous_variantLOW"]
["G01498","NC_000962",3125235,"G","A","1658.53","57.0","0.92","Nonsyn","caa","Taa","1009C>T","Gln337*",null,"fig|83332.12.peg.3143","Rv2818c",null,"CRISPR-associated protein Csm6","CRISPR-associated protein Cas1","CRISPR-associated protein, Csm5 family","stop_gainedHIGH"]
["G01491","NC_000962",3127466,"T","G","3460.7","110.0","1.00","Synon","cga","cgC","681A>C","Arg227Arg",null,"fig|83332.12.peg.3145","Rv2820c",null,"CRISPR-associated RAMP protein, Csm4 family","CRISPR-associated protein, Csm5 family","CRISPR-associated RAMP Csm3","synonymous_variantLOW"]
[54,"NC_000962",3127466,"T","G","18685.2","578.0","0.98","Synon","cga","cgC","681A>C","Arg227Arg",null,"fig|83332.12.peg.3145","Rv2820c",null,"CRISPR-associated RAMP protein, Csm4 family","CRISPR-associated protein, Csm5 family","CRISPR-associated RAMP Csm3","synonymous_variantLOW"]
["MP2","NC_000962",3127534,"T","C","7727.97","227.0","1.00","Nonsyn","aca","Gca","613A>G","Thr205Ala",null,"fig|83332.12.peg.3145","Rv2820c",null,"CRISPR-associated RAMP protein, Csm4 family","CRISPR-associated protein, Csm5 family","CRISPR-associated RAMP Csm3","missense_variantMODERATE"]
[7739,"NC_000962",3133054,"CG","GC","1244.79","52.0","0.96","Nonsyn","tcg","tGC","560CG>GC","Ser187Cys",null,"fig|83332.12.peg.3150","Rv2825c",null,"Uncharacterized protein MSMEG_2643","CRISPR-associated endoribonuclease Cas6","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",3133054,"CG","GC","4372.2","138.0","0.99","Nonsyn","tcg","tGC","560CG>GC","Ser187Cys",null,"fig|83332.12.peg.3150","Rv2825c",null,"Uncharacterized protein MSMEG_2643","CRISPR-associated endoribonuclease Cas6","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",3133536,"T","C","2755.0","85.0","0.99","Nonsyn","aaa","Gaa","79A>G","Lys27Glu",null,"fig|83332.12.peg.3150","Rv2825c",null,"Uncharacterized protein MSMEG_2643","CRISPR-associated endoribonuclease Cas6","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",3134839,"G","A","2705.54","87.0","1.00","Synon","cgc","cgT","642C>T","Arg214Arg",null,"fig|83332.12.peg.3152","Rv2827c",null,"FIG00820907: hypothetical protein","hypothetical protein","Uncharacterized protein MSMEG_2643","synonymous_variantLOW"]
["G01492","NC_000962",3137058,"G","A","9846.6","320.0","0.99","Nonsyn","gcg","gTg","131C>T","Ala44Val",null,"fig|83332.12.peg.3156","Rv2830c",null,"antitoxin VapB22 @ Antitoxin to Toxin 1, PIN domain","toxin VapC22 @ Toxin 1, PIN domain","Enoyl-CoA hydratase (EC 4.2.1.17)","missense_variantMODERATE"]
["G01222","NC_000962",3137237,"T","C","1071.97","32.0","1.00",{"$nulls":10},"antitoxin VapB22 @ Antitoxin to Toxin 1, PIN domain","Enoyl-CoA hydratase (EC 4.2.1.17)","intergenic_regionMODERATE"]
["MP1","NC_000962",3137237,"T","C","8639.73","249.0","1.00",{"$nulls":10},"antitoxin VapB22 @ Antitoxin to Toxin 1, PIN domain","Enoyl-CoA hydratase (EC 4.2.1.17)","intergenic_regionMODERATE"]
[64,"NC_000962",3142098,"G","A","2288.17","72.0","1.00","Nonsyn","gcc","gTc","80C>T","Ala27Val",null,"fig|83332.12.peg.3161","Rv2835c","ugpA","Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)","Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)","putative DNA-damage-inducible protein F","missense_variantMODERATE"]
["MP2","NC_000962",3142098,"G","A","7629.6","220.0","1.00","Nonsyn","gcc","gTc","80C>T","Ala27Val",null,"fig|83332.12.peg.3161","Rv2835c","ugpA","Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)","Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)","putative DNA-damage-inducible protein F","missense_variantMODERATE"]
[58,"NC_000962",3142539,"C","T","4094.66","123.0","1.00","Nonsyn","gtt","Att","1081G>A","Val361Ile",null,"fig|83332.12.peg.3162","Rv2836c","dinF","putative DNA-damage-inducible protein F","Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)","Cyclic-di-AMP phosphodiesterase MSMEG_2630","missense_variantMODERATE"]
[7011,"NC_000962",3162804,"AC","CG","1572.87","51.0","1.00","Nonsyn","aaacgc","aaCGgc","537AC>CG","LysArg179AsnGly",null,"fig|83332.12.peg.3180","Rv2853","PE_PGRS48","PE_PGRS family protein ","Malate:quinone oxidoreductase (EC 1.1.5.4)","Lysophospholipase (EC 3.1.1.5)","missense_variantMODERATE"]
["G01491","NC_000962",3163558,"A","G","3521.95","116.0","1.00","Nonsyn","aaa","Gaa","1291A>G","Lys431Glu",null,"fig|83332.12.peg.3180","Rv2853","PE_PGRS48","PE_PGRS family protein ","Malate:quinone oxidoreductase (EC 1.1.5.4)","Lysophospholipase (EC 3.1.1.5)","missense_variantLOW"]
["G01491","NC_000962",3167216,"T","C","3476.8","110.0","0.99","Nonsyn","ctg","cCg","533T>C","Leu178Pro",null,"fig|83332.12.peg.3183","Rv2856","nicT","HoxN/HupN/NixA family nickel/cobalt transporter","NADPH-dependent mycothiol reductase Mtr","[NiFe] hydrogenase nickel incorporation-associated protein HypB","missense_variantMODERATE"]
[54,"NC_000962",3167216,"T","C","1146.48","43.0","0.93","Nonsyn","ctg","cCg","533T>C","Leu178Pro",null,"fig|83332.12.peg.3183","Rv2856","nicT","HoxN/HupN/NixA family nickel/cobalt transporter","NADPH-dependent mycothiol reductase Mtr","[NiFe] hydrogenase nickel incorporation-associated protein HypB","missense_variantLOW"]
["MP2","NC_000962",3174496,"A","G","7719.0","231.0","1.00","Nonsyn","tgt","Cgt","181T>C","Cys61Arg",null,"fig|83332.12.peg.3191","Rv2862c",null,"FIG020268: hypothetical protein","Methionine aminopeptidase (EC 3.4.11.18)","toxin VapC23 @ Toxin 1, PIN domain","missense_variantLOW"]
[58,"NC_000962",3177884,"C","A","1508.22","51.0","1.00","Synon","cgc","cgA","51C>A","Arg17Arg",null,"fig|83332.12.peg.3195","Rv2866",null,"mRNA interferase RelE","RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",3177884,"C","A","3679.43","116.0","1.00","Synon","cgc","cgA","51C>A","Arg17Arg",null,"fig|83332.12.peg.3195","Rv2866",null,"mRNA interferase RelE","RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",3180988,"C","A","2217.49","74.0","1.00","Nonsyn","gtc","Ttc","775G>T","Val259Phe",null,"fig|83332.12.peg.3199","Rv2869c",null,"Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage","(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3)","1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)","missense_variantMODERATE"]
["G01498","NC_000962",3184732,"C","A","1402.41","50.0","0.93","Nonsyn","ctg","Atg","70C>A","Leu24Met",null,"fig|83332.12.peg.3204",null,null,"hypothetical protein","Cell surface lipoprotein MPT83 precursor","Possible integral membrane c-type cytochrome biogenesis protein DipZ","missense_variantMODERATE"]
["G01491","NC_000962",3187792,"T","C","3573.53","114.0","0.99","Nonsyn","tgg","Cgg","130T>C","Trp44Arg",null,"fig|83332.12.peg.3207","Rv2876",null,"putative membrane protein","Cell surface lipoprotein MPT83 precursor","Mercury resistance probable Hg transport protein","missense_variantMODERATE"]
[54,"NC_000962",3187792,"T","C","1814.85","58.0","0.97","Nonsyn","tgg","Cgg","130T>C","Trp44Arg",null,"fig|83332.12.peg.3207","Rv2876",null,"putative membrane protein","Cell surface lipoprotein MPT83 precursor","Mercury resistance probable Hg transport protein","missense_variantMODERATE"]
["MP2","NC_000962",3188769,"A","G","6961.79","212.0","1.00","Nonsyn","tat","Cat","103T>C","Tyr35His",null,"fig|83332.12.peg.3208","Rv2877c",null,"Mercury resistance probable Hg transport protein","putative membrane protein","Soluble secreted antigen MPT53 precursor","missense_variantMODERATE"]
["G01491","NC_000962",3189242,"A","G","5033.36","159.0","0.99","Synon","gct","gcC","156T>C","Ala52Ala",null,"fig|83332.12.peg.3209","Rv2878c","mpt53","Soluble secreted antigen MPT53 precursor","Mercury resistance probable Hg transport protein","23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192)","synonymous_variantMODIFIER"]
[7739,"NC_000962",3190145,"TCCCCCCA","TCCCCCA","2543.08","80.0","0.98","Deletion","atgggggga","aTGGGGGA","528delG","Met176fs","yes","fig|83332.12.peg.3211","Rv2880c",null,"23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192)","23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192)","Phosphatidate cytidylyltransferase (EC 2.7.7.41)","frameshift_variantHIGH"]
[58,"NC_000962",3190145,"TCCCCCCA","TCCCCCA",{"v":696352,"d":"696,352"},"25.0","0.96","Deletion","atgggggga","aTGGGGGA","528delG","Met176fs","yes","fig|83332.12.peg.3211","Rv2880c",null,"23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192)","23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192)","Phosphatidate cytidylyltransferase (EC 2.7.7.41)","frameshift_variantMODERATE"]
[7011,"NC_000962",3195731,"T","C","3057.32","105.0","1.00","Synon","gta","gtG","402A>G","Val134Val",null,"fig|83332.12.peg.3218","Rv2886c",null,"Resolvase","Mobile element protein","Transcriptional regulator, MarR family","synonymous_variantLOW"]
["G01492","NC_000962",3200304,"A","G","8568.47","275.0","1.00",{"$nulls":10},"hypothetical protein","PPE family protein, SVP subgroup ","intergenic_regionMODERATE"]
["G01222","NC_000962",3204224,"G","A","1124.32","36.0","1.00","Nonsyn","cgt","Tgt","67C>T","Arg23Cys",null,"fig|83332.12.peg.3228","Rv2894c","xerC","Site-specific tyrosine recombinase XerC","Putative oxidoreductase","Iron utilization protein","missense_variantMODERATE"]
["MP1","NC_000962",3204224,"G","A","4653.93","143.0","0.98","Nonsyn","cgt","Tgt","67C>T","Arg23Cys",null,"fig|83332.12.peg.3228","Rv2894c","xerC","Site-specific tyrosine recombinase XerC","Putative oxidoreductase","Iron utilization protein","missense_variantMODERATE"]
[64,"NC_000962",3205978,"A","C",{"v":444124,"d":"444,124"},"15.0","1.00","Nonsyn","tcg","Gcg","457T>G","Ser153Ala",null,"fig|83332.12.peg.3230","Rv2896c",null,"Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake","Iron utilization protein","AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination","missense_variantMODERATE"]
[7739,"NC_000962",3214398,"T","C","2504.24","77.0","1.00",{"$nulls":10},"LSU ribosomal protein L19p","Putative lipoprotein lppW precursor","intergenic_regionMODIFIER"]
["G01498","NC_000962",3215881,"A","C",{"v":937774,"d":"937,774"},"43.0","0.75","Synon","gtt","gtG","477T>G","Val159Val",null,"fig|83332.12.peg.3240","Rv2906c","trmD","tRNA (guanine(37)-N(1))-methyltransferase (EC 2.1.1.228)","Putative lipoprotein lppW precursor","16S rRNA processing protein RimM","synonymous_variantLOW"]
[7011,"NC_000962",3215881,"A","C","2318.9","76.0","1.00","Synon","gtt","gtG","477T>G","Val159Val",null,"fig|83332.12.peg.3240","Rv2906c","trmD","tRNA (guanine(37)-N(1))-methyltransferase (EC 2.1.1.228)","Putative lipoprotein lppW precursor","16S rRNA processing protein RimM","synonymous_variantLOW"]
[58,"NC_000962",3217451,"G","C",{"v":425909,"d":"425,909"},"15.0","1.00","Nonsyn","cag","Gag","193C>G","Gln65Glu",null,"fig|83332.12.peg.3243","Rv2909c","rpsP","SSU ribosomal protein S16p","KH domain RNA binding protein YlqC","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",3219973,"G","A","4213.67","133.0","0.98","Nonsyn","cgc","Tgc","1726C>T","Arg576Cys",null,"fig|83332.12.peg.3247","Rv2913c",null,"N-acyl-D-glutamate amidohydrolase","Transcriptional regulator, AcrR family","Probable serine/threonine-protein kinase pknF (EC 2.7.11.1)","missense_variantMODERATE"]
[54,"NC_000962",3219973,"G","A","1744.33","59.0","1.00","Nonsyn","cgc","Tgc","1726C>T","Arg576Cys",null,"fig|83332.12.peg.3247","Rv2913c",null,"N-acyl-D-glutamate amidohydrolase","Transcriptional regulator, AcrR family","Probable serine/threonine-protein kinase pknF (EC 2.7.11.1)","missense_variantMODERATE"]
["MP2","NC_000962",3220433,"G","T","6791.11","194.0","1.00","Nonsyn","ttc","ttA","1266C>A","Phe422Leu",null,"fig|83332.12.peg.3247","Rv2913c",null,"N-acyl-D-glutamate amidohydrolase","Transcriptional regulator, AcrR family","Probable serine/threonine-protein kinase pknF (EC 2.7.11.1)","missense_variantMODERATE"]
[58,"NC_000962",3226181,"A","C","6768.21","206.0","0.97","Synon","cgt","cgG","105T>G","Arg35Arg",null,"fig|83332.12.peg.3250","Rv2916c","ffh","Signal recognition particle protein Ffh","Xaa-Pro dipeptidase (EC 3.4.13.9)","DNA or RNA helicase of superfamily protein II","synonymous_variantLOW"]
[7011,"NC_000962",3228143,"G","T","1598.5","73.0","0.99","Nonsyn","cgg","cTg","1622G>T","Arg541Leu",null,"fig|83332.12.peg.3251","Rv2917",null,"DNA or RNA helicase of superfamily protein II","Signal recognition particle protein Ffh","[Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme","missense_variantLOW"]
["G01492","NC_000962",3243695,"C","A","10857.0","348.0","0.98",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",3243695,"C","A","2220.89","75.0","0.94",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",3244414,"A","G","4617.45","146.0","0.99","Nonsyn","atg","Gtg","127A>G","Met43Val",null,"fig|83332.12.peg.3266","Rv2930","fadD26","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD26","hypothetical protein","Phenolpthiocerol synthesis type-I polyketide synthase PpsA (EC 2.3.1.41)","missense_variantMODERATE"]
[54,"NC_000962",3244414,"A","G","1071.54","38.0","0.95","Nonsyn","atg","Gtg","127A>G","Met43Val",null,"fig|83332.12.peg.3266","Rv2930","fadD26","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD26","hypothetical protein","Phenolpthiocerol synthesis type-I polyketide synthase PpsA (EC 2.3.1.41)","missense_variantMODERATE"]
["MP2","NC_000962",3247579,"G","A","5452.85","163.0","0.99","Nonsyn","cgg","cAg","2135G>A","Arg712Gln",null,"fig|83332.12.peg.3267","Rv2931","ppsA","Phenolpthiocerol synthesis type-I polyketide synthase PpsA (EC 2.3.1.41)","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD26","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","missense_variantLOW"]
["G01492","NC_000962",3247883,"T","C","8348.14","261.0","1.00","Synon","agt","agC","2439T>C","Ser813Ser",null,"fig|83332.12.peg.3267","Rv2931","ppsA","Phenolpthiocerol synthesis type-I polyketide synthase PpsA (EC 2.3.1.41)","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD26","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","synonymous_variantMODERATE"]
[7739,"NC_000962",3254365,"T","C","3269.49","105.0","1.00","Synon","ctt","ctC","3294T>C","Leu1098Leu",null,"fig|83332.12.peg.3268","Rv2932","ppsB","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","Phenolpthiocerol synthesis type-I polyketide synthase PpsA (EC 2.3.1.41)","Phenolpthiocerol synthesis type-I polyketide synthase PpsC","synonymous_variantLOW"]
["G01498","NC_000962",3254880,"G","T","1873.69","60.0","1.00","Nonsyn","cgg","cTg","3809G>T","Arg1270Leu",null,"fig|83332.12.peg.3268","Rv2932","ppsB","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","Phenolpthiocerol synthesis type-I polyketide synthase PpsA (EC 2.3.1.41)","Phenolpthiocerol synthesis type-I polyketide synthase PpsC","missense_variantMODERATE"]
["G01491","NC_000962",3256494,"A","G","4929.23","157.0","1.00","Synon","gga","ggG","810A>G","Gly270Gly",null,"fig|83332.12.peg.3269","Rv2933","ppsC","Phenolpthiocerol synthesis type-I polyketide synthase PpsC","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","Phenolpthiocerol synthesis type-I polyketide synthase PpsD","synonymous_variantLOW"]
["G01492","NC_000962",3256494,"A","G","10160.8","325.0","1.00","Synon","gga","ggG","810A>G","Gly270Gly",null,"fig|83332.12.peg.3269","Rv2933","ppsC","Phenolpthiocerol synthesis type-I polyketide synthase PpsC","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","Phenolpthiocerol synthesis type-I polyketide synthase PpsD","synonymous_variantLOW"]
["G01222","NC_000962",3258833,"C","T",{"v":482562,"d":"482,562"},"16.0","1.00","Nonsyn","gca","gTa","3149C>T","Ala1050Val",null,"fig|83332.12.peg.3269","Rv2933","ppsC","Phenolpthiocerol synthesis type-I polyketide synthase PpsC","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","Phenolpthiocerol synthesis type-I polyketide synthase PpsD","missense_variantMODERATE"]
["MP1","NC_000962",3258833,"C","T","6542.64","191.0","0.99","Nonsyn","gca","gTa","3149C>T","Ala1050Val",null,"fig|83332.12.peg.3269","Rv2933","ppsC","Phenolpthiocerol synthesis type-I polyketide synthase PpsC","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","Phenolpthiocerol synthesis type-I polyketide synthase PpsD","missense_variantLOW"]
[64,"NC_000962",3269581,"A","G","2520.13","83.0","0.95","Synon","gca","gcG","1845A>G","Ala615Ala",null,"fig|83332.12.peg.3271","Rv2935","ppsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsD","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, ATP-binding protein DrrA-like","synonymous_variantLOW"]
[7739,"NC_000962",3270784,"A","G","2307.32","79.0","1.00","Synon","caa","caG","3048A>G","Gln1016Gln",null,"fig|83332.12.peg.3271","Rv2935","ppsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsD","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, ATP-binding protein DrrA-like","synonymous_variantLOW"]
["G01498","NC_000962",3271037,"A","G","2829.8","93.0","1.00","Nonsyn","aac","Gac","3301A>G","Asn1101Asp",null,"fig|83332.12.peg.3271","Rv2935","ppsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsD","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, ATP-binding protein DrrA-like","missense_variantLOW"]
["G01491","NC_000962",3272117,"G","A","4140.06","137.0","0.95","Nonsyn","gag","Aag","4381G>A","Glu1461Lys",null,"fig|83332.12.peg.3271","Rv2935","ppsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsD","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, ATP-binding protein DrrA-like","missense_variantMODERATE"]
[64,"NC_000962",3272117,"G","A","2962.17","94.0","0.97","Nonsyn","gag","Aag","4381G>A","Glu1461Lys",null,"fig|83332.12.peg.3271","Rv2935","ppsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsE","Phenolpthiocerol synthesis type-I polyketide synthase PpsD","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, ATP-binding protein DrrA-like","missense_variantMODERATE"]
["G01491","NC_000962",3273138,"C","G","3922.98","123.0","1.00","Nonsyn","cac","Gac","925C>G","His309Asp",null,"fig|83332.12.peg.3272","Rv2936","drrA","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, ATP-binding protein DrrA-like","Phenolpthiocerol synthesis type-I polyketide synthase PpsE","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, integral membrane protein DrrB-like","missense_variantMODERATE"]
[54,"NC_000962",3273138,"C","G","3059.04","103.0","0.87","Nonsyn","cac","Gac","925C>G","His309Asp",null,"fig|83332.12.peg.3272","Rv2936","drrA","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, ATP-binding protein DrrA-like","Phenolpthiocerol synthesis type-I polyketide synthase PpsE","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, integral membrane protein DrrB-like","missense_variantMODERATE"]
["MP2","NC_000962",3274543,"C","T","8977.99","262.0","1.00","Synon","ctg","Ttg","379C>T","Leu127Leu",null,"fig|83332.12.peg.3274","Rv2938","drrC","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, integral membrane protein DrrC-like","ATP-dependent efflux pump essential for phthiocerol dimycocerosates translocation, integral membrane protein DrrB-like","Phthiocerol/phthiodiolone dimycocerosyl transferase PapA5 (EC 2.3.1.-)","synonymous_variantMODERATE"]
[58,"NC_000962",3283592,"G","C",{"v":465801,"d":"465,801"},"16.0","1.00","Synon","ggg","ggC","183G>C","Gly61Gly",null,"fig|83332.12.peg.3277","Rv2941","fadD28","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD28","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas in phthiocerol dimycocerosate cluster","Transmembrane transport protein MmpL7","synonymous_variantLOW"]
[7011,"NC_000962",3286107,"C","A","2663.92","87.0","1.00","Synon","gtc","gtA","993C>A","Val331Val",null,"fig|83332.12.peg.3278","Rv2942","mmpL7","Transmembrane transport protein MmpL7","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD28","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",3296721,"C","G","7636.68","241.0","0.98","Nonsyn","ggt","Cgt","976G>C","Gly326Arg",null,"fig|83332.12.peg.3286","Rv2947c","pks15","Modular polyketide synthase","Modular polyketide synthase","Modular polyketide synthase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD22","missense_variantMODERATE"]
["G01222","NC_000962",3296843,"A","G",{"v":272737,"d":"272,737"},"11.0","0.92","Nonsyn","gtg","gCg","854T>C","Val285Ala",null,"fig|83332.12.peg.3286","Rv2947c","pks15","Modular polyketide synthase","Modular polyketide synthase","Modular polyketide synthase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD22","missense_variantMODERATE"]
["MP1","NC_000962",3296843,"A","G","6387.96","190.0","1.00","Nonsyn","gtg","gCg","854T>C","Val285Ala",null,"fig|83332.12.peg.3286","Rv2947c","pks15","Modular polyketide synthase","Modular polyketide synthase","Modular polyketide synthase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD22","missense_variantMODERATE"]
[54,"NC_000962",3296843,"A","G",{"v":398229,"d":"398,229"},"19.0","1.00","Nonsyn","gtg","gCg","854T>C","Val285Ala",null,"fig|83332.12.peg.3286","Rv2947c","pks15","Modular polyketide synthase","Modular polyketide synthase","Modular polyketide synthase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD22","missense_variantMODERATE"]
["MP2","NC_000962",3302683,"C","T","8455.47","248.0","1.00",{"$nulls":10},"Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD29","Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase","intergenic_regionMODERATE"]
["G01491","NC_000962",3311119,"G","C","4641.84","146.0","0.99","Synon","gtc","gtG","882C>G","Val294Val",null,"fig|83332.12.peg.3300","Rv2958c",null,"UDP-glucoronosyl and UDP-glucosyltransferases family protein","hypothetical protein","SAM-dependent methyltransferase","synonymous_variantLOW"]
[7739,"NC_000962",3311119,"G","C","2379.98","76.0","0.99","Synon","gtc","gtG","882C>G","Val294Val",null,"fig|83332.12.peg.3300","Rv2958c",null,"UDP-glucoronosyl and UDP-glucosyltransferases family protein","hypothetical protein","SAM-dependent methyltransferase","synonymous_variantLOW"]
["G01498","NC_000962",3311132,"GCC","GCCC","1588.93","50.0","0.94","Insertion","ctggcc","ctGGGCc","866_867insG","Leu289_Ala290fs","yes","fig|83332.12.peg.3300","Rv2958c",null,"UDP-glucoronosyl and UDP-glucosyltransferases family protein","hypothetical protein","SAM-dependent methyltransferase","frameshift_variantHIGH"]
["G01491","NC_000962",3312169,"G","C","4026.99","128.0","0.96","Nonsyn","cat","Gat","502C>G","His168Asp",null,"fig|83332.12.peg.3301","Rv2959c",null,"SAM-dependent methyltransferase","UDP-glucoronosyl and UDP-glucosyltransferases family protein","hypothetical protein","missense_variantMODIFIER"]
[54,"NC_000962",3312169,"G","C","32490.8","959.0","1.00","Nonsyn","cat","Gat","502C>G","His168Asp",null,"fig|83332.12.peg.3301","Rv2959c",null,"SAM-dependent methyltransferase","UDP-glucoronosyl and UDP-glucosyltransferases family protein","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",3314412,"A","G","7171.81","209.0","0.99","Synon","gct","gcC","558T>C","Ala186Ala",null,"fig|83332.12.peg.3304","Rv2962c",null,"UDP-glucoronosyl and UDP-glucosyltransferases family protein","Transposase","Uncharacterized membrane protein, YraQ family","synonymous_variantLOW"]
["MP1","NC_000962",3314412,"A","G","7566.0","224.0","1.00","Synon","gct","gcC","558T>C","Ala186Ala",null,"fig|83332.12.peg.3304","Rv2962c",null,"UDP-glucoronosyl and UDP-glucosyltransferases family protein","Transposase","Uncharacterized membrane protein, YraQ family","synonymous_variantLOW"]
[64,"NC_000962",3326554,"A","C","1459.61","48.0","0.92","Nonsyn","aac","Cac","454A>C","Asn152His",null,"fig|83332.12.peg.3315","Rv2971",null,"2,5-diketo-D-gluconic acid reductase (EC 1.1.1.-)","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
[7739,"NC_000962",3335708,"G","C","2760.93","89.0","1.00","Nonsyn","ccg","cGg","41C>G","Pro14Arg",null,"fig|83332.12.peg.3324","Rv2979c",null,"Resolvase","Mobile element protein","putative membrane protein","missense_variantMODERATE"]
["G01498","NC_000962",3336825,"T","C","5351.55","174.0","0.99","Nonsyn","aca","Gca","1093A>G","Thr365Ala",null,"fig|83332.12.peg.3328","Rv2981c","ddl","D-alanine--D-alanine ligase (EC 6.3.2.4)","hypothetical protein","Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)","missense_variantMODERATE"]
["G01491","NC_000962",3337219,"G","A","6218.11","201.0","0.99","Synon","atc","atT","699C>T","Ile233Ile",null,"fig|83332.12.peg.3328","Rv2981c","ddl","D-alanine--D-alanine ligase (EC 6.3.2.4)","hypothetical protein","Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)","synonymous_variantLOW"]
["G01491","NC_000962",3338603,"G","C","5479.61","174.0","0.99","Nonsyn","ccg","Gcg","403C>G","Pro135Ala",null,"fig|83332.12.peg.3329","Rv2982c","gpsA","Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)","D-alanine--D-alanine ligase (EC 6.3.2.4)","2-phospho-L-lactate guanylyltransferase (EC 2.7.7.68)","missense_variantMODERATE"]
["MP1","NC_000962",3338603,"G","C","6278.04","188.0","1.00","Nonsyn","ccg","Gcg","403C>G","Pro135Ala",null,"fig|83332.12.peg.3329","Rv2982c","gpsA","Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)","D-alanine--D-alanine ligase (EC 6.3.2.4)","2-phospho-L-lactate guanylyltransferase (EC 2.7.7.68)","missense_variantMODERATE"]
[64,"NC_000962",3345047,"G","T","2364.85","74.0","0.99","Nonsyn","gac","gaA","1029C>A","Asp343Glu",null,"fig|83332.12.peg.3335","Rv2988c","leuC","3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)","3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)","Transcriptional regulator, IclR family","missense_variantMODERATE"]
["MP2","NC_000962",3345047,"G","T","6026.1","174.0","1.00","Nonsyn","gac","gaA","1029C>A","Asp343Glu",null,"fig|83332.12.peg.3335","Rv2988c","leuC","3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)","3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)","Transcriptional regulator, IclR family","missense_variantLOW"]
[58,"NC_000962",3348258,"G","A",{"v":655828,"d":"655,828"},"25.0","0.89","Nonsyn","gcc","Acc","277G>A","Ala93Thr",null,"fig|83332.12.peg.3338","Rv2991",null,"hypothetical protein","Putative uncharacterized protein BCG_3011c","tRNA-Glu-CTC","missense_variantMODERATE"]
[7011,"NC_000962",3352919,"A","G","3726.04","116.0","0.97","Nonsyn","ttc","Ctc","568T>C","Phe190Leu",null,"fig|83332.12.peg.3342","Rv2995c","leuB","3-isopropylmalate dehydrogenase (EC 1.1.1.85)","MFS-type transporter Rv2994 family ","D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)","missense_variantMODERATE"]
["G01492","NC_000962",3352932,"C","G","11476.7","368.0","0.99","Synon","acg","acC","555G>C","Thr185Thr",null,"fig|83332.12.peg.3342","Rv2995c","leuB","3-isopropylmalate dehydrogenase (EC 1.1.1.85)","MFS-type transporter Rv2994 family ","D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)","synonymous_variantMODERATE"]
["G01222","NC_000962",3356517,"T","C",{"v":984731,"d":"984,731"},"32.0","1.00","Synon","cct","ccC","1419T>C","Pro473Pro",null,"fig|83332.12.peg.3344","Rv2997",null,"Phytoene dehydrogenase and related proteins","D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)","hypothetical protein","synonymous_variantMODERATE"]
["MP1","NC_000962",3356517,"T","C","7355.94","218.0","1.00","Synon","cct","ccC","1419T>C","Pro473Pro",null,"fig|83332.12.peg.3344","Rv2997",null,"Phytoene dehydrogenase and related proteins","D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",3358235,"A","T","2072.09","66.0","0.97","Nonsyn","atg","Ttg","634A>T","Met212Leu",null,"fig|83332.12.peg.3348","Rv2999","lppY","protein of unknown function LppY and LpqO","hypothetical protein","Probable iron export permease protein FetB","missense_variantLOW"]
[7739,"NC_000962",3363338,"A","G","2668.26","83.0","0.99","Synon","aaa","aaG","30A>G","Lys10Lys",null,"fig|83332.12.peg.3353","Rv3004","cfp6","Low molecular weight protein antigen 6","Acetolactate synthase large subunit (EC 2.2.1.6)","Membrane protein 2, distant similarity to thiosulphate:quinone oxidoreductase DoxD","synonymous_variantLOW"]
["MP2","NC_000962",3363338,"A","G","7175.28","206.0","1.00","Synon","aaa","aaG","30A>G","Lys10Lys",null,"fig|83332.12.peg.3353","Rv3004","cfp6","Low molecular weight protein antigen 6","Acetolactate synthase large subunit (EC 2.2.1.6)","Membrane protein 2, distant similarity to thiosulphate:quinone oxidoreductase DoxD","synonymous_variantLOW"]
[7739,"NC_000962",3367765,"G","A","2706.17","95.0","0.99","Synon","ggc","ggT","1029C>T","Gly343Gly",null,"fig|83332.12.peg.3358","Rv3009c","gatB","Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)","hypothetical protein","6-phosphofructokinase (EC 2.7.1.11)","synonymous_variantLOW"]
["G01498","NC_000962",3367960,"G","T","2062.9","71.0","0.93","Synon","acc","acA","834C>A","Thr278Thr",null,"fig|83332.12.peg.3358","Rv3009c","gatB","Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)","hypothetical protein","6-phosphofructokinase (EC 2.7.1.11)","synonymous_variantLOW"]
["G01491","NC_000962",3369869,"G","T","4909.59","159.0","1.00",{"$nulls":10},"6-phosphofructokinase (EC 2.7.1.11)","Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)","intergenic_regionMODIFIER"]
[54,"NC_000962",3369869,"G","T","6319.24","213.0","1.00",{"$nulls":10},"6-phosphofructokinase (EC 2.7.1.11)","Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)","intergenic_regionMODIFIER"]
["MP2","NC_000962",3370177,"T","G","6003.07","176.0","1.00","Nonsyn","atg","Ctg","1258A>C","Met420Leu",null,"fig|83332.12.peg.3360","Rv3011c","gatA","Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)","6-phosphofructokinase (EC 2.7.1.11)","Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)","missense_variantMODERATE"]
[58,"NC_000962",3371260,"T","C","310.85","12.0","1.00","Nonsyn","atc","Gtc","175A>G","Ile59Val",null,"fig|83332.12.peg.3360","Rv3011c","gatA","Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)","6-phosphofructokinase (EC 2.7.1.11)","Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)","missense_variantLOW"]
[7011,"NC_000962",3376061,"G","A","3827.99","115.0","1.00","Nonsyn","gaa","Aaa","304G>A","Glu102Lys",null,"fig|83332.12.peg.3365","Rv3016","lpqA","Lipoprotein LpqA","Methionine synthase, vitamin-B12 independent, putative","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",3376061,"G","A","3394.16","103.0","0.99","Nonsyn","gaa","Aaa","304G>A","Glu102Lys",null,"fig|83332.12.peg.3365","Rv3016","lpqA","Lipoprotein LpqA","Methionine synthase, vitamin-B12 independent, putative","hypothetical protein","missense_variantLOW"]
["G01498","NC_000962",3380961,"C","G","2092.03","69.0","0.96","Synon","gcg","gcC","36G>C","Ala12Ala",null,"fig|83332.12.peg.3373","Rv3022A","PE29","PE family protein ","PPE family protein ","Mobile element protein","synonymous_variantLOW"]
["G01491","NC_000962",3384939,"C","A","4933.61","163.0","0.99","Nonsyn","cgg","cTg","128G>T","Arg43Leu",null,"fig|83332.12.peg.3376","Rv3025c","iscS","Cysteine desulfurase (EC 2.8.1.7)","tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13)","Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)","missense_variantLOW"]
["G01492","NC_000962",3392544,"G","A","11820.6","397.0","0.98","Synon","ggg","ggA","999G>A","Gly333Gly",null,"fig|83332.12.peg.3383","Rv3032",null,"Glycogen synthase (EC 2.4.1.11)","Glycogen branching enzyme, GH-57-type, archaeal (EC 2.4.1.18)","Uncharacterized protein Rv3032.5","synonymous_variantLOW"]
["MP1","NC_000962",3392544,"G","A","4051.46","128.0","0.99","Synon","ggg","ggA","999G>A","Gly333Gly",null,"fig|83332.12.peg.3383","Rv3032",null,"Glycogen synthase (EC 2.4.1.11)","Glycogen branching enzyme, GH-57-type, archaeal (EC 2.4.1.18)","Uncharacterized protein Rv3032.5","synonymous_variantMODERATE"]
[64,"NC_000962",3401871,"A","G","1414.37","49.0","0.92","Synon","gct","gcC","30T>C","Ala10Ala",null,"fig|83332.12.peg.3393","Rv3041c",null,"ABC transporter, ATP-binding protein","NUDIX hydrolase-like protein SCO3573","Phosphoserine phosphatase (EC 3.1.3.3)","synonymous_variantLOW"]
[7739,"NC_000962",3402816,"C","T","3128.91","99.0","1.00","Nonsyn","gga","gAa","347G>A","Gly116Glu",null,"fig|83332.12.peg.3394","Rv3042c","serB2","Phosphoserine phosphatase (EC 3.1.3.3)","ABC transporter, ATP-binding protein","Cytochrome c oxidase polypeptide I (EC 1.9.3.1)","missense_variantMODERATE"]
["G01498","NC_000962",3404376,"C","G","1253.16","46.0","0.94","Synon","acg","acC","432G>C","Thr144Thr",null,"fig|83332.12.peg.3395","Rv3043c","ctaD","Cytochrome c oxidase polypeptide I (EC 1.9.3.1)","Phosphoserine phosphatase (EC 3.1.3.3)","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",3404376,"C","G","3602.53","108.0","1.00","Synon","acg","acC","432G>C","Thr144Thr",null,"fig|83332.12.peg.3395","Rv3043c","ctaD","Cytochrome c oxidase polypeptide I (EC 1.9.3.1)","Phosphoserine phosphatase (EC 3.1.3.3)","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",3408944,"C","T","9870.17","314.0","0.99","Synon","cag","caA","435G>A","Gln145Gln",null,"fig|83332.12.peg.3402","Rv3048c","nrdF2","Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)","hypothetical protein","Cyclohexanone monooxygenase (EC 1.14.13.22)","synonymous_variantLOW"]
["G01222","NC_000962",3413842,"C","A",{"v":855827,"d":"855,827"},"32.0","1.00","Nonsyn","gtg","Ttg","325G>T","Val109Leu",null,"fig|83332.12.peg.3405","Rv3051c","nrdE","Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Ribonucleotide reduction protein NrdI","missense_variantMODIFIER"]
["MP1","NC_000962",3413842,"C","A","6720.37","203.0","1.00","Nonsyn","gtg","Ttg","325G>T","Val109Leu",null,"fig|83332.12.peg.3405","Rv3051c","nrdE","Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)","Transcriptional regulator, AcrR family","Ribonucleotide reduction protein NrdI","missense_variantMODIFIER"]
[64,"NC_000962",3415332,"A","G","2059.61","64.0","1.00",{"$nulls":10},"Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib","NADPH:quinone oxidoreductase","intergenic_regionMODIFIER"]
[7739,"NC_000962",3420442,"C","T","2163.69","71.0","0.99","Synon","tac","taT","951C>T","Tyr317Tyr",null,"fig|83332.12.peg.3413","Rv3059","cyMP136","Cytochrome P450 136","Transcriptional regulator, AcrR family","Transcriptional regulator, GntR family","synonymous_variantLOW"]
["MP1","NC_000962",3420442,"C","T","7730.25","229.0","1.00","Synon","tac","taT","951C>T","Tyr317Tyr",null,"fig|83332.12.peg.3413","Rv3059","cyMP136","Cytochrome P450 136","Transcriptional regulator, AcrR family","Transcriptional regulator, GntR family","synonymous_variantLOW"]
["G01492","NC_000962",3425854,"C","T","12370.3","414.0","0.99","Nonsyn","ccg","Tcg","241C>T","Pro81Ser",null,"fig|83332.12.peg.3416","Rv3062","ligB","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE22","Carbon starvation protein A","missense_variantMODERATE"]
["G01498","NC_000962",3425854,"C","T","2555.19","89.0","0.98","Nonsyn","ccg","Tcg","241C>T","Pro81Ser",null,"fig|83332.12.peg.3416","Rv3062","ligB","ATP-dependent DNA ligase (EC 6.5.1.1)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE22","Carbon starvation protein A","missense_variantMODERATE"]
["G01491","NC_000962",3428917,"C","A","4292.7","137.0","1.00","Nonsyn","cgt","Agt","1675C>A","Arg559Ser",null,"fig|83332.12.peg.3417","Rv3063","cstA","Carbon starvation protein A","ATP-dependent DNA ligase (EC 6.5.1.1)","putative membrane protein","missense_variantMODERATE"]
[54,"NC_000962",3428917,"C","A","1347.49","42.0","1.00","Nonsyn","cgt","Agt","1675C>A","Arg559Ser",null,"fig|83332.12.peg.3417","Rv3063","cstA","Carbon starvation protein A","ATP-dependent DNA ligase (EC 6.5.1.1)","putative membrane protein","missense_variantMODERATE"]
["MP2","NC_000962",3429605,"G","A","7746.53","231.0","1.00",{"$nulls":10},"Carbon starvation protein A","putative membrane protein","intergenic_regionMODIFIER"]
[58,"NC_000962",3431499,"G","T",{"v":347626,"d":"347,626"},"11.0","1.00","Synon","ccg","ccT","207G>T","Pro69Pro",null,"fig|83332.12.peg.3421","Rv3067",null,"hypothetical protein","Transcriptional regulator, AcrR family","tRNA-Ala-GGC","synonymous_variantLOW"]
[7011,"NC_000962",3440542,"A","G","2704.64","84.0","0.99","Synon","gga","ggG","1002A>G","Gly334Gly",null,"fig|83332.12.peg.3433","Rv3077",null,"Arylsulfatase (EC 3.1.6.1)","hypothetical protein","Hydroxylaminobenzene mutase hab","synonymous_variantLOW"]
["G01492","NC_000962",3444583,"C","T","12827.4","418.0","0.97","Nonsyn","agc","aAc","1406G>A","Ser469Asn",null,"fig|83332.12.peg.3436","Rv3080c","pknK","Serine/Threonine protein kinases / transcriptional regulator, MalT family","Probable F420-dependent oxidoreductase family protein","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",3450725,"T","C",{"v":784649,"d":"784,649"},"28.0","1.00","Synon","gtt","gtC","729T>C","Val243Val",null,"fig|83332.12.peg.3440","Rv3084","lipR","Esterase/lipase","Monooxygenase, flavin-binding family","Oxidoreductase, short-chain dehydrogenase/reductase family","synonymous_variantLOW"]
["G01491","NC_000962",3450725,"T","C","6770.66","214.0","1.00","Synon","gtt","gtC","729T>C","Val243Val",null,"fig|83332.12.peg.3440","Rv3084","lipR","Esterase/lipase","Monooxygenase, flavin-binding family","Oxidoreductase, short-chain dehydrogenase/reductase family","synonymous_variantLOW"]
["G01498","NC_000962",3454263,"C","G","2807.96","95.0","1.00","Nonsyn","ctc","Gtc","1339C>G","Leu447Val",null,"fig|83332.12.peg.3443","Rv3087",null,"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","Alcohol dehydrogenase (EC 1.1.1.1)","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","missense_variantMODERATE"]
["MP1","NC_000962",3454263,"C","G","7795.94","231.0","1.00","Nonsyn","ctc","Gtc","1339C>G","Leu447Val",null,"fig|83332.12.peg.3443","Rv3087",null,"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","Alcohol dehydrogenase (EC 1.1.1.1)","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","missense_variantMODERATE"]
[64,"NC_000962",3455686,"G","C","3947.79","118.0","0.98","Synon","ctg","ctC","1347G>C","Leu449Leu",null,"fig|83332.12.peg.3444","Rv3088",null,"Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","Diacyglycerol O-acyltransferase (EC 2.3.1.20)","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD13","synonymous_variantLOW"]
[7739,"NC_000962",3456666,"A","G","2785.74","89.0","1.00","Synon","gca","gcG","888A>G","Ala296Ala",null,"fig|83332.12.peg.3445","Rv3089","fadD13","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD13","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",3457514,"G","C","2878.47","96.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODERATE"]
["G01491","NC_000962",3463689,"G","A","4554.96","145.0","1.00","Nonsyn","gcc","gTc","203C>T","Ala68Val",null,"fig|83332.12.peg.3451","Rv3094c",null,"Acyl-CoA dehydrogenase/oxidase domain protein","Probable F420-dependent oxidoreductase family protein","Transcriptional regulator, HxlR family","missense_variantMODERATE"]
[54,"NC_000962",3463689,"G","A",{"v":223833,"d":"223,833"},"8.0","1.00","Nonsyn","gcc","gTc","203C>T","Ala68Val",null,"fig|83332.12.peg.3451","Rv3094c",null,"Acyl-CoA dehydrogenase/oxidase domain protein","Probable F420-dependent oxidoreductase family protein","Transcriptional regulator, HxlR family","missense_variantMODERATE"]
["G01222","NC_000962",3464629,"A","G",{"v":874547,"d":"874,547"},"28.0","1.00","Nonsyn","gaa","gGa","32A>G","Glu11Gly",null,"fig|83332.12.peg.3453","Rv3096",null,"putative cellulase family","Transcriptional regulator, HxlR family","PE_PGRS family protein ","missense_variantMODERATE"]
["MP1","NC_000962",3464629,"A","G","6152.75","179.0","1.00","Nonsyn","gaa","gGa","32A>G","Glu11Gly",null,"fig|83332.12.peg.3453","Rv3096",null,"putative cellulase family","Transcriptional regulator, HxlR family","PE_PGRS family protein ","missense_variantMODERATE"]
[64,"NC_000962",3466919,"C","G","4090.25","127.0","0.98","Nonsyn","ggc","gCc","173G>C","Gly58Ala",null,"fig|83332.12.peg.3454","Rv3097c","lipY","PE_PGRS family protein ","putative cellulase family","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",3467465,"C","G","2978.13","96.0","0.99","Nonsyn","aac","aaG","54C>G","Asn18Lys",null,"fig|83332.12.peg.3455",null,null,"hypothetical protein","PE_PGRS family protein ","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",3469951,"C","T","1773.31","64.0","0.90","Synon","cgg","cgA","729G>A","Arg243Arg",null,"fig|83332.12.peg.3459","Rv3101c","ftsX","Cell-division-associated, ABC-transporter-like signaling protein FtsX","tmRNA-binding protein SmpB","Cell-division-associated, ABC-transporter-like signaling protein FtsE","synonymous_variantLOW"]
["G01492","NC_000962",3473996,"GAG","GAAG","7003.8","229.0","0.93","Insertion",{"$nulls":9},"Peptide chain release factor 2","Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type (EC 1.18.1.2)","intergenic_regionMODIFIER"]
["G01222","NC_000962",3474123,"G","A",{"v":597151,"d":"597,151"},"19.0","1.00","Synon","ctg","ctA","117G>A","Leu39Leu",null,"fig|83332.12.peg.3464","Rv3106","fprA","Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type (EC 1.18.1.2)","Peptide chain release factor 2","Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","synonymous_variantLOW"]
["MP1","NC_000962",3474123,"G","A","6308.35","190.0","0.99","Synon","ctg","ctA","117G>A","Leu39Leu",null,"fig|83332.12.peg.3464","Rv3106","fprA","Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type (EC 1.18.1.2)","Peptide chain release factor 2","Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","synonymous_variantLOW"]
[54,"NC_000962",3474123,"G","A","2299.75","74.0","0.99","Synon","ctg","ctA","117G>A","Leu39Leu",null,"fig|83332.12.peg.3464","Rv3106","fprA","Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type (EC 1.18.1.2)","Peptide chain release factor 2","Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","synonymous_variantLOW"]
["MP2","NC_000962",3475159,"A","G","8246.96","235.0","1.00","Nonsyn","aat","Gat","1153A>G","Asn385Asp",null,"fig|83332.12.peg.3464","Rv3106","fprA","Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type (EC 1.18.1.2)","Peptide chain release factor 2","Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","missense_variantMODERATE"]
[58,"NC_000962",3479798,"G","A","5980.39","176.0","1.00","Synon","ggg","ggA","99G>A","Gly33Gly",null,"fig|83332.12.peg.3471","Rv3112","moaD1","Molybdopterin synthase sulfur carrier subunit","Cyclic pyranopterin monophosphate synthase (EC 4.6.1.17)","Hydrolase, haloacid dehalogenase-like family","synonymous_variantLOW"]
[7011,"NC_000962",3480474,"G","A","3742.72","115.0","1.00","Nonsyn","gga","gAa","401G>A","Gly134Glu",null,"fig|83332.12.peg.3472","Rv3113",null,"Hydrolase, haloacid dehalogenase-like family","Molybdopterin synthase sulfur carrier subunit","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",3480789,"T","C","7885.74","253.0","1.00",{"$nulls":10},"Hydrolase, haloacid dehalogenase-like family","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",3483714,"C","T","480.98","16.0","1.00","Synon","gac","gaT","939C>T","Asp313Asp",null,"fig|83332.12.peg.3476","Rv3116","moeB2","Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80)","Mobile element protein","Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)","synonymous_variantMODERATE"]
["MP1","NC_000962",3483714,"C","T","7558.88","222.0","1.00","Synon","gac","gaT","939C>T","Asp313Asp",null,"fig|83332.12.peg.3476","Rv3116","moeB2","Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80)","Mobile element protein","Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)","synonymous_variantMODERATE"]
["MP2","NC_000962",3485271,"A","G","8824.96","256.0","1.00","Nonsyn","cac","cGc","140A>G","His47Arg",null,"fig|83332.12.peg.3479","Rv3119","moaE1","Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12)","Sulfur metabolism protein SseC","SAM-dependent methyltransferase","missense_variantMODERATE"]
["MP1","NC_000962",3485271,"A","G","7689.28","225.0","1.00","Nonsyn","cac","cGc","140A>G","His47Arg",null,"fig|83332.12.peg.3479","Rv3119","moaE1","Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12)","Sulfur metabolism protein SseC","SAM-dependent methyltransferase","missense_variantMODERATE"]
[64,"NC_000962",3486455,"G","C","1989.67","60.0","1.00",{"$nulls":10},"SAM-dependent methyltransferase","hypothetical protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",3486977,"A","G","3201.91","101.0","1.00","Nonsyn","aaa","Gaa","307A>G","Lys103Glu",null,"fig|83332.12.peg.3481","Rv3121","cyMP141","hypothetical protein","SAM-dependent methyltransferase","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",3488556,"G","T","1638.88","56.0","0.97","Nonsyn","agg","agT","423G>T","Arg141Ser",null,"fig|83332.12.peg.3483","Rv3122",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",3488687,"G","A","3955.4","124.0","0.99",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",3488687,"G","A",{"v":572443,"d":"572,443"},"21.0","0.95",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",3489340,"C","G","7184.33","209.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionLOW"]
[58,"NC_000962",3498418,"A","G","2900.2","95.0","0.97","Nonsyn","att","aCt","848T>C","Ile283Thr",null,"fig|83332.12.peg.3497","Rv3132c","devS","Two component system sensor histidine kinase DevS","Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2","Two component transcriptional regulatory protein DevR","missense_variantMODERATE"]
[64,"NC_000962",3498418,"A","G","3540.65","120.0","0.94","Nonsyn","att","aCt","848T>C","Ile283Thr",null,"fig|83332.12.peg.3497","Rv3132c","devS","Two component system sensor histidine kinase DevS","Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2","Two component transcriptional regulatory protein DevR","missense_variantMODERATE"]
[7739,"NC_000962",3500513,"G","C","2430.89","85.0","0.98","Synon","gtc","gtG","210C>G","Val70Val",null,"fig|83332.12.peg.3499","Rv3134c",null,"Universal stress protein family","Two component transcriptional regulatory protein DevR","PPE family protein, SVP subgroup ","synonymous_variantLOW"]
[7011,"NC_000962",3501430,"G","A","1219.14","47.0","0.96","Nonsyn","gcg","Acg","97G>A","Ala33Thr",null,"fig|83332.12.peg.3500","Rv3135","PPE50","PPE family protein, SVP subgroup ","Universal stress protein family","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
["G01492","NC_000962",3501679,"G","A","3424.93","126.0","0.97","Nonsyn","gcc","Acc","346G>A","Ala116Thr",null,"fig|83332.12.peg.3500","Rv3135","PPE50","PPE family protein, SVP subgroup ","Universal stress protein family","PPE family protein, SVP subgroup ","missense_variantMODERATE"]
["G01222","NC_000962",3501687,"C","T",{"v":597807,"d":"597,807"},"19.0","1.00","Synon","gtc","gtT","354C>T","Val118Val",null,"fig|83332.12.peg.3500","Rv3135","PPE50","PPE family protein, SVP subgroup ","Universal stress protein family","PPE family protein, SVP subgroup ","synonymous_variantLOW"]
["MP1","NC_000962",3501687,"C","T","2033.78","67.0","1.00","Synon","gtc","gtT","354C>T","Val118Val",null,"fig|83332.12.peg.3500","Rv3135","PPE50","PPE family protein, SVP subgroup ","Universal stress protein family","PPE family protein, SVP subgroup ","synonymous_variantLOW"]
[64,"NC_000962",3501790,"C","A","3926.9","115.0","1.00",{"$nulls":10},"PPE family protein, SVP subgroup ","PPE family protein, SVP subgroup ","intergenic_regionMODIFIER"]
[7739,"NC_000962",3503895,"C","T","2700.18","86.0","1.00","Nonsyn","ccg","cTg","503C>T","Pro168Leu",null,"fig|83332.12.peg.3503","Rv3137",null,"Histidinol-phosphatase [alternative form] (EC 3.1.3.15)","hypothetical protein","COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like","missense_variantMODERATE"]
[58,"NC_000962",3503895,"C","T","2844.49","89.0","0.99","Nonsyn","ccg","cTg","503C>T","Pro168Leu",null,"fig|83332.12.peg.3503","Rv3137",null,"Histidinol-phosphatase [alternative form] (EC 3.1.3.15)","hypothetical protein","COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like","missense_variantMODERATE"]
[7011,"NC_000962",3505005,"A","C","1776.82","60.0","0.98","Nonsyn","acc","Ccc","811A>C","Thr271Pro",null,"fig|83332.12.peg.3504","Rv3138","pflA","COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like","Histidinol-phosphatase [alternative form] (EC 3.1.3.15)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE24","missense_variantMODIFIER"]
["G01492","NC_000962",3509091,"G","C","11032.4","358.0","0.98",{"$nulls":10},"Probable NADPH quinone oxidoreductase FadB4","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",3510120,"T","G","1000.79","33.0","1.00","Nonsyn","aag","Cag","1198A>C","Lys400Gln",null,"fig|83332.12.peg.3510","Rv3144c","PPE52","PPE family protein, MPTR subgroup ","Putative response regulator","NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)","missense_variantMODERATE"]
["MP1","NC_000962",3510120,"T","G","5880.25","173.0","1.00","Nonsyn","aag","Cag","1198A>C","Lys400Gln",null,"fig|83332.12.peg.3510","Rv3144c","PPE52","PPE family protein, MPTR subgroup ","Putative response regulator","NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)","missense_variantMODERATE"]
["MP1","NC_000962",3510642,"T","C","3261.42","114.0","1.00","Nonsyn","agc","Ggc","676A>G","Ser226Gly",null,"fig|83332.12.peg.3510","Rv3144c","PPE52","PPE family protein, MPTR subgroup ","Putative response regulator","NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)","missense_variantMODERATE"]
[58,"NC_000962",3510859,"C","T",{"v":915755,"d":"915,755"},"32.0","1.00","Synon","ggg","ggA","459G>A","Gly153Gly",null,"fig|83332.12.peg.3510","Rv3144c","PPE52","PPE family protein, MPTR subgroup ","Putative response regulator","NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)","synonymous_variantLOW"]
[7011,"NC_000962",3518167,"A","G","1997.38","68.0","1.00","Nonsyn","ata","atG","1422A>G","Ile474Met",null,"fig|83332.12.peg.3517","Rv3151","nuoG","NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)","missense_variantMODERATE"]
[7739,"NC_000962",3518167,"A","G","2036.65","68.0","1.00","Nonsyn","ata","atG","1422A>G","Ile474Met",null,"fig|83332.12.peg.3517","Rv3151","nuoG","NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)","missense_variantMODERATE"]
["G01498","NC_000962",3518555,"A","G","1544.52","51.0","1.00","Nonsyn","acg","Gcg","1810A>G","Thr604Ala",null,"fig|83332.12.peg.3517","Rv3151","nuoG","NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)","missense_variantMODERATE"]
["G01491","NC_000962",3521044,"A","G","3956.46","126.0","1.00","Nonsyn","acg","Gcg","406A>G","Thr136Ala",null,"fig|83332.12.peg.3519","Rv3153","nuoI","NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)","missense_variantMODERATE"]
[54,"NC_000962",3521044,"A","G",{"v":241246,"d":"241,246"},"10.0","0.83","Nonsyn","acg","Gcg","406A>G","Thr136Ala",null,"fig|83332.12.peg.3519","Rv3153","nuoI","NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)","NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)","missense_variantMODERATE"]
["MP2","NC_000962",3529067,"G","C","4979.68","149.0","0.99","Nonsyn","cgt","Ggt","97C>G","Arg33Gly",null,"fig|83332.12.peg.3525","Rv3159c","PPE53","PPE family protein, MPTR subgroup ","NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)","Transcriptional regulator, AcrR family","missense_variantMODERATE"]
[58,"NC_000962",3530955,"C","G","3156.6","101.0","0.99","Nonsyn","gtc","Ctc","184G>C","Val62Leu",null,"fig|83332.12.peg.3527","Rv3161c",null,"Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit","Transcriptional regulator, AcrR family","putative membrane protein","missense_variantMODERATE"]
[7011,"NC_000962",3542163,"T","C","3022.9","98.0","1.00","Nonsyn","gtg","gCg","26T>C","Val9Ala",null,"fig|83332.12.peg.3540","Rv3174",null,"Oxidoreductase, short-chain dehydrogenase/reductase family","Transcriptional regulator, AcrR family","Amidase","missense_variantMODERATE"]
["G01492","NC_000962",3543451,"G","T","11631.8","379.0","0.97","Nonsyn","ggc","Tgc","586G>T","Gly196Cys",null,"fig|83332.12.peg.3541","Rv3175",null,"Amidase","Oxidoreductase, short-chain dehydrogenase/reductase family","Epoxide hydrolase (EC 3.3.2.9)","missense_variantMODIFIER"]
[7739,"NC_000962",3543451,"G","T","2020.69","66.0","0.99","Nonsyn","ggc","Tgc","586G>T","Gly196Cys",null,"fig|83332.12.peg.3541","Rv3175",null,"Amidase","Oxidoreductase, short-chain dehydrogenase/reductase family","Epoxide hydrolase (EC 3.3.2.9)","missense_variantMODERATE"]
["G01492","NC_000962",3555085,"C","T","7848.74","261.0","0.96","Synon","ttc","ttT","132C>T","Phe44Phe",null,"fig|83332.12.peg.3559","Rv3189",null,"hypothetical protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",3555699,"A","G","1110.78","34.0","0.97","Nonsyn","gtg","gCg","989T>C","Val330Ala",null,"fig|83332.12.peg.3560","Rv3190c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",3555699,"A","G","8813.08","264.0","0.99","Nonsyn","gtg","gCg","989T>C","Val330Ala",null,"fig|83332.12.peg.3560","Rv3190c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",3556275,"A","G","1555.33","51.0","1.00","Nonsyn","ctg","cCg","413T>C","Leu138Pro",null,"fig|83332.12.peg.3560","Rv3190c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",3558601,"G","T","1600.08","56.0","0.97",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",3560645,"C","T","2269.79","73.0","0.97","Nonsyn","cgg","cAg","2504G>A","Arg835Gln",null,"fig|83332.12.peg.3567","Rv3193c",null,"UPF0182 membrane protein Mvan_1814","hypothetical protein","Lon-like protease with PDZ domain","missense_variantLOW"]
["G01491","NC_000962",3564910,"C","A","4540.38","147.0","0.98","Nonsyn","ctg","Atg","529C>A","Leu177Met",null,"fig|83332.12.peg.3569","Rv3195",null,"Uncharacterized protein SCO5199","Lon-like protease with PDZ domain","FIG00822196: hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",3564910,"C","A","8090.9","267.0","0.99","Nonsyn","ctg","Atg","529C>A","Leu177Met",null,"fig|83332.12.peg.3569","Rv3195",null,"Uncharacterized protein SCO5199","Lon-like protease with PDZ domain","FIG00822196: hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",3568004,"C","A",{"v":533571,"d":"533,571"},"19.0","1.00","Synon","cgc","cgA","966C>A","Arg322Arg",null,"fig|83332.12.peg.3572","Rv3197",null,"ABC1 family protein","hypothetical protein","Transcriptional regulator, WhiB family ","synonymous_variantLOW"]
["MP1","NC_000962",3568004,"C","A","7290.47","222.0","1.00","Synon","cgc","cgA","966C>A","Arg322Arg",null,"fig|83332.12.peg.3572","Rv3197",null,"ABC1 family protein","hypothetical protein","Transcriptional regulator, WhiB family ","synonymous_variantLOW"]
[7739,"NC_000962",3571834,"T","G","3094.94","97.0","0.99","Nonsyn","cag","cCg","692A>C","Gln231Pro",null,"fig|83332.12.peg.3577","Rv3199c","nudC","NADH pyrophosphatase (EC 3.6.1.22), decaps 5'-NAD modified RNA","hypothetical protein","Potassium channel protein","missense_variantMODERATE"]
[58,"NC_000962",3573636,"T","C","1031.47","39.0","0.91","Nonsyn","aac","Gac","34A>G","Asn12Asp",null,"fig|83332.12.peg.3578","Rv3200c",null,"Potassium channel protein","NADH pyrophosphatase (EC 3.6.1.22), decaps 5'-NAD modified RNA","ATP-dependent DNA helicase SCO5184","missense_variantMODERATE"]
[7011,"NC_000962",3580636,"CTT","CT","2261.91","77.0","0.93","Deletion",null,null,"1delT","Leu1fs",{"$nulls":5},"Uncharacterized protein MSMEG_3540","Lipase LipV (EC 3.1.1.1)","frameshift_variantHIGH"]
["G01492","NC_000962",3581414,"A","G","13131.6","418.0","1.00","Nonsyn","aca","Gca","100A>G","Thr34Ala",null,"fig|83332.12.peg.3583","Rv3204",null,"Methylated-DNA--protein-cysteine methyltransferase","Lipase LipV (EC 3.1.1.1)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",3585433,"A","G","1293.06","40.0","1.00","Nonsyn","acc","Gcc","430A>G","Thr144Ala",null,"fig|83332.12.peg.3587","Rv3208",null,"Transcriptional regulator SCO5170, AcrR family","FIG00820929: hypothetical protein","Putative ATP-binding protein","missense_variantMODERATE"]
["G01491","NC_000962",3585433,"A","G","4179.44","137.0","0.99","Nonsyn","acc","Gcc","430A>G","Thr144Ala",null,"fig|83332.12.peg.3587","Rv3208",null,"Transcriptional regulator SCO5170, AcrR family","FIG00820929: hypothetical protein","Putative ATP-binding protein","missense_variantMODERATE"]
[54,"NC_000962",3585433,"A","G","211.69","14.0","0.74","Nonsyn","acc","Gcc","430A>G","Thr144Ala",null,"fig|83332.12.peg.3587","Rv3208",null,"Transcriptional regulator SCO5170, AcrR family","FIG00820929: hypothetical protein","Putative ATP-binding protein","missense_variantMODERATE"]
["MP2","NC_000962",3590686,"GT","GCT","3058.32","98.0","0.97","Insertion",{"$nulls":9},"putative membrane protein","ParA-like protein","intergenic_regionMODIFIER"]
[58,"NC_000962",3591063,"T","C",{"v":806595,"d":"806,595"},"26.0","0.96","Nonsyn","aag","Gag","430A>G","Lys144Glu",null,"fig|83332.12.peg.3594","Rv3213c",null,"ParA-like protein","putative membrane protein","Fructose-1,6-bisphosphatase, Mycobacterial type SUMP1 (EC 3.1.3.11)","missense_variantMODERATE"]
[7011,"NC_000962",3593557,"C","T","4107.08","144.0","0.99","Nonsyn","gcc","gTc","38C>T","Ala13Val",null,"fig|83332.12.peg.3597","Rv3216",null,"Acetyltransferase, GNAT family","Isochorismate synthase (EC 5.4.4.2)","Integral membrane protein","missense_variantLOW"]
["G01492","NC_000962",3596599,"C","T","8808.32","286.0","1.00","Synon","gtg","gtA","936G>A","Val312Val",null,"fig|83332.12.peg.3601","Rv3220c",null,"Signal transduction histidine kinase, subgroup 2","WhiB-like transcription regulator","Biotin carboxyl carrier protein","synonymous_variantLOW"]
[54,"NC_000962",3596599,"C","T","3407.49","144.0","0.82","Synon","gtg","gtA","936G>A","Val312Val",null,"fig|83332.12.peg.3601","Rv3220c",null,"Signal transduction histidine kinase, subgroup 2","WhiB-like transcription regulator","Biotin carboxyl carrier protein","synonymous_variantLOW"]
[54,"NC_000962",3598626,"G","T","6473.63","202.0","0.99","Synon","ccc","ccA","132C>A","Pro44Pro",null,"fig|83332.12.peg.3604","Rv3222c",null,"hypothetical protein","Anti-sigma factor","RNA polymerase sigma factor RpoE","synonymous_variantLOW"]
["G01222","NC_000962",3604821,"G","C",{"v":910164,"d":"910,164"},"37.0","1.00","Synon","gcg","gcC","96G>C","Ala32Ala",null,"fig|83332.12.peg.3611","Rv3228",null,"Ribosome small subunit biogenesis RbfA-release protein RsgA","3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)","Linoleoyl-CoA desaturase (EC 1.14.19.3) @ Stearoyl-CoA 9-desaturase","synonymous_variantLOW"]
["MP1","NC_000962",3604821,"G","C","2557.62","77.0","1.00","Synon","gcg","gcC","96G>C","Ala32Ala",null,"fig|83332.12.peg.3611","Rv3228",null,"Ribosome small subunit biogenesis RbfA-release protein RsgA","3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)","Linoleoyl-CoA desaturase (EC 1.14.19.3) @ Stearoyl-CoA 9-desaturase","synonymous_variantLOW"]
[64,"NC_000962",3610391,"AG","ACG",{"v":831173,"d":"831,173"},"27.0","0.96","Insertion","gactcc","gaCGTcc","798_799insG","AsMP266_Ser267fs","yes","fig|83332.12.peg.3617","Rv3234c",null,"Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","FIG00820824: hypothetical protein","frameshift_variantLOW"]
[7739,"NC_000962",3614982,"T","C","3701.98","112.0","1.00","Synon","cta","ctG","2682A>G","Leu894Leu",null,"fig|83332.12.peg.3622","Rv3239c",null,"cAMP-binding MFS-type transporter with patatin-like domain Rv3239c family ","putative membrane protein","Protein translocase subunit SecA","synonymous_variantLOW"]
["G01498","NC_000962",3618932,"T","C","1917.38","70.0","0.91","Nonsyn","aaa","Gaa","1564A>G","Lys522Glu",null,"fig|83332.12.peg.3623","Rv3240c","secA1","Protein translocase subunit SecA","cAMP-binding MFS-type transporter with patatin-like domain Rv3239c family ","Ribosome hibernation promoting factor Hpf","missense_variantMODERATE"]
["G01491","NC_000962",3621423,"A","G","4484.21","139.0","1.00",{"$nulls":10},"Ribosome hibernation promoting factor Hpf","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",3621423,"A","G","13904.8","430.0","0.98",{"$nulls":10},"Ribosome hibernation promoting factor Hpf","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",3622441,"A","C","6855.37","203.0","0.99","Synon","gtt","gtG","603T>G","Val201Val",null,"fig|83332.12.peg.3627","Rv3243c",null,"hypothetical protein","Competence protein F homolog, phosphoribosyltransferase domain","Lipoprotein LpqB, modulates activity of MtrAB two-component system","synonymous_variantLOW"]
["MP1","NC_000962",3622441,"A","C","6321.89","198.0","1.00","Synon","gtt","gtG","603T>G","Val201Val",null,"fig|83332.12.peg.3627","Rv3243c",null,"hypothetical protein","Competence protein F homolog, phosphoribosyltransferase domain","Lipoprotein LpqB, modulates activity of MtrAB two-component system","synonymous_variantLOW"]
[58,"NC_000962",3624350,"C","A","1196.0","38.0","1.00","Synon","gcg","gcT","561G>T","Ala187Ala",null,"fig|83332.12.peg.3628","Rv3244c","lpqB","Lipoprotein LpqB, modulates activity of MtrAB two-component system","hypothetical protein","Two component system sensor histidine kinase MtrB","synonymous_variantLOW"]
[58,"NC_000962",3624486,"T","C","2979.8","92.0","1.00","Nonsyn","gat","gGt","425A>G","AsMP142Gly",null,"fig|83332.12.peg.3628","Rv3244c","lpqB","Lipoprotein LpqB, modulates activity of MtrAB two-component system","hypothetical protein","Two component system sensor histidine kinase MtrB","missense_variantMODERATE"]
[7011,"NC_000962",3625065,"T","G","3011.37","97.0","0.98","Nonsyn","atg","Ctg","1549A>C","Met517Leu",null,"fig|83332.12.peg.3629","Rv3245c","mtrB","Two component system sensor histidine kinase MtrB","Lipoprotein LpqB, modulates activity of MtrAB two-component system","Two component system response regulator MtrA","missense_variantMODERATE"]
["G01492","NC_000962",3630303,"G","A","10404.6","340.0","0.98","Synon","ctg","Ttg","55C>T","Leu19Leu",null,"fig|83332.12.peg.3633","Rv3249c",null,"Transcriptional regulator, AcrR family","Adenosylhomocysteinase (EC 3.3.1.1)","Rubredoxin","synonymous_variantLOW"]
["G01222","NC_000962",3638093,"G","A",{"v":914315,"d":"914,315"},"30.0","0.97","Nonsyn","tcg","tTg","596C>T","Ser199Leu",null,"fig|83332.12.peg.3641","Rv3257c","manB","Phosphomannomutase (EC 5.4.2.8)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",3638093,"G","A","7160.56","209.0","1.00","Nonsyn","tcg","tTg","596C>T","Ser199Leu",null,"fig|83332.12.peg.3641","Rv3257c","manB","Phosphomannomutase (EC 5.4.2.8)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",3647041,"A","G","3238.99","109.0","0.96","Nonsyn","tcg","Ccg","769T>C","Ser257Pro",null,"fig|83332.12.peg.3653","Rv3266c","rmlD","dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)","N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase (EC 2.4.1.289)","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1","missense_variantMODERATE"]
["MP2","NC_000962",3647041,"A","G","6108.46","177.0","0.99","Nonsyn","tcg","Ccg","769T>C","Ser257Pro",null,"fig|83332.12.peg.3653","Rv3266c","rmlD","dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)","N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase (EC 2.4.1.289)","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1","missense_variantMODIFIER"]
[58,"NC_000962",3658266,"C","G",{"v":410548,"d":"410,548"},"14.0","1.00","Nonsyn","ggt","Cgt","373G>C","Gly125Arg",null,"fig|83332.12.peg.3662","Rv3275c","purE","N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE25","N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18)","missense_variantMODERATE"]
[7011,"NC_000962",3661382,"C","T","3114.97","103.0","1.00","Nonsyn","gac","Aac","631G>A","AsMP211Asn",null,"fig|83332.12.peg.3666","Rv3279c","birA","Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)","FIG00995613: hypothetical protein","Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)","missense_variantMODERATE"]
["G01492","NC_000962",3668591,"C","A","9505.76","305.0","0.99","Nonsyn","gaa","Taa","301G>T","Glu101*",null,"fig|83332.12.peg.3673","Rv3286c","sigF","RNA polymerase sigma factor SigB","Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) / Biotin carboxyl carrier protein of acetyl-CoA carboxylase","Serine-protein kinase RsbW (EC 2.7.11.1)","stop_gainedLOW"]
["G01222","NC_000962",3673625,"C","G","1146.94","37.0","1.00","Nonsyn","atc","atG","24C>G","Ile8Met",null,"fig|83332.12.peg.3680","Rv3293","pcd","Aldehyde dehydrogenase B (EC 1.2.1.22)","Uncharacterized protein Rv3292/MT3391","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",3673625,"C","G","1149.29","40.0","0.98","Nonsyn","atc","atG","24C>G","Ile8Met",null,"fig|83332.12.peg.3680","Rv3293","pcd","Aldehyde dehydrogenase B (EC 1.2.1.22)","Uncharacterized protein Rv3292/MT3391","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",3674985,"G","A","6677.32","197.0","1.00","Nonsyn","gag","Aag","1384G>A","Glu462Lys",null,"fig|83332.12.peg.3680","Rv3293","pcd","Aldehyde dehydrogenase B (EC 1.2.1.22)","Uncharacterized protein Rv3292/MT3391","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",3676007,"AACCACCACCACCT","AACCACCACCT",{"v":666003,"d":"666,003"},"21.0","0.88","Deletion",{"$nulls":9},"hypothetical protein","Transcriptional regulator Rv3295, AcrR family","intergenic_regionMODIFIER"]
[64,"NC_000962",3676007,"AACCACCACCACCT","AACCACCACCT",{"v":450816,"d":"450,816"},"14.0","1.00","Deletion",{"$nulls":9},"hypothetical protein","Transcriptional regulator Rv3295, AcrR family","intergenic_regionMODIFIER"]
[7739,"NC_000962",3679949,"A","G","2437.03","83.0","1.00","Nonsyn","aaa","Gaa","3175A>G","Lys1059Glu",null,"fig|83332.12.peg.3684","Rv3296","lhr","Probable ATP-dependent helicase lhr (EC 3.6.1.-)","Transcriptional regulator Rv3295, AcrR family","Endonuclease VIII","missense_variantMODERATE"]
["G01498","NC_000962",3681548,"A","C","3643.12","119.0","1.00","Synon","agg","Cgg","229A>C","Arg77Arg",null,"fig|83332.12.peg.3685","Rv3297","nei","Endonuclease VIII","Probable ATP-dependent helicase lhr (EC 3.6.1.-)","Esterase lipoprotein LpqC","synonymous_variantLOW"]
["G01491","NC_000962",3689523,"G","T","4468.03","140.0","1.00","Nonsyn","tgc","tgA","1416C>A","Cys472*",null,"fig|83332.12.peg.3691","Rv3303c","lpdA","NAD(P)H quinone reductase LpdA (EC 1.6.5.2)","Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)","AIG2-like domain protein","stop_gainedHIGH"]
[54,"NC_000962",3689523,"G","T","22100.5","682.0","1.00","Nonsyn","tgc","tgA","1416C>A","Cys472*",null,"fig|83332.12.peg.3691","Rv3303c","lpdA","NAD(P)H quinone reductase LpdA (EC 1.6.5.2)","Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)","AIG2-like domain protein","stop_gainedHIGH"]
["MP2","NC_000962",3690016,"A","G","5779.29","169.0","1.00","Nonsyn","ttg","tCg","923T>C","Leu308Ser",null,"fig|83332.12.peg.3691","Rv3303c","lpdA","NAD(P)H quinone reductase LpdA (EC 1.6.5.2)","Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)","AIG2-like domain protein","missense_variantMODERATE"]
[58,"NC_000962",3693681,"A","C","1643.62","54.0","0.96","Synon","gct","gcG","309T>G","Ala103Ala",null,"fig|83332.12.peg.3694","Rv3306c","amiB1","N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)","Possible N-acyl-L-amino acid amidohydrolase amiA1 (EC 3.5.1.-)","Purine nucleoside phosphorylase (EC 2.4.2.1)","synonymous_variantLOW"]
[7739,"NC_000962",3697708,"A","G","3027.69","95.0","1.00","Nonsyn","acg","Gcg","451A>G","Thr151Ala",null,"fig|83332.12.peg.3698","Rv3310",null,"Acid phosphatase (EC 3.1.3.2)","Uracil phosphoribosyltransferase (EC 2.4.2.9)","Uncharacterized protein Rv3311","missense_variantMODERATE"]
[58,"NC_000962",3697708,"A","G","1013.15","33.0","1.00","Nonsyn","acg","Gcg","451A>G","Thr151Ala",null,"fig|83332.12.peg.3698","Rv3310",null,"Acid phosphatase (EC 3.1.3.2)","Uracil phosphoribosyltransferase (EC 2.4.2.9)","Uncharacterized protein Rv3311","missense_variantMODERATE"]
[7011,"NC_000962",3700356,"T","C","3143.88","99.0","0.99","Nonsyn","tga","tgG","171A>G","Ter57Trpext*?",null,"fig|83332.12.peg.3701",null,null,"hypothetical protein","Hydrolase, alpha/beta fold family","hypothetical protein","stop_lostHIGH"]
["G01492","NC_000962",3702451,"C","A","11232.1","379.0","0.97","Nonsyn","atg","atT","1017G>T","Met339Ile",null,"fig|83332.12.peg.3704","Rv3314c","deoA","Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)","Adenosine deaminase (EC 3.5.4.4)","Cytidine deaminase (EC 3.5.4.5)","missense_variantMODERATE"]
["G01222","NC_000962",3702543,"G","A",{"v":646733,"d":"646,733"},"21.0","1.00","Nonsyn","cgg","Tgg","925C>T","Arg309Trp",null,"fig|83332.12.peg.3704","Rv3314c","deoA","Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)","Adenosine deaminase (EC 3.5.4.4)","Cytidine deaminase (EC 3.5.4.5)","missense_variantLOW"]
["MP1","NC_000962",3702543,"G","A","6410.66","195.0","1.00","Nonsyn","cgg","Tgg","925C>T","Arg309Trp",null,"fig|83332.12.peg.3704","Rv3314c","deoA","Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)","Adenosine deaminase (EC 3.5.4.4)","Cytidine deaminase (EC 3.5.4.5)","missense_variantLOW"]
[64,"NC_000962",3704596,"G","C","4920.66","148.0","1.00","Nonsyn","gtg","Ctg","175G>C","Val59Leu",null,"fig|83332.12.peg.3707","Rv3317","sdhD","Succinate dehydrogenase hydrophobic membrane anchor protein","Succinate dehydrogenase cytochrome b-556 subunit","Succinate dehydrogenase flavoprotein subunit (EC 1.3.5.1)","missense_variantMODERATE"]
[7739,"NC_000962",3707963,"C","G","2531.61","88.0","0.98","Nonsyn","tgg","tgC","108G>C","TrG01222Cys",null,"fig|83332.12.peg.3710","Rv3320c",null,"toxin VapC44 @ Toxin 1, PIN domain","Succinate dehydrogenase iron-sulfur protein (EC 1.3.5.1)","antitoxin VapB44 @ Antitoxin to Toxin 1, PIN domain","missense_variantMODERATE"]
["G01498","NC_000962",3709604,"T","A","2485.53","82.0","1.00","Nonsyn","caa","caT","111A>T","Gln37His",null,"fig|83332.12.peg.3713","Rv3323c","moaX","Molybdopterin synthase sulfur carrier subunit / Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12)","SAM-dependent methyltransferase","Cyclic pyranopterin monophosphate synthase (EC 4.6.1.17)","missense_variantLOW"]
[7011,"NC_000962",3709604,"T","A","2994.85","97.0","0.98","Nonsyn","caa","caT","111A>T","Gln37His",null,"fig|83332.12.peg.3713","Rv3323c","moaX","Molybdopterin synthase sulfur carrier subunit / Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12)","SAM-dependent methyltransferase","Cyclic pyranopterin monophosphate synthase (EC 4.6.1.17)","missense_variantMODERATE"]
["G01492","NC_000962",3714211,"G","T","9489.66","310.0","0.99","Nonsyn","ccg","cAg","131C>A","Pro44Gln",null,"fig|83332.12.peg.3719","Rv3328c","sigJ","Putative RNA polymerase sigma factor","hypothetical protein","Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)","missense_variantMODERATE"]
[7739,"NC_000962",3714757,"A","C","3253.35","99.0","1.00","Nonsyn","caa","caC","366A>C","Gln122His",null,"fig|83332.12.peg.3720","Rv3329",null,"Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)","Putative RNA polymerase sigma factor","D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","missense_variantMODERATE"]
[54,"NC_000962",3714757,"A","C","13839.9","421.0","0.97","Nonsyn","caa","caC","366A>C","Gln122His",null,"fig|83332.12.peg.3720","Rv3329",null,"Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)","Putative RNA polymerase sigma factor","D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","missense_variantMODERATE"]
["MP2","NC_000962",3717683,"C","T","7557.35","226.0","0.99","Synon","tac","taT","369C>T","Tyr123Tyr",null,"fig|83332.12.peg.3723","Rv3331","sugI","hypothetical protein","hypothetical protein","N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)","synonymous_variantLOW"]
[58,"NC_000962",3718357,"C","T","2689.43","84.0","1.00","Nonsyn","ccg","cTg","1043C>T","Pro348Leu",null,"fig|83332.12.peg.3723","Rv3331","sugI","hypothetical protein","hypothetical protein","N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)","missense_variantMODERATE"]
[7011,"NC_000962",3721806,"G","C","2362.24","78.0","1.00","Synon","ggc","ggG","795C>G","Gly265Gly",null,"fig|83332.12.peg.3727","Rv3335c",null,"putative membrane protein","Transcriptional regulator, MerR family","Tryptophanyl-tRNA synthetase (EC 6.1.1.2)","synonymous_variantLOW"]
["G01492","NC_000962",3723901,"GTT","GTTT","7763.72","273.0","0.90","Insertion",{"$nulls":9},"Tryptophanyl-tRNA synthetase (EC 6.1.1.2)","Hydrolase, alpha/beta fold family","intergenic_regionHIGH"]
["G01498","NC_000962",3723901,"GTT","GTTT","1550.47","49.0","0.91","Insertion",{"$nulls":9},"Tryptophanyl-tRNA synthetase (EC 6.1.1.2)","Hydrolase, alpha/beta fold family","intergenic_regionHIGH"]
["G01491","NC_000962",3724306,"C","T","4630.69","152.0","0.93","Synon","ctg","Ttg","391C>T","Leu131Leu",null,"fig|83332.12.peg.3729","Rv3338",null,"Hydrolase, alpha/beta fold family","Tryptophanyl-tRNA synthetase (EC 6.1.1.2)","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","synonymous_variantLOW"]
[54,"NC_000962",3724306,"C","T","16830.7","522.0","1.00","Synon","ctg","Ttg","391C>T","Leu131Leu",null,"fig|83332.12.peg.3729","Rv3338",null,"Hydrolase, alpha/beta fold family","Tryptophanyl-tRNA synthetase (EC 6.1.1.2)","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","synonymous_variantLOW"]
["MP2","NC_000962",3725701,"G","A","4763.15","141.0","1.00","Synon","ggc","ggT","144C>T","Gly48Gly",null,"fig|83332.12.peg.3730","Rv3339c","icd1","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","Hydrolase, alpha/beta fold family","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",3732344,"G","A","3539.83","126.0","1.00","Nonsyn","gcc","gTc","4577C>T","Ala1526Val",null,"fig|83332.12.peg.3735","Rv3343c","PPE54","PPE family protein, MPTR subgroup ","SAM-dependent methyltransferase","PE_PGRS family protein ","missense_variantMODERATE"]
["G01491","NC_000962",3732624,"A","G","2263.57","76.0","0.97","Synon","ttg","Ctg","4297T>C","Leu1433Leu",null,"fig|83332.12.peg.3735","Rv3343c","PPE54","PPE family protein, MPTR subgroup ","SAM-dependent methyltransferase","PE_PGRS family protein ","synonymous_variantLOW"]
["G01498","NC_000962",3736628,"T","G","7599.64","250.0","0.98","Nonsyn","gag","gCg","293A>C","Glu98Ala",null,"fig|83332.12.peg.3735","Rv3343c","PPE54","PPE family protein, MPTR subgroup ","SAM-dependent methyltransferase","PE_PGRS family protein ","missense_variantMODERATE"]
["G01491","NC_000962",3740215,"C","T","6433.04","215.0","0.95","Nonsyn","ggt","Agt","2554G>A","Gly852Ser",null,"fig|83332.12.peg.3737","Rv3345c","PE_PGRS50","PE_PGRS family protein ","PE_PGRS family protein ","FIG00824674: hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",3740215,"C","T","13106.7","438.0","0.96","Nonsyn","ggt","Agt","2554G>A","Gly852Ser",null,"fig|83332.12.peg.3737","Rv3345c","PE_PGRS50","PE_PGRS family protein ","PE_PGRS family protein ","FIG00824674: hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",3764381,"T","C",{"v":806041,"d":"806,041"},"27.0","1.00","Nonsyn","aac","Gac","2749A>G","Asn917Asp",null,"fig|83332.12.peg.3744","Rv3350c","PPE56","PPE family protein, MPTR subgroup ","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
["MP1","NC_000962",3764381,"T","C","5164.44","155.0","0.97","Nonsyn","aac","Gac","2749A>G","Asn917Asp",null,"fig|83332.12.peg.3744","Rv3350c","PPE56","PPE family protein, MPTR subgroup ","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
[64,"NC_000962",3766410,"C","G","1560.49","49.0","1.00","Synon","ggg","ggC","720G>C","Gly240Gly",null,"fig|83332.12.peg.3744","Rv3350c","PPE56","PPE family protein, MPTR subgroup ","hypothetical protein","Putative oxidoreductase","synonymous_variantLOW"]
[7739,"NC_000962",3772616,"G","A","3445.09","107.0","1.00",{"$nulls":10},"NADH:flavin oxidoreductases, Old Yellow Enzyme family","ABC transporter, ATP-binding protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",3773499,"G","C","2189.96","73.0","0.95","Nonsyn","cac","caG","69C>G","His23Gln",null,"fig|83332.12.peg.3755","Rv3361c",null,"Pentapeptide repeat family protein, MfpA ","ABC transporter, ATP-binding protein","Small Ras-like GTPase, component of G-protein-coupled receptor (GPCR) system","missense_variantMODERATE"]
["G01491","NC_000962",3776119,"G","T","5824.06","188.0","0.97","Synon","gcc","gcA","1383C>A","Ala461Ala",null,"fig|83332.12.peg.3759","Rv3365c",null,"Putative sensor and ATPase, component of G-protein-coupled receptor (GPCR) system","Roadblock/LC7 protein, putative GTPase-activating (GAP) component of G-protein-coupled receptor (GPCR) system","tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)","synonymous_variantLOW"]
[54,"NC_000962",3776119,"G","T","1337.3","48.0","0.96","Synon","gcc","gcA","1383C>A","Ala461Ala",null,"fig|83332.12.peg.3759","Rv3365c",null,"Putative sensor and ATPase, component of G-protein-coupled receptor (GPCR) system","Roadblock/LC7 protein, putative GTPase-activating (GAP) component of G-protein-coupled receptor (GPCR) system","tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)","synonymous_variantLOW"]
[58,"NC_000962",3776265,"G","T","4043.78","127.0","1.00","Synon","cga","Aga","1237C>A","Arg413Arg",null,"fig|83332.12.peg.3759","Rv3365c",null,"Putative sensor and ATPase, component of G-protein-coupled receptor (GPCR) system","Roadblock/LC7 protein, putative GTPase-activating (GAP) component of G-protein-coupled receptor (GPCR) system","tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)","synonymous_variantMODERATE"]
[54,"NC_000962",3776265,"G","T","17620.7","534.0","0.99","Synon","cga","Aga","1237C>A","Arg413Arg",null,"fig|83332.12.peg.3759","Rv3365c",null,"Putative sensor and ATPase, component of G-protein-coupled receptor (GPCR) system","Roadblock/LC7 protein, putative GTPase-activating (GAP) component of G-protein-coupled receptor (GPCR) system","tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)","synonymous_variantMODERATE"]
["MP2","NC_000962",3785946,"A","G","7913.32","230.0","1.00","Nonsyn","agg","Ggg","1015A>G","Arg339Gly",null,"fig|83332.12.peg.3765","Rv3371",null,"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7)","Trehalose-6-phosphate phosphatase (EC 3.1.3.12)","missense_variantMODERATE"]
[58,"NC_000962",3786033,"A","G",{"v":402581,"d":"402,581"},"15.0","0.94","Nonsyn","atc","Gtc","1102A>G","Ile368Val",null,"fig|83332.12.peg.3765","Rv3371",null,"Diacyglycerol O-acyltransferase (EC 2.3.1.20)","Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7)","Trehalose-6-phosphate phosphatase (EC 3.1.3.12)","missense_variantMODERATE"]
[7011,"NC_000962",3786548,"G","A","2852.31","100.0","0.98","Nonsyn","gaa","Aaa","235G>A","Glu79Lys",null,"fig|83332.12.peg.3766","Rv3372","otsB2","Trehalose-6-phosphate phosphatase (EC 3.1.3.12)","Diacyglycerol O-acyltransferase (EC 2.3.1.20)","hypothetical protein","missense_variantLOW"]
["G01492","NC_000962",3788365,"T","G","11860.8","375.0","0.98","Nonsyn","tga","Gga","625T>G","Ter209Glyext*?",null,"fig|83332.12.peg.3768","Rv3373","echA18","Enoyl-CoA hydratase (EC 4.2.1.17)","hypothetical protein","Enoyl-CoA hydratase (EC 4.2.1.17)","stop_lostHIGH"]
["G01222","NC_000962",3790489,"G","T",{"v":940037,"d":"940,037"},"31.0","1.00","Nonsyn","gtt","Ttt","334G>T","Val112Phe",null,"fig|83332.12.peg.3771","Rv3376",null,"Hydrolase, haloacid dehalogenase-like family","Glutamyl-tRNA(Gln) amidotransferase subunit A-like protein","Type B diterpene cyclase (EC 5.5.1.16)","missense_variantMODERATE"]
["MP1","NC_000962",3790489,"G","T","8882.91","263.0","1.00","Nonsyn","gtt","Ttt","334G>T","Val112Phe",null,"fig|83332.12.peg.3771","Rv3376",null,"Hydrolase, haloacid dehalogenase-like family","Glutamyl-tRNA(Gln) amidotransferase subunit A-like protein","Type B diterpene cyclase (EC 5.5.1.16)","missense_variantMODERATE"]
[54,"NC_000962",3790489,"G","T","1622.47","49.0","1.00","Nonsyn","gtt","Ttt","334G>T","Val112Phe",null,"fig|83332.12.peg.3771","Rv3376",null,"Hydrolase, haloacid dehalogenase-like family","Glutamyl-tRNA(Gln) amidotransferase subunit A-like protein","Type B diterpene cyclase (EC 5.5.1.16)","missense_variantMODERATE"]
["MP2","NC_000962",3790688,"T","A","9635.08","292.0","0.99","Nonsyn","gtt","gAt","533T>A","Val178Asp",null,"fig|83332.12.peg.3771","Rv3376",null,"Hydrolase, haloacid dehalogenase-like family","Glutamyl-tRNA(Gln) amidotransferase subunit A-like protein","Type B diterpene cyclase (EC 5.5.1.16)","missense_variantMODERATE"]
[58,"NC_000962",3794867,"CC","CCAC",{"v":903331,"d":"903,331"},"43.0","0.72","Insertion","ggtgtt","GTGGtgtt","162_163insGT","Ile54_Gly55fs","yes","fig|83332.12.peg.3775",null,null,"1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)","1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)","Mobile element protein","frameshift_variantHIGH"]
["G01492","NC_000962",3798095,"A","C","7999.82","262.0","1.00","Nonsyn","gtc","gGc","296T>G","Val99Gly",null,"fig|83332.12.peg.3779","Rv3383c","idsB","(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)","4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.7.4)","toxin VapC46 @ Toxin 1, PIN domain","missense_variantMODERATE"]
["G01498","NC_000962",3802105,"C","T","1726.71","57.0","0.97","Synon","gcc","gcT","453C>T","Ala151Ala",null,"fig|83332.12.peg.3784","Rv3388","PE_PGRS52","PE_PGRS family protein ","Transposase","Enoyl-CoA hydratase","synonymous_variantLOW"]
["G01491","NC_000962",3807852,"C","A","3831.85","119.0","1.00","Nonsyn","gtg","Ttg","586G>T","Val196Leu",null,"fig|83332.12.peg.3788","Rv3392c","cmaA1","Cyclopropane-fatty-acyl-phospholipid synthase 1, CmaA1 (EC 2.1.1.79)","Oxidoreductase, short-chain dehydrogenase/reductase family","Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)","missense_variantMODERATE"]
[54,"NC_000962",3807852,"C","A","15278.5","461.0","1.00","Nonsyn","gtg","Ttg","586G>T","Val196Leu",null,"fig|83332.12.peg.3788","Rv3392c","cmaA1","Cyclopropane-fatty-acyl-phospholipid synthase 1, CmaA1 (EC 2.1.1.79)","Oxidoreductase, short-chain dehydrogenase/reductase family","Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)","missense_variantMODERATE"]
["MP2","NC_000962",3808103,"T","C","9621.88","279.0","1.00","Nonsyn","aat","aGt","335A>G","Asn112Ser",null,"fig|83332.12.peg.3788","Rv3392c","cmaA1","Cyclopropane-fatty-acyl-phospholipid synthase 1, CmaA1 (EC 2.1.1.79)","Oxidoreductase, short-chain dehydrogenase/reductase family","Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)","missense_variantMODERATE"]
["MP1","NC_000962",3808103,"T","C","10472.6","309.0","1.00","Nonsyn","aat","aGt","335A>G","Asn112Ser",null,"fig|83332.12.peg.3788","Rv3392c","cmaA1","Cyclopropane-fatty-acyl-phospholipid synthase 1, CmaA1 (EC 2.1.1.79)","Oxidoreductase, short-chain dehydrogenase/reductase family","Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)","missense_variantMODERATE"]
[64,"NC_000962",3811327,"C","T","1989.64","66.0","0.99","Nonsyn","gtg","Atg","310G>A","Val104Met",null,"fig|83332.12.peg.3791","Rv3395c",null,"FIG00821108: hypothetical protein","DNA polymerase IV-like protein ImuB","putative membrane protein","missense_variantMODERATE"]
[7739,"NC_000962",3811629,"G","A","3658.09","116.0","0.99","Nonsyn","gcg","gTg","8C>T","Ala3Val",null,"fig|83332.12.peg.3791","Rv3395c",null,"FIG00821108: hypothetical protein","DNA polymerase IV-like protein ImuB","putative membrane protein","missense_variantMODERATE"]
["G01498","NC_000962",3811661,"G","A","2644.44","90.0","0.96","Nonsyn","atg","atA","27G>A","Met9Ile",null,"fig|83332.12.peg.3792","Rv3395A",null,"putative membrane protein","FIG00821108: hypothetical protein","GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)","missense_variantMODERATE"]
["G01491","NC_000962",3815477,"G","T","4530.59","139.0","0.99","Synon","gcc","gcA","432C>A","Ala144Ala",null,"fig|83332.12.peg.3795","Rv3398c","idsA1","(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)","Phytoene synthase (EC 2.5.1.32)","O-methyltransferase","synonymous_variantLOW"]
[54,"NC_000962",3815477,"G","T","3504.64","119.0","1.00","Synon","gcc","gcA","432C>A","Ala144Ala",null,"fig|83332.12.peg.3795","Rv3398c","idsA1","(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)","Phytoene synthase (EC 2.5.1.32)","O-methyltransferase","synonymous_variantLOW"]
[64,"NC_000962",3817117,"C","A","1611.66","52.0","1.00","Nonsyn","gcg","gAg","863C>A","Ala288Glu",null,"fig|83332.12.peg.3796","Rv3399",null,"O-methyltransferase","(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)","Hydrolase, haloacid dehalogenase-like family","missense_variantLOW"]
[64,"NC_000962",3820839,"G","C","2435.49","77.0","1.00","Nonsyn","tac","taG","981C>G","Tyr327*",null,"fig|83332.12.peg.3799","Rv3402c",null,"hypothetical protein","Uncharacterized glycosyl hydrolase Rv3401","FIG034901: hypothetical protein","stop_gainedHIGH"]
["MP2","NC_000962",3820839,"G","C","7297.15","215.0","1.00","Nonsyn","tac","taG","981C>G","Tyr327*",null,"fig|83332.12.peg.3799","Rv3402c",null,"hypothetical protein","Uncharacterized glycosyl hydrolase Rv3401","FIG034901: hypothetical protein","stop_gainedHIGH"]
[58,"NC_000962",3823159,"A","T",{"v":259955,"d":"259,955"},"10.0","1.00","Synon","gtt","gtA","678T>A","Val226Val",null,"fig|83332.12.peg.3800","Rv3403c",null,"FIG034901: hypothetical protein","hypothetical protein","formyltransferase","synonymous_variantLOW"]
[7011,"NC_000962",3823866,"C","T","3011.15","101.0","0.99",{"$nulls":10},"FIG034901: hypothetical protein","formyltransferase","intergenic_regionMODIFIER"]
["G01492","NC_000962",3826684,"C","T","9946.86","318.0","0.99","Nonsyn","tcg","tTg","128C>T","Ser43Leu",null,"fig|83332.12.peg.3805","Rv3408",null,"toxin VapC47 @ Toxin 1, PIN domain","antitoxin VapB47 @ Antitoxin to Toxin 1, PIN domain","Cholesterol oxidase (EC 1.1.3.6) @ Steroid Delta(5)->Delta(4)-isomerase (EC 5.3.3.1)","missense_variantMODERATE"]
["G01222","NC_000962",3829770,"T","C",{"v":971426,"d":"971,426"},"30.0","1.00","Synon","cca","ccG","141A>G","Pro47Pro",null,"fig|83332.12.peg.3807","Rv3410c","guaB3","Inosine-5'-monophosphate dehydrogenase, catalytic domain (EC 1.1.1.205)","Cholesterol oxidase (EC 1.1.3.6) @ Steroid Delta(5)->Delta(4)-isomerase (EC 5.3.3.1)","Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain","synonymous_variantLOW"]
["MP1","NC_000962",3829770,"T","C","7391.43","216.0","1.00","Synon","cca","ccG","141A>G","Pro47Pro",null,"fig|83332.12.peg.3807","Rv3410c","guaB3","Inosine-5'-monophosphate dehydrogenase, catalytic domain (EC 1.1.1.205)","Cholesterol oxidase (EC 1.1.3.6) @ Steroid Delta(5)->Delta(4)-isomerase (EC 5.3.3.1)","Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain","synonymous_variantLOW"]
[64,"NC_000962",3836310,"G","A","2672.48","80.0","1.00","Synon","gac","gaT","582C>T","AsMP194Asp",null,"fig|83332.12.peg.3814","Rv3417c","groEL","Heat shock protein 60 kDa family chaperone GroEL","Sporulation regulatory protein WhiD","Heat shock protein 10 kDa family chaperone GroES","synonymous_variantMODERATE"]
[7739,"NC_000962",3838871,"A","G","3261.95","105.0","1.00","Synon","gct","gcC","192T>C","Ala64Ala",null,"fig|83332.12.peg.3817","Rv3420c","rimI","Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128)","N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234)","tRNA threonylcarbamoyladenosine biosynthesis protein TsaB","synonymous_variantLOW"]
[58,"NC_000962",3838871,"A","G","2588.34","79.0","1.00","Synon","gct","gcC","192T>C","Ala64Ala",null,"fig|83332.12.peg.3817","Rv3420c","rimI","Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128)","N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234)","tRNA threonylcarbamoyladenosine biosynthesis protein TsaB","synonymous_variantLOW"]
[64,"NC_000962",3850195,"A","G",{"v":927358,"d":"927,358"},"35.0","0.90",{"$nulls":10},"Mobile element protein","Glutamate decarboxylase (EC 4.1.1.15)","intergenic_regionMODERATE"]
["G01498","NC_000962",3859893,"C","T","1928.23","65.0","0.98","Synon","gag","gaA","84G>A","Glu28Glu",null,"fig|83332.12.peg.3844","Rv3440c",null,"hypothetical protein","Conserved alanine and proline rich protein","Phosphoglucosamine mutase (EC 5.4.2.10)","synonymous_variantLOW"]
["G01491","NC_000962",3860838,"G","A","5213.41","173.0","0.99","Nonsyn","gcc","gTc","533C>T","Ala178Val",null,"fig|83332.12.peg.3845","Rv3441c","mrsA","Phosphoglucosamine mutase (EC 5.4.2.10)","hypothetical protein","SSU ribosomal protein S9p (S16e)","missense_variantMODERATE"]
[54,"NC_000962",3860838,"G","A",{"v":276727,"d":"276,727"},"10.0","1.00","Nonsyn","gcc","gTc","533C>T","Ala178Val",null,"fig|83332.12.peg.3845","Rv3441c","mrsA","Phosphoglucosamine mutase (EC 5.4.2.10)","hypothetical protein","SSU ribosomal protein S9p (S16e)","missense_variantMODIFIER"]
["MP2","NC_000962",3862472,"GAA","GA","4486.85","141.0","0.98","Deletion",{"$nulls":9},"LSU ribosomal protein L13p (L13Ae)","ESAT-6-like protein EsxT","intergenic_regionMODIFIER"]
[58,"NC_000962",3864995,"T","C","3464.75","105.0","0.97","Nonsyn","agc","Ggc","3049A>G","Ser1017Gly",null,"fig|83332.12.peg.3851","Rv3447c",null,"FtsK/SpoIIIE family protein EccC4, component of Type VII secretion system ESX-4","Membrane protein Rv3446c, component of Type VII secretion system ESX-4","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",3866374,"G","A","2677.66","91.0","0.97","Nonsyn","ccc","cTc","1670C>T","Pro557Leu",null,"fig|83332.12.peg.3851","Rv3447c",null,"FtsK/SpoIIIE family protein EccC4, component of Type VII secretion system ESX-4","Membrane protein Rv3446c, component of Type VII secretion system ESX-4","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",3866374,"G","A","3433.82","110.0","1.00","Nonsyn","ccc","cTc","1670C>T","Pro557Leu",null,"fig|83332.12.peg.3851","Rv3447c",null,"FtsK/SpoIIIE family protein EccC4, component of Type VII secretion system ESX-4","Membrane protein Rv3446c, component of Type VII secretion system ESX-4","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",3868175,"G","A","2032.05","69.0","0.91","Nonsyn","cgc","cAc","116G>A","Arg39His",null,"fig|83332.12.peg.3852",null,null,"hypothetical protein","FtsK/SpoIIIE family protein EccC4, component of Type VII secretion system ESX-4","Integral membrane protein EccD4, component of Type VII secretion system ESX-4","missense_variantMODERATE"]
["G01491","NC_000962",3870225,"C","T","7059.93","223.0","1.00","Synon","atc","atT","480C>T","Ile160Ile",null,"fig|83332.12.peg.3854","Rv3449","mycP4","Serine protease mycosin MycP4, component of Type VII secretion system ESX-4","Integral membrane protein EccD4, component of Type VII secretion system ESX-4","Membrane protein EccB4, component of Type VII secretion system ESX-4","synonymous_variantLOW"]
[54,"NC_000962",3870225,"C","T","8489.35","258.0","1.00","Synon","atc","atT","480C>T","Ile160Ile",null,"fig|83332.12.peg.3854","Rv3449","mycP4","Serine protease mycosin MycP4, component of Type VII secretion system ESX-4","Integral membrane protein EccD4, component of Type VII secretion system ESX-4","Membrane protein EccB4, component of Type VII secretion system ESX-4","synonymous_variantLOW"]
["G01491","NC_000962",3874722,"ATT","AT","3824.87","124.0","0.94","Deletion","att","AT","189delT","Ile63fs","yes","fig|83332.12.peg.3858","Rv3453",null,"Putative transmembrane protein","Probable cutinase Cut4 (EC 3.1.1.74)","putative membrane protein","frameshift_variantHIGH"]
[64,"NC_000962",3874722,"ATT","AT","366.61","20.0","0.71","Deletion","att","AT","189delT","Ile63fs","yes","fig|83332.12.peg.3858","Rv3453",null,"Putative transmembrane protein","Probable cutinase Cut4 (EC 3.1.1.74)","putative membrane protein","frameshift_variantHIGH"]
[7739,"NC_000962",3875380,"C","T","4019.53","123.0","1.00","Synon","ctg","Ttg","622C>T","Leu208Leu",null,"fig|83332.12.peg.3859","Rv3454",null,"putative membrane protein","Putative transmembrane protein","tRNA pseudouridine(38-40) synthase (EC 5.4.99.12)","synonymous_variantLOW"]
["G01498","NC_000962",3875490,"G","A","2055.23","67.0","1.00","Synon","gtg","gtA","732G>A","Val244Val",null,"fig|83332.12.peg.3859","Rv3454",null,"putative membrane protein","Putative transmembrane protein","tRNA pseudouridine(38-40) synthase (EC 5.4.99.12)","synonymous_variantLOW"]
[7011,"NC_000962",3875490,"G","A","2745.06","95.0","1.00","Synon","gtg","gtA","732G>A","Val244Val",null,"fig|83332.12.peg.3859","Rv3454",null,"putative membrane protein","Putative transmembrane protein","tRNA pseudouridine(38-40) synthase (EC 5.4.99.12)","synonymous_variantLOW"]
["G01492","NC_000962",3877421,"A","G","9961.61","320.0","0.99","Synon","cct","ccC","12T>C","Pro4Pro",null,"fig|83332.12.peg.3861","Rv3456c","rplQ","LSU ribosomal protein L17p","tRNA pseudouridine(38-40) synthase (EC 5.4.99.12)","DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)","synonymous_variantLOW"]
["G01222","NC_000962",3879288,"C","A",{"v":753381,"d":"753,381"},"25.0","0.96","Nonsyn","aag","aaT","405G>T","Lys135Asn",null,"fig|83332.12.peg.3864","Rv3459c","rpsK","SSU ribosomal protein S11p (S14e)","SSU ribosomal protein S4p (S9e) @ SSU ribosomal protein S4p (S9e), zinc-independent","SSU ribosomal protein S13p (S18e)","missense_variantMODERATE"]
["MP1","NC_000962",3879288,"C","A","5720.52","182.0","0.98","Nonsyn","aag","aaT","405G>T","Lys135Asn",null,"fig|83332.12.peg.3864","Rv3459c","rpsK","SSU ribosomal protein S11p (S14e)","SSU ribosomal protein S4p (S9e) @ SSU ribosomal protein S4p (S9e), zinc-independent","SSU ribosomal protein S13p (S18e)","missense_variantMODERATE"]
[64,"NC_000962",3882987,"G","C","2515.84","76.0","1.00","Nonsyn","gtg","Ctg","154G>C","Val52Leu",null,"fig|83332.12.peg.3870","Rv3465","rmlC","dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)","dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",3884906,"A","G","1469.82","62.0","1.00","Nonsyn","aaa","Gaa","949A>G","Lys317Glu",null,"fig|83332.12.peg.3872","Rv3467",null,"13E12 repeat family protein","hypothetical protein","UDP-glucose 4-epimerase (EC 5.1.3.2)","missense_variantMODERATE"]
["G01498","NC_000962",3885886,"T","C","2008.22","67.0","1.00","Nonsyn","atc","Gtc","184A>G","Ile62Val",null,"fig|83332.12.peg.3873","Rv3468c",null,"UDP-glucose 4-epimerase (EC 5.1.3.2)","13E12 repeat family protein","4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)","missense_variantLOW"]
["MP2","NC_000962",3885886,"T","C","7287.79","214.0","1.00","Nonsyn","atc","Gtc","184A>G","Ile62Val",null,"fig|83332.12.peg.3873","Rv3468c",null,"UDP-glucose 4-epimerase (EC 5.1.3.2)","13E12 repeat family protein","4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)","missense_variantLOW"]
["G01498","NC_000962",3888751,"C","T","1765.15","66.0","0.93","Nonsyn","gtc","Atc","52G>A","Val18Ile",null,"fig|83332.12.peg.3875","Rv3470c","ilvB2","Acetohydroxy acid synthase","4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)","Mannose-6-phosphate isomerase","missense_variantMODERATE"]
["G01491","NC_000962",3892671,"A","G","4314.17","135.0","1.00","Synon","gtt","gtC","1098T>C","Val366Val",null,"fig|83332.12.peg.3881","Rv3476c","kgtP","Probable dicarboxylic acid transport integral membrane protein KgtP","Mobile element protein","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",3892671,"A","G","15456.9","477.0","0.99","Synon","gtt","gtC","1098T>C","Val366Val",null,"fig|83332.12.peg.3881","Rv3476c","kgtP","Probable dicarboxylic acid transport integral membrane protein KgtP","Mobile element protein","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",3893290,"G","A","5331.89","156.0","1.00","Nonsyn","gcg","gTg","479C>T","Ala160Val",null,"fig|83332.12.peg.3881","Rv3476c","kgtP","Probable dicarboxylic acid transport integral membrane protein KgtP","Mobile element protein","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",3893480,"G","A","1471.83","48.0","0.98","Nonsyn","ctt","Ttt","289C>T","Leu97Phe",null,"fig|83332.12.peg.3881","Rv3476c","kgtP","Probable dicarboxylic acid transport integral membrane protein KgtP","Mobile element protein","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",3895269,"G","C",{"v":664679,"d":"664,679"},"69.0","1.00","Nonsyn","gaa","Caa","844G>C","Glu282Gln",null,"fig|83332.12.peg.3884","Rv3478","PPE60","PPE family protein, SVP subgroup ","PE family protein ","patatin-related protein","missense_variantMODERATE"]
["G01492","NC_000962",3895727,"C","A","11091.2","353.0","1.00","Nonsyn","ctg","Atg","91C>A","Leu31Met",null,"fig|83332.12.peg.3885","Rv3479",null,"patatin-related protein","PPE family protein, SVP subgroup ","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","missense_variantMODERATE"]
["G01222","NC_000962",3896340,"T","G",{"v":954395,"d":"954,395"},"31.0","0.97","Nonsyn","ctc","cGc","704T>G","Leu235Arg",null,"fig|83332.12.peg.3885","Rv3479",null,"patatin-related protein","PPE family protein, SVP subgroup ","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","missense_variantLOW"]
["G01491","NC_000962",3896340,"T","G","4460.29","138.0","1.00","Nonsyn","ctc","cGc","704T>G","Leu235Arg",null,"fig|83332.12.peg.3885","Rv3479",null,"patatin-related protein","PPE family protein, SVP subgroup ","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","missense_variantLOW"]
[54,"NC_000962",3896340,"T","G","2652.98","88.0","0.93","Nonsyn","ctc","cGc","704T>G","Leu235Arg",null,"fig|83332.12.peg.3885","Rv3479",null,"patatin-related protein","PPE family protein, SVP subgroup ","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","missense_variantMODIFIER"]
["G01492","NC_000962",3909235,"G","C","10989.6","351.0","0.99","Nonsyn","gtg","Ctg","934G>C","Val312Leu",null,"fig|83332.12.peg.3897","Rv3490","otsA","Trehalose-6-phosphate synthase (EC 2.4.1.15)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",3909235,"G","C","1252.06","38.0","0.97","Nonsyn","gtg","Ctg","934G>C","Val312Leu",null,"fig|83332.12.peg.3897","Rv3490","otsA","Trehalose-6-phosphate synthase (EC 2.4.1.15)","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",3917241,"G","A","2709.77","93.0","0.97","Nonsyn","acg","aTg","758C>T","Thr253Met",null,"fig|83332.12.peg.3905","Rv3498c","mce4B","MCE-family protein MceB","MCE-family protein MceC","MCE-family protein MceA","missense_variantMODERATE"]
["G01498","NC_000962",3919439,"G","A","1605.73","55.0","1.00","Synon","ccc","ccT","624C>T","Pro208Pro",null,"fig|83332.12.peg.3907","Rv3500c","yrbE4B","Conserved hypothetical integral membrane protein YrbEb","MCE-family protein MceA","Conserved hypothetical integral membrane protein YrbEa","synonymous_variantLOW"]
["G01491","NC_000962",3922836,"T","C","2882.97","92.0","1.00","Synon","gat","gaC","366T>C","AsMP122Asp",null,"fig|83332.12.peg.3911","Rv3504","fadE26","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE26","Ferredoxin","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE27","synonymous_variantMODERATE"]
[54,"NC_000962",3922836,"T","C","3669.87","122.0","0.92","Synon","gat","gaC","366T>C","AsMP122Asp",null,"fig|83332.12.peg.3911","Rv3504","fadE26","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE26","Ferredoxin","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE27","synonymous_variantMODERATE"]
["G01222","NC_000962",3930381,"C","A",{"v":250819,"d":"250,819"},"8.0","1.00","Synon","ggc","ggA","3813C>A","Gly1271Gly",null,"fig|83332.12.peg.3914","Rv3507","PE_PGRS53","PE_PGRS family protein ","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD17","PE_PGRS family protein ","synonymous_variantMODERATE"]
["MP1","NC_000962",3930381,"C","A",{"v":376755,"d":"376,755"},"12.0","1.00","Synon","ggc","ggA","3813C>A","Gly1271Gly",null,"fig|83332.12.peg.3914","Rv3507","PE_PGRS53","PE_PGRS family protein ","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD17","PE_PGRS family protein ","synonymous_variantMODERATE"]
[64,"NC_000962",3952800,"G","A","2070.69","69.0","0.99","Nonsyn","ggc","gAc","275G>A","Gly92Asp",null,"fig|83332.12.peg.3926","Rv3516","echA19","Enoyl-CoA hydratase (EC 4.2.1.17)","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD19","hypothetical protein","missense_variantLOW"]
[7739,"NC_000962",3952929,"A","C","2508.01","83.0","0.98","Nonsyn","gaa","gCa","404A>C","Glu135Ala",null,"fig|83332.12.peg.3926","Rv3516","echA19","Enoyl-CoA hydratase (EC 4.2.1.17)","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD19","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",3953176,"G","A","3156.55","104.0","0.98","Synon","cag","caA","651G>A","Gln217Gln",null,"fig|83332.12.peg.3926","Rv3516","echA19","Enoyl-CoA hydratase (EC 4.2.1.17)","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD19","hypothetical protein","synonymous_variantHIGH"]
["MP1","NC_000962",3953176,"G","A","8891.68","259.0","1.00","Synon","cag","caA","651G>A","Gln217Gln",null,"fig|83332.12.peg.3926","Rv3516","echA19","Enoyl-CoA hydratase (EC 4.2.1.17)","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD19","hypothetical protein","synonymous_variantHIGH"]
["G01222","NC_000962",3959418,"C","T",{"v":821282,"d":"821,282"},"26.0","1.00","Nonsyn","acc","aTc","971C>T","Thr324Ile",null,"fig|83332.12.peg.3932","Rv3522","ltp4","Lipid transfer protein or keto acyl-CoA thiolase Ltp4","conserved protein associated with acetyl-CoA C-acyltransferase / conserved protein associated with acetyl-CoA C-acyltransferase","lipid carrier protein or keto acyl-CoA thiolase Ltp3","missense_variantMODIFIER"]
["MP1","NC_000962",3959418,"C","T","5821.85","184.0","0.99","Nonsyn","acc","aTc","971C>T","Thr324Ile",null,"fig|83332.12.peg.3932","Rv3522","ltp4","Lipid transfer protein or keto acyl-CoA thiolase Ltp4","conserved protein associated with acetyl-CoA C-acyltransferase / conserved protein associated with acetyl-CoA C-acyltransferase","lipid carrier protein or keto acyl-CoA thiolase Ltp3","missense_variantMODERATE"]
[54,"NC_000962",3959418,"C","T","3052.99","98.0","1.00","Nonsyn","acc","aTc","971C>T","Thr324Ile",null,"fig|83332.12.peg.3932","Rv3522","ltp4","Lipid transfer protein or keto acyl-CoA thiolase Ltp4","conserved protein associated with acetyl-CoA C-acyltransferase / conserved protein associated with acetyl-CoA C-acyltransferase","lipid carrier protein or keto acyl-CoA thiolase Ltp3","missense_variantMODERATE"]
["MP2","NC_000962",3964715,"G","A","6752.55","196.0","1.00","Nonsyn","cac","Tac","298C>T","His100Tyr",null,"fig|83332.12.peg.3940","Rv3528c",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODIFIER"]
[58,"NC_000962",3984321,"G","A","4614.79","151.0","0.99","Synon","cac","caT","1077C>T","His359His",null,"fig|83332.12.peg.3959","Rv3545c","cyMP125","Steroid C27-monooxygenase (EC 1.14.13.141)","Acyl-CoA dehydrogenase (EC 1.3.8.-), Mycobacterial subgroup FadE28","3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Probable acetyl-CoA acetyltransferase FadA5 (EC 2.3.1.9)","synonymous_variantLOW"]
[7011,"NC_000962",3987111,"C","G","3895.0","121.0","0.99","Nonsyn","ctc","Gtc","268C>G","Leu90Val",null,"fig|83332.12.peg.3961","Rv3547",null,"Putative uncharacterized protein BCG_3611","3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Probable acetyl-CoA acetyltransferase FadA5 (EC 2.3.1.9)","Short-chain type dehydrogenase/reductase","missense_variantMODERATE"]
["G01492","NC_000962",3987344,"C","G","9127.61","302.0","0.96",{"$nulls":10},"Putative uncharacterized protein BCG_3611","Short-chain type dehydrogenase/reductase","intergenic_regionMODIFIER"]
["G01222","NC_000962",3987939,"C","T","1336.5","44.0","1.00","Nonsyn","gtc","Atc","358G>A","Val120Ile",null,"fig|83332.12.peg.3962","Rv3548c",null,"Short-chain type dehydrogenase/reductase","Putative uncharacterized protein BCG_3611","Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)","missense_variantMODERATE"]
["MP1","NC_000962",3987939,"C","T","7459.71","222.0","1.00","Nonsyn","gtc","Atc","358G>A","Val120Ile",null,"fig|83332.12.peg.3962","Rv3548c",null,"Short-chain type dehydrogenase/reductase","Putative uncharacterized protein BCG_3611","Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)","missense_variantMODERATE"]
[64,"NC_000962",3988401,"G","A","3064.64","102.0","0.98","Nonsyn","tca","tTa","698C>T","Ser233Leu",null,"fig|83332.12.peg.3963","Rv3549c",null,"Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)","Short-chain type dehydrogenase/reductase","Probable enoyl-CoA hydratase EchA20 (EC 4.2.1.17)","missense_variantMODERATE"]
["MP1","NC_000962",3988401,"G","A","6109.32","184.0","1.00","Nonsyn","tca","tTa","698C>T","Ser233Leu",null,"fig|83332.12.peg.3963","Rv3549c",null,"Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)","Short-chain type dehydrogenase/reductase","Probable enoyl-CoA hydratase EchA20 (EC 4.2.1.17)","missense_variantMODERATE"]
[64,"NC_000962",3989914,"G","T","2692.7","84.0","0.99","Nonsyn","gct","Tct","19G>T","Ala7Ser",null,"fig|83332.12.peg.3965","Rv3551",null,"CoA-transferase subunit alpha, IpdA","Probable enoyl-CoA hydratase EchA20 (EC 4.2.1.17)","CoA-transferase subunit beta, IpdB","missense_variantMODERATE"]
[7739,"NC_000962",3993266,"C","T","2415.84","80.0","0.96","Synon","ggc","ggT","528C>T","Gly176Gly",null,"fig|83332.12.peg.3968","Rv3554","fdxB","Possible electron transfer protein FdxB (EC 1.-.-.-)","Monooxygenase IpdC","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",3994898,"A","G","2985.5","98.0","1.00","Nonsyn","tgg","Cgg","808T>C","TrMP270Arg",null,"fig|83332.12.peg.3969","Rv3555c",null,"hypothetical protein","Possible electron transfer protein FdxB (EC 1.-.-.-)","Probable acetyl-CoA acetyltransferase FadA6 (EC 2.3.1.9)","missense_variantMODERATE"]
["G01491","NC_000962",3997420,"G","C","4420.25","142.0","0.96","Nonsyn","gcc","gGc","203C>G","Ala68Gly",null,"fig|83332.12.peg.3971","Rv3557c",null,"Transcriptional factor in putative operon for degradation of branched-chain alkanes, nitroalkanes and may be also cyclic ketones, alkenoic acids","Probable acetyl-CoA acetyltransferase FadA6 (EC 2.3.1.9)","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
[54,"NC_000962",3997420,"G","C","7675.26","247.0","0.97","Nonsyn","gcc","gGc","203C>G","Ala68Gly",null,"fig|83332.12.peg.3971","Rv3557c",null,"Transcriptional factor in putative operon for degradation of branched-chain alkanes, nitroalkanes and may be also cyclic ketones, alkenoic acids","Probable acetyl-CoA acetyltransferase FadA6 (EC 2.3.1.9)","PPE family protein, MPTR subgroup ","missense_variantMODERATE"]
["MP2","NC_000962",3999774,"G","A","5201.03","157.0","0.98","Nonsyn","gcg","gTg","662C>T","Ala221Val",null,"fig|83332.12.peg.3973","Rv3559c",null,"Oxidoreductase, short-chain dehydrogenase/reductase family","PPE family protein, MPTR subgroup ","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE30","missense_variantMODERATE"]
[58,"NC_000962",4005114,"G","C",{"v":519805,"d":"519,805"},"18.0","0.90","Nonsyn","tgg","tCg","818G>C","TrMP273Ser",null,"fig|83332.12.peg.3977","Rv3563","fadE32","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE32","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE31","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE33","missense_variantMODERATE"]
[64,"NC_000962",4005114,"G","C","1292.36","45.0","0.96","Nonsyn","tgg","tCg","818G>C","TrMP273Ser",null,"fig|83332.12.peg.3977","Rv3563","fadE32","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE32","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE31","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE33","missense_variantMODERATE"]
[7739,"NC_000962",4005607,"T","C","2783.43","89.0","1.00","Synon","ttg","Ctg","337T>C","Leu113Leu",null,"fig|83332.12.peg.3978","Rv3564","fadE33","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE33","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE32","Valine--pyruvate aminotransferase (EC 2.6.1.66)","synonymous_variantLOW"]
["G01498","NC_000962",4008747,"A","G","2947.58","96.0","1.00","Nonsyn","atc","aCc","536T>C","Ile179Thr",null,"fig|83332.12.peg.3983","Rv3567c",null,"Flavin-dependent monooxygenase, reductase subunit HsaB (EC 1.5.1.36)","hypothetical protein","Iron-dependent extradiol dioxygenase (EC 1.13.11.25)","missense_variantLOW"]
["G01498","NC_000962",4012219,"T","C","2198.88","68.0","1.00","Nonsyn","aat","Gat","52A>G","Asn18Asp",null,"fig|83332.12.peg.3986","Rv3570c",null,"Flavin-dependent monooxygenase, oxygenase subunit HsaA (EC 1.14.14.12)","4,5-9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase (EC 3.7.1.17)","Putative oxidoreductase","missense_variantMODERATE"]
["G01222","NC_000962",4018525,"C","T",{"v":908144,"d":"908,144"},"29.0","1.00","Synon","agc","agT","168C>T","Ser56Ser",null,"fig|83332.12.peg.3993","Rv3576","lppH","Serine/threonine protein kinase","Transcriptional regulator, LacI family","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",4018525,"C","T","8906.15","265.0","0.99","Synon","agc","agT","168C>T","Ser56Ser",null,"fig|83332.12.peg.3993","Rv3576","lppH","Serine/threonine protein kinase","Transcriptional regulator, LacI family","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",4021489,"T","G","1166.95","45.0","0.80","Nonsyn","gag","gCg","905A>C","Glu302Ala",null,"fig|83332.12.peg.3997","Rv3579c",null,"23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185)","putative anion permease","Cysteinyl-tRNA synthetase (EC 6.1.1.16)","missense_variantLOW"]
[7739,"NC_000962",4024273,"T","C","2501.92","86.0","1.00",{"$nulls":10},"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)","2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)","intergenic_regionMODIFIER"]
[58,"NC_000962",4024273,"T","C","1313.48","47.0","0.89",{"$nulls":10},"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)","2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)","intergenic_regionMODIFIER"]
[7011,"NC_000962",4026899,"G","A","3602.91","110.0","1.00","Synon","cag","caA","309G>A","Gln103Gln",null,"fig|83332.12.peg.4003","Rv3585","radA","DNA repair protein RadA","Lipoprotein LpqE","DNA integrity scanning protein DisA","synonymous_variantLOW"]
["G01492","NC_000962",4028029,"G","C","13299.5","424.0","0.98","Nonsyn","gag","Cag","130G>C","Glu44Gln",null,"fig|83332.12.peg.4004","Rv3586",null,"DNA integrity scanning protein DisA","DNA repair protein RadA","FIG00820636: hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",4028752,"A","G",{"v":758507,"d":"758,507"},"24.0","1.00","Nonsyn","acg","Gcg","853A>G","Thr285Ala",null,"fig|83332.12.peg.4004","Rv3586",null,"DNA integrity scanning protein DisA","DNA repair protein RadA","FIG00820636: hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",4028752,"A","G","7126.8","212.0","1.00","Nonsyn","acg","Gcg","853A>G","Thr285Ala",null,"fig|83332.12.peg.4004","Rv3586",null,"DNA integrity scanning protein DisA","DNA repair protein RadA","FIG00820636: hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",4032948,"C","T","3453.85","116.0","0.99","Nonsyn","ggg","Agg","211G>A","Gly71Arg",null,"fig|83332.12.peg.4008","Rv3590c","PE_PGRS58","PE_PGRS family protein ","A/G-specific adenine glycosylase (EC 3.2.2.-)","Hydrolase, alpha/beta fold family","missense_variantMODERATE"]
[54,"NC_000962",4032948,"C","T","5383.25","181.0","1.00","Nonsyn","ggg","Agg","211G>A","Gly71Arg",null,"fig|83332.12.peg.4008","Rv3590c","PE_PGRS58","PE_PGRS family protein ","A/G-specific adenine glycosylase (EC 3.2.2.-)","Hydrolase, alpha/beta fold family","missense_variantMODERATE"]
[7011,"NC_000962",4034827,"C","T","2771.36","105.0","0.99","Nonsyn","gcg","gTg","434C>T","Ala145Val",null,"fig|83332.12.peg.4011","Rv3593","lpqF","Lipoprotein LpqF","Heme-degrading protein MhuD (no EC)","Phage endolysin","missense_variantMODERATE"]
[7739,"NC_000962",4034827,"C","T","2256.94","84.0","0.99","Nonsyn","gcg","gTg","434C>T","Ala145Val",null,"fig|83332.12.peg.4011","Rv3593","lpqF","Lipoprotein LpqF","Heme-degrading protein MhuD (no EC)","Phage endolysin","missense_variantMODERATE"]
["G01498","NC_000962",4041838,"T","C","2553.73","96.0","0.86","Nonsyn","cac","cGc","1103A>G","His368Arg",null,"fig|83332.12.peg.4016","Rv3598c","lysS","Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)","Histone protein Lsr2","Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)","missense_variantMODERATE"]
["G01491","NC_000962",4042946,"G","A","4638.17","142.0","0.99",{"$nulls":10},"Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)","Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)","intergenic_regionMODIFIER"]
[54,"NC_000962",4042946,"G","A",{"v":714899,"d":"714,899"},"24.0","1.00",{"$nulls":10},"Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)","Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)","intergenic_regionMODIFIER"]
["MP2","NC_000962",4046218,"G","A","6363.74","188.0","1.00",{"$nulls":10},"Ketopantoate reductase PanG (EC 1.1.1.169)","FIG00819990: Possible membrane protein","intergenic_regionMODERATE"]
[58,"NC_000962",4047039,"A","C",{"v":711561,"d":"711,561"},"24.0","1.00","Nonsyn","gtg","gGg","401T>G","Val134Gly",null,"fig|83332.12.peg.4021","Rv3604c",null,"FIG00819990: Possible membrane protein","Ketopantoate reductase PanG (EC 1.1.1.169)","FIG027937: secreted protein","missense_variantMODERATE"]
[7011,"NC_000962",4047242,"G","A","3543.48","115.0","1.00","Synon","gac","gaT","198C>T","Asp66Asp",null,"fig|83332.12.peg.4021","Rv3604c",null,"FIG00819990: Possible membrane protein","Ketopantoate reductase PanG (EC 1.1.1.169)","FIG027937: secreted protein","synonymous_variantLOW"]
["G01492","NC_000962",4054637,"A","G","10238.4","328.0","0.99","Synon","ggt","ggC","84T>C","Gly28Gly",null,"fig|83332.12.peg.4030","Rv3614c",null,"Protein EspD, component of Type VII secretion system ESX-1","Hypothetical protein Rv3612c, component of Type VII secretion system ESX-1","Secreted protein EspC, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
["G01498","NC_000962",4054637,"A","G","2136.3","70.0","0.99","Synon","ggt","ggC","84T>C","Gly28Gly",null,"fig|83332.12.peg.4030","Rv3614c",null,"Protein EspD, component of Type VII secretion system ESX-1","Hypothetical protein Rv3612c, component of Type VII secretion system ESX-1","Secreted protein EspC, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
[7011,"NC_000962",4055801,"G","A","3986.63","128.0","1.00","Nonsyn","acc","aTc","575C>T","Thr192Ile",null,"fig|83332.12.peg.4032","Rv3616c",null,"Secreted protein EspA, component of Type VII secretion system ESX-1","Secreted protein EspC, component of Type VII secretion system ESX-1","Epoxide hydrolase (EC 3.3.2.9)","missense_variantMODERATE"]
["G01222","NC_000962",4056416,"C","A","1488.21","48.0","1.00",{"$nulls":10},"Secreted protein EspA, component of Type VII secretion system ESX-1","Epoxide hydrolase (EC 3.3.2.9)","intergenic_regionMODIFIER"]
["MP1","NC_000962",4056416,"C","A","9988.89","296.0","1.00",{"$nulls":10},"Secreted protein EspA, component of Type VII secretion system ESX-1","Epoxide hydrolase (EC 3.3.2.9)","intergenic_regionMODIFIER"]
[64,"NC_000962",4067044,"G","A","4473.23","151.0","0.95","Nonsyn","gcc","gTc","209C>T","Ala70Val",null,"fig|83332.12.peg.4043","Rv3627c",null,"D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","hypothetical protein","Inorganic pyrophosphatase (EC 3.6.1.1)","missense_variantMODERATE"]
[7739,"NC_000962",4067152,"G","A","2337.01","77.0","1.00","Nonsyn","gcg","gTg","101C>T","Ala34Val",null,"fig|83332.12.peg.4043","Rv3627c",null,"D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","hypothetical protein","Inorganic pyrophosphatase (EC 3.6.1.1)","missense_variantMODERATE"]
["G01498","NC_000962",4068368,"C","T","2140.79","72.0","0.92","Synon","ccg","ccA","687G>A","Pro229Pro",null,"fig|83332.12.peg.4045","Rv3629c",null,"putative membrane protein","Inorganic pyrophosphatase (EC 3.6.1.1)","putative membrane protein","synonymous_variantLOW"]
["G01491","NC_000962",4068804,"A","C","3308.55","112.0","0.93","Nonsyn","ctg","cGg","251T>G","Leu84Arg",null,"fig|83332.12.peg.4045","Rv3629c",null,"putative membrane protein","Inorganic pyrophosphatase (EC 3.6.1.1)","putative membrane protein","missense_variantMODERATE"]
["G01492","NC_000962",4068804,"A","C","7589.99","254.0","0.95","Nonsyn","ctg","cGg","251T>G","Leu84Arg",null,"fig|83332.12.peg.4045","Rv3629c",null,"putative membrane protein","Inorganic pyrophosphatase (EC 3.6.1.1)","putative membrane protein","missense_variantMODERATE"]
["G01222","NC_000962",4069068,"GAAAAAC","GAAAAC",{"v":568788,"d":"568,788"},"21.0","1.00","Deletion",{"$nulls":9},"putative membrane protein","putative membrane protein","intergenic_regionMODERATE"]
["MP1","NC_000962",4069068,"GAAAAAC","GAAAAC","5883.35","173.0","0.92","Deletion",{"$nulls":9},"putative membrane protein","putative membrane protein","intergenic_regionMODERATE"]
[64,"NC_000962",4070961,"G","A","3502.87","109.0","1.00","Nonsyn","gcg","Acg","436G>A","Ala146Thr",null,"fig|83332.12.peg.4047","Rv3631",null,"Polyprenyl-phospho-N-acetylgalactosaminyl synthase PpgS","putative membrane protein","Membrane protein Rv3632, enhances catalytic activity of PpgS","missense_variantMODERATE"]
["MP1","NC_000962",4075152,"C","T","6927.52","203.0","1.00","Nonsyn","ccg","Tcg","1504C>T","Pro502Ser",null,"fig|83332.12.peg.4051","Rv3635",null,"Putative transmembrane protein","UDP-glucose 4-epimerase (EC 5.1.3.2)","hypothetical protein","missense_variantLOW"]
[7011,"NC_000962",4078292,"T","G","2978.64","95.0","0.99","Nonsyn","aaa","aaC","159A>C","Lys53Asn",null,"fig|83332.12.peg.4057","Rv3639c",null,"hypothetical protein","Mobile element protein","Mobile element protein","missense_variantMODERATE"]
["G01492","NC_000962",4078863,"C","T","8762.05","292.0","0.98","Nonsyn","ggg","gAg","926G>A","Gly309Glu",null,"fig|83332.12.peg.4058","Rv3640c",null,"Mobile element protein","hypothetical protein","Fic domain protein, Rv3641c type","missense_variantMODERATE"]
["G01222","NC_000962",4087670,"C","T","1174.9","37.0","1.00","Synon","gtg","gtA","519G>A","Val173Val",null,"fig|83332.12.peg.4066","Rv3647c",null,"hypothetical protein","DNA topoisomerase I (EC 5.99.1.2)","Cold shock protein of CSP family","synonymous_variantLOW"]
["G01491","NC_000962",4087670,"C","T","6913.17","218.0","1.00","Synon","gtg","gtA","519G>A","Val173Val",null,"fig|83332.12.peg.4066","Rv3647c",null,"hypothetical protein","DNA topoisomerase I (EC 5.99.1.2)","Cold shock protein of CSP family","synonymous_variantLOW"]
[54,"NC_000962",4087670,"C","T","2420.8","79.0","0.98","Synon","gtg","gtA","519G>A","Val173Val",null,"fig|83332.12.peg.4066","Rv3647c",null,"hypothetical protein","DNA topoisomerase I (EC 5.99.1.2)","Cold shock protein of CSP family","synonymous_variantLOW"]
["MP2","NC_000962",4089058,"T","C","4256.01","131.0","0.98","Nonsyn","ctc","cCc","278T>C","Leu93Pro",null,"fig|83332.12.peg.4068","Rv3649",null,"ATP-dependent helicase","Cold shock protein of CSP family","PE family protein ","missense_variantLOW"]
[58,"NC_000962",4099060,"G","A","1505.46","48.0","1.00","Nonsyn","ccg","cTg","110C>T","Pro37Leu",null,"fig|83332.12.peg.4080","Rv3660c",null,"Septum site-determining protein MinD @ possible CpaE","Flp pilus assembly protein, ATPase CpaF","Phosphoserine phosphatase (EC 3.1.3.3)","missense_variantMODERATE"]
[7011,"NC_000962",4100975,"T","C","2065.79","70.0","1.00",{"$nulls":10},"Phosphoserine phosphatase (EC 3.1.3.3)","Putative oxidoreductase","intergenic_regionMODERATE"]
["G01492","NC_000962",4105757,"C","T","10455.8","339.0","0.99","Nonsyn","cgg","cAg","1328G>A","Arg443Gln",null,"fig|83332.12.peg.4086","Rv3666c","dppA","Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2)","Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2)","Acetyl-CoA synthetase (EC 6.2.1.1)","missense_variantMODERATE"]
["G01222","NC_000962",4106951,"G","A",{"v":602737,"d":"602,737"},"23.0","0.88","Nonsyn","ccg","cTg","134C>T","Pro45Leu",null,"fig|83332.12.peg.4086","Rv3666c","dppA","Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2)","Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2)","Acetyl-CoA synthetase (EC 6.2.1.1)","missense_variantMODERATE"]
["MP1","NC_000962",4106951,"G","A","7114.29","234.0","0.99","Nonsyn","ccg","cTg","134C>T","Pro45Leu",null,"fig|83332.12.peg.4086","Rv3666c","dppA","Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2)","Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2)","Acetyl-CoA synthetase (EC 6.2.1.1)","missense_variantMODERATE"]
["G01222","NC_000962",4107074,"T","C","1065.55","34.0","1.00","Nonsyn","cag","cGg","11A>G","Gln4Arg",null,"fig|83332.12.peg.4086","Rv3666c","dppA","Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2)","Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2)","Acetyl-CoA synthetase (EC 6.2.1.1)","missense_variantMODERATE"]
["MP1","NC_000962",4107074,"T","C","7689.07","229.0","1.00","Nonsyn","cag","cGg","11A>G","Gln4Arg",null,"fig|83332.12.peg.4086","Rv3666c","dppA","Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2)","Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2)","Acetyl-CoA synthetase (EC 6.2.1.1)","missense_variantMODERATE"]
[64,"NC_000962",4111303,"G","C","2644.09","86.0","1.00","Synon","gtg","gtC","477G>C","Val159Val",null,"fig|83332.12.peg.4089","Rv3669",null,"FIG00820727: hypothetical protein","Protease","Epoxide hydrolase (EC 3.3.2.9)","synonymous_variantLOW"]
[7739,"NC_000962",4112360,"C","G","2715.73","100.0","0.99","Nonsyn","gct","Cct","1156G>C","Ala386Pro",null,"fig|83332.12.peg.4091","Rv3671c",null,"Trypsin-like serine protease with C-terminal PDZ domain","Epoxide hydrolase (EC 3.3.2.9)","Uncharacterized Nudix hydrolase NudL","missense_variantMODERATE"]
["G01498","NC_000962",4112429,"T","C","2528.07","79.0","1.00","Nonsyn","atc","Gtc","1087A>G","Ile363Val",null,"fig|83332.12.peg.4091","Rv3671c",null,"Trypsin-like serine protease with C-terminal PDZ domain","Epoxide hydrolase (EC 3.3.2.9)","Uncharacterized Nudix hydrolase NudL","missense_variantMODERATE"]
["G01491","NC_000962",4116682,"T","C","4709.49","148.0","0.99","Synon","tta","Cta","205T>C","Leu69Leu",null,"fig|83332.12.peg.4096","Rv3676",null,"cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases","putative membrane protein","MBL-fold metallo-hydrolase superfamily","synonymous_variantLOW"]
[54,"NC_000962",4116682,"T","C","4455.82","139.0","1.00","Synon","tta","Cta","205T>C","Leu69Leu",null,"fig|83332.12.peg.4096","Rv3676",null,"cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases","putative membrane protein","MBL-fold metallo-hydrolase superfamily","synonymous_variantLOW"]
["MP2","NC_000962",4117161,"C","A","6999.88","209.0","1.00",{"$nulls":10},"cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases","MBL-fold metallo-hydrolase superfamily","intergenic_regionMODIFIER"]
["MP1","NC_000962",4117161,"C","A","6723.73","203.0","1.00",{"$nulls":10},"cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases","MBL-fold metallo-hydrolase superfamily","intergenic_regionMODIFIER"]
[64,"NC_000962",4117864,"CTCGTCGTCGT","CTCGTCGTCGTCGT","341.75","14.0","0.67","Insertion","gacgacgacgagcac","gACGACGACGACGAGcac","178_179insACG","Asp60_Asp61insAspAsp",null,"fig|83332.12.peg.4097","Rv3677c",null,"MBL-fold metallo-hydrolase superfamily","cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases","RidA/YER057c/UK114 superfamily, group 1","inframe_insertionMODERATE"]
[7739,"NC_000962",4118789,"C","T","3442.18","109.0","0.99",{"$nulls":10},"Uncharacterized protein MSMEG_6192","Anion-transporting ATPase Rv3679","intergenic_regionMODIFIER"]
[7011,"NC_000962",4119246,"T","C","2788.39","90.0","0.98","Synon","gat","gaC","420T>C","AsMP140Asp",null,"fig|83332.12.peg.4100","Rv3679",null,"Anion-transporting ATPase Rv3679","Uncharacterized protein MSMEG_6192","Anion-transporting ATPase Rv3680","synonymous_variantLOW"]
["G01492","NC_000962",4119524,"A","T","8793.82","293.0","0.98","Nonsyn","cag","cTg","698A>T","Gln233Leu",null,"fig|83332.12.peg.4100","Rv3679",null,"Anion-transporting ATPase Rv3679","Uncharacterized protein MSMEG_6192","Anion-transporting ATPase Rv3680","missense_variantMODERATE"]
["G01222","NC_000962",4120983,"A","G","2007.44","94.0","1.00",{"$nulls":10},"Anion-transporting ATPase Rv3680","Transcriptional regulator, WhiB family","intergenic_regionMODIFIER"]
["MP1","NC_000962",4120983,"A","G","7689.07","237.0","1.00",{"$nulls":10},"Anion-transporting ATPase Rv3680","Transcriptional regulator, WhiB family","intergenic_regionMODIFIER"]
[64,"NC_000962",4121675,"C","T","2433.94","75.0","1.00",{"$nulls":10},"Transcriptional regulator, WhiB family","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","intergenic_regionMODIFIER"]
["MP2","NC_000962",4121675,"C","T","9260.48","271.0","1.00",{"$nulls":10},"Transcriptional regulator, WhiB family","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) ","intergenic_regionMODIFIER"]
[58,"NC_000962",4130711,"G","C",{"v":904638,"d":"904,638"},"32.0","1.00","Nonsyn","gtc","Ctc","196G>C","Val66Leu",null,"fig|83332.12.peg.4112","Rv3689",null,"putative membrane protein","hypothetical protein","putative membrane protein","missense_variantMODERATE"]
[7011,"NC_000962",4133256,"G","A","2874.33","95.0","0.99","Nonsyn","ggt","Agt","817G>A","Gly273Ser",null,"fig|83332.12.peg.4114","Rv3691",null,"putative secreted protein","putative membrane protein","FIG022979: MoxR-like ATPases","missense_variantMODERATE"]
["G01492","NC_000962",4134211,"G","A","10206.0","336.0","0.97","Synon","gcg","gcA","543G>A","Ala181Ala",null,"fig|83332.12.peg.4115","Rv3692","moxR2","FIG022979: MoxR-like ATPases","putative secreted protein","putative membrane protein","synonymous_variantLOW"]
["G01222","NC_000962",4138377,"A","G",{"v":787839,"d":"787,839"},"25.0","0.96","Nonsyn","gtg","gCg","1379T>C","Val460Ala",null,"fig|83332.12.peg.4119","Rv3696c","glpK","Glycerol kinase (EC 2.7.1.30)","putative membrane protein","toxin VapC48 @ Toxin 1, PIN domain","missense_variantHIGH"]
[54,"NC_000962",4138377,"A","G",{"v":361456,"d":"361,456"},"14.0","1.00","Nonsyn","gtg","gCg","1379T>C","Val460Ala",null,"fig|83332.12.peg.4119","Rv3696c","glpK","Glycerol kinase (EC 2.7.1.30)","putative membrane protein","toxin VapC48 @ Toxin 1, PIN domain","missense_variantMODERATE"]
["MP2","NC_000962",4140143,"C","T","8246.91","240.0","1.00","Nonsyn","ggg","Agg","100G>A","Gly34Arg",null,"fig|83332.12.peg.4120","Rv3697c",null,"toxin VapC48 @ Toxin 1, PIN domain","Glycerol kinase (EC 2.7.1.30)","antitoxin VapB48 @ Antitoxin to Toxin 1, PIN domain","missense_variantMODERATE"]
[58,"NC_000962",4140694,"A","G",{"v":872584,"d":"872,584"},"27.0","1.00","Nonsyn","atc","Gtc","211A>G","Ile71Val",null,"fig|83332.12.peg.4122","Rv3698",null,"hypothetical protein","antitoxin VapB48 @ Antitoxin to Toxin 1, PIN domain","SAM-dependent methyltransferase","missense_variantMODERATE"]
[64,"NC_000962",4140694,"A","G","1331.6","44.0","0.96","Nonsyn","atc","Gtc","211A>G","Ile71Val",null,"fig|83332.12.peg.4122","Rv3698",null,"hypothetical protein","antitoxin VapB48 @ Antitoxin to Toxin 1, PIN domain","SAM-dependent methyltransferase","missense_variantMODERATE"]
[7739,"NC_000962",4143114,"C","G","2521.57","80.0","1.00","Synon","tcg","tcC","807G>C","Ser269Ser",null,"fig|83332.12.peg.4124","Rv3700c",null,"Pyridoxal-phosphate-dependent protein EgtE (ergothioneine synthase)","SAM-dependent methyltransferase","L-histidine N(alpha)-methyltransferase (EC 2.1.1.44)","synonymous_variantLOW"]
["G01498","NC_000962",4143652,"GTG","GG","1664.77","55.0","0.98","Deletion","ttcacc","ttCCc","268delA","Thr90fs","yes","fig|83332.12.peg.4124","Rv3700c",null,"Pyridoxal-phosphate-dependent protein EgtE (ergothioneine synthase)","SAM-dependent methyltransferase","L-histidine N(alpha)-methyltransferase (EC 2.1.1.44)","frameshift_variantHIGH"]
["G01491","NC_000962",4145737,"A","G","5378.02","173.0","1.00","Synon","tat","taC","1155T>C","Tyr385Tyr",null,"fig|83332.12.peg.4127","Rv3703c",null,"Iron(II)-dependent oxidoreductase EgtB (hercynine sythase)","Amidohydrolase EgtC (hercynylcysteine sulfoxide synthase)","Glutamate--cysteine ligase (EC 6.3.2.2)","synonymous_variantLOW"]
[54,"NC_000962",4145737,"A","G",{"v":987743,"d":"987,743"},"34.0","1.00","Synon","tat","taC","1155T>C","Tyr385Tyr",null,"fig|83332.12.peg.4127","Rv3703c",null,"Iron(II)-dependent oxidoreductase EgtB (hercynine sythase)","Amidohydrolase EgtC (hercynylcysteine sulfoxide synthase)","Glutamate--cysteine ligase (EC 6.3.2.2)","synonymous_variantLOW"]
["MP2","NC_000962",4147070,"A","G","7123.8","208.0","1.00","Synon","ttg","Ctg","1102T>C","Leu368Leu",null,"fig|83332.12.peg.4128","Rv3704c","gshA","Glutamate--cysteine ligase (EC 6.3.2.2)","Iron(II)-dependent oxidoreductase EgtB (hercynine sythase)","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",4149044,"G","C","3013.98","94.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",4150582,"G","T","3493.55","108.0","1.00","Synon","atc","atA","555C>A","Ile185Ile",null,"fig|83332.12.peg.4132","Rv3707c",null,"FIG00821722: hypothetical protein","FIG00820599: hypothetical protein","Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)","synonymous_variantLOW"]
[58,"NC_000962",4150582,"G","T","2413.07","74.0","1.00","Synon","atc","atA","555C>A","Ile185Ile",null,"fig|83332.12.peg.4132","Rv3707c",null,"FIG00821722: hypothetical protein","FIG00820599: hypothetical protein","Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)","synonymous_variantLOW"]
[7011,"NC_000962",4151855,"A","G","2917.0","95.0","1.00","Synon","cct","ccC","342T>C","Pro114Pro",null,"fig|83332.12.peg.4133","Rv3708c","asd","Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)","FIG00821722: hypothetical protein","Aspartokinase (EC 2.7.2.4)","synonymous_variantMODERATE"]
["G01492","NC_000962",4156099,"C","A","10840.6","339.0","0.99","Nonsyn","gtg","Ttg","631G>T","Val211Leu",null,"fig|83332.12.peg.4136","Rv3711c","dnaQ","DNA polymerase III epsilon subunit (EC 2.7.7.7)","2-isopropylmalate synthase (EC 2.3.3.13)","proposed amino acid ligase found clustered with an amidotransferase","missense_variantMODERATE"]
["G01222","NC_000962",4156239,"A","G",{"v":911844,"d":"911,844"},"31.0","1.00","Nonsyn","gtc","gCc","491T>C","Val164Ala",null,"fig|83332.12.peg.4136","Rv3711c","dnaQ","DNA polymerase III epsilon subunit (EC 2.7.7.7)","2-isopropylmalate synthase (EC 2.3.3.13)","proposed amino acid ligase found clustered with an amidotransferase","missense_variantMODERATE"]
["MP1","NC_000962",4156239,"A","G","7483.35","219.0","1.00","Nonsyn","gtc","gCc","491T>C","Val164Ala",null,"fig|83332.12.peg.4136","Rv3711c","dnaQ","DNA polymerase III epsilon subunit (EC 2.7.7.7)","2-isopropylmalate synthase (EC 2.3.3.13)","proposed amino acid ligase found clustered with an amidotransferase","missense_variantMODERATE"]
[64,"NC_000962",4156503,"C","T","6186.25","202.0","0.97","Nonsyn","ggc","gAc","227G>A","Gly76Asp",null,"fig|83332.12.peg.4136","Rv3711c","dnaQ","DNA polymerase III epsilon subunit (EC 2.7.7.7)","2-isopropylmalate synthase (EC 2.3.3.13)","proposed amino acid ligase found clustered with an amidotransferase","missense_variantMODERATE"]
[7739,"NC_000962",4158032,"A","C","3006.18","98.0","1.00","Nonsyn","aag","aCg","1052A>C","Lys351Thr",null,"fig|83332.12.peg.4137","Rv3712",null,"proposed amino acid ligase found clustered with an amidotransferase","DNA polymerase III epsilon subunit (EC 2.7.7.7)","Putative amidotransferase similar to cobyric acid synthase","missense_variantMODERATE"]
["G01498","NC_000962",4158361,"A","G","2130.09","71.0","1.00","Synon","cca","ccG","135A>G","Pro45Pro",null,"fig|83332.12.peg.4138","Rv3713","cobQ2","Putative amidotransferase similar to cobyric acid synthase","proposed amino acid ligase found clustered with an amidotransferase","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",4158361,"A","G","3639.22","112.0","1.00","Synon","cca","ccG","135A>G","Pro45Pro",null,"fig|83332.12.peg.4138","Rv3713","cobQ2","Putative amidotransferase similar to cobyric acid synthase","proposed amino acid ligase found clustered with an amidotransferase","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",4159195,"T","C","11230.4","363.0","0.99","Synon","cca","ccG","612A>G","Pro204Pro",null,"fig|83332.12.peg.4139","Rv3714c",null,"hypothetical protein","Putative amidotransferase similar to cobyric acid synthase","Recombination protein RecR","synonymous_variantLOW"]
["G01222","NC_000962",4162339,"A","G","1599.07","49.0","1.00",{"$nulls":10},"Uncharacterized protein MSMEG_6282","FAD/FMN-containing dehydrogenase Mvan_5531","intergenic_regionMODIFIER"]
["G01222","NC_000962",4163028,"G","A","1029.44","34.0","0.97","Synon","acg","acA","687G>A","Thr229Thr",null,"fig|83332.12.peg.4144","Rv3719",null,"FAD/FMN-containing dehydrogenase Mvan_5531","Uncharacterized protein MSMEG_6282","Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)","synonymous_variantLOW"]
["MP2","NC_000962",4163028,"G","A","8046.86","246.0","0.99","Synon","acg","acA","687G>A","Thr229Thr",null,"fig|83332.12.peg.4144","Rv3719",null,"FAD/FMN-containing dehydrogenase Mvan_5531","Uncharacterized protein MSMEG_6282","Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)","synonymous_variantLOW"]
[58,"NC_000962",4169587,"G","A","1079.27","35.0","1.00","Nonsyn","gtc","Atc","121G>A","Val41Ile",null,"fig|83332.12.peg.4149","Rv3724A","cut5a","Cutinase","putative membrane protein","Cutinase","missense_variantMODERATE"]
[7011,"NC_000962",4169666,"GTT","GT","2280.5","79.0","0.92","Deletion","cgtttc","cGTtc","202delT","Phe68fs","yes","fig|83332.12.peg.4149","Rv3724A","cut5a","Cutinase","putative membrane protein","Cutinase","frameshift_variantHIGH"]
["G01492","NC_000962",4170964,"GG","GAG","9419.88","316.0","0.98","Insertion","ggg","GAGg","752_753insA","Gly251_Ser252fs","yes","fig|83332.12.peg.4151","Rv3725",null,"Oxidoreductase","Cutinase","hypothetical protein","frameshift_variantHIGH"]
["G01498","NC_000962",4170964,"GG","GAG","1603.06","60.0","0.98","Insertion","ggg","GAGg","752_753insA","Gly251_Ser252fs","yes","fig|83332.12.peg.4151","Rv3725",null,"Oxidoreductase","Cutinase","hypothetical protein","frameshift_variantHIGH"]
["G01491","NC_000962",4172173,"A","C","3915.58","126.0","0.99","Nonsyn","aga","agC","753A>C","Arg251Ser",null,"fig|83332.12.peg.4153","Rv3726",null,"2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific (EC 1.1.1.4)","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
[54,"NC_000962",4172173,"A","C",{"v":361533,"d":"361,533"},"11.0","1.00","Nonsyn","aga","agC","753A>C","Arg251Ser",null,"fig|83332.12.peg.4153","Rv3726",null,"2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific (EC 1.1.1.4)","hypothetical protein","Putative oxidoreductase","missense_variantMODERATE"]
["MP2","NC_000962",4179089,"C","T","6707.31","201.0","0.99","Nonsyn","ccg","Tcg","994C>T","Pro332Ser",null,"fig|83332.12.peg.4157","Rv3729",null,"MoaA/NifB/PqqE family radical SAM protein MJ0619","cAMP-binding MFS-type transporter with patatin-like domain Rv3239c family","ATP-dependent DNA ligase (EC 6.5.1.1)","missense_variantMODERATE"]
[58,"NC_000962",4179368,"C","A","2137.05","70.0","0.96","Nonsyn","cgc","Agc","1273C>A","Arg425Ser",null,"fig|83332.12.peg.4157","Rv3729",null,"MoaA/NifB/PqqE family radical SAM protein MJ0619","cAMP-binding MFS-type transporter with patatin-like domain Rv3239c family","ATP-dependent DNA ligase (EC 6.5.1.1)","missense_variantMODERATE"]
[7011,"NC_000962",4182695,"G","A","1939.95","68.0","1.00","Nonsyn","cgc","cAc","938G>A","Arg313His",null,"fig|83332.12.peg.4159","Rv3731","ligC","ATP-dependent DNA ligase (EC 6.5.1.1) LigC","ATP-dependent DNA ligase (EC 6.5.1.1)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",4183602,"C","T",{"v":668972,"d":"668,972"},"22.0","1.00","Synon","gcc","gcT","474C>T","Ala158Ala",null,"fig|83332.12.peg.4161","Rv3732",null,"hypothetical protein","hypothetical protein","MutT/Nudix family protein","synonymous_variantLOW"]
["G01491","NC_000962",4184063,"C","A","3422.78","104.0","1.00","Synon","gcg","gcT","450G>T","Ala150Ala",null,"fig|83332.12.peg.4162","Rv3733c",null,"MutT/Nudix family protein","hypothetical protein","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","synonymous_variantLOW"]
["G01492","NC_000962",4184063,"C","A","6717.45","225.0","0.95","Synon","gcg","gcT","450G>T","Ala150Ala",null,"fig|83332.12.peg.4162","Rv3733c",null,"MutT/Nudix family protein","hypothetical protein","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","synonymous_variantLOW"]
["G01222","NC_000962",4187485,"T","C",{"v":738706,"d":"738,706"},"24.0","1.00","Synon","gct","gcC","846T>C","Ala282Ala",null,"fig|83332.12.peg.4165","Rv3736",null,"Transcriptional regulator, AraC family","Uncharacterized protein AF2422 with adenosine kinase domain","putative membrane protein","synonymous_variantLOW"]
["MP1","NC_000962",4187485,"T","C","8160.5","240.0","1.00","Synon","gct","gcC","846T>C","Ala282Ala",null,"fig|83332.12.peg.4165","Rv3736",null,"Transcriptional regulator, AraC family","Uncharacterized protein AF2422 with adenosine kinase domain","putative membrane protein","synonymous_variantLOW"]
[64,"NC_000962",4187817,"A","G",{"v":546207,"d":"546,207"},"17.0","1.00","Nonsyn","gat","gGt","119A>G","As7011Gly",null,"fig|83332.12.peg.4166","Rv3737",null,"putative membrane protein","Transcriptional regulator, AraC family","PPE family protein ","missense_variantMODERATE"]
[7739,"NC_000962",4188685,"C","T","2835.73","96.0","0.97","Synon","tgc","tgT","987C>T","Cys329Cys",null,"fig|83332.12.peg.4166","Rv3737",null,"putative membrane protein","Transcriptional regulator, AraC family","PPE family protein ","synonymous_variantLOW"]
["G01498","NC_000962",4190285,"T","C","704.85","23.0","1.00","Nonsyn","tag","tGg","233A>G","Ter78Trpext*?",null,"fig|83332.12.peg.4168","Rv3739c","PPE67","PPE family protein, PPW subgroup ","PPE family protein ","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","stop_lostHIGH"]
["G01491","NC_000962",4190301,"G","C","1486.06","48.0","0.98","Nonsyn","cta","Gta","217C>G","Leu73Val",null,"fig|83332.12.peg.4168","Rv3739c","PPE67","PPE family protein, PPW subgroup ","PPE family protein ","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","missense_variantHIGH"]
[54,"NC_000962",4190301,"G","C","5987.93","183.0","1.00","Nonsyn","cta","Gta","217C>G","Leu73Val",null,"fig|83332.12.peg.4168","Rv3739c","PPE67","PPE family protein, PPW subgroup ","PPE family protein ","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","missense_variantHIGH"]
["G01222","NC_000962",4190532,"A","C",{"v":837664,"d":"837,664"},"26.0","1.00",{"$nulls":10},"PPE family protein, PPW subgroup ","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","intergenic_regionMODIFIER"]
[7739,"NC_000962",4190916,"G","A","2607.94","83.0","0.97","Nonsyn","cgc","Tgc","1264C>T","Arg422Cys",null,"fig|83332.12.peg.4169","Rv3740c",null,"Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","PPE family protein, PPW subgroup ","Monooxygenase, flavin-binding family","missense_variantMODERATE"]
["MP2","NC_000962",4190916,"G","A","8383.95","246.0","1.00","Nonsyn","cgc","Tgc","1264C>T","Arg422Cys",null,"fig|83332.12.peg.4169","Rv3740c",null,"Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase","PPE family protein, PPW subgroup ","Monooxygenase, flavin-binding family","missense_variantMODERATE"]
[58,"NC_000962",4195182,"G","A","1233.06","38.0","0.97","Synon","tgc","tgT","102C>T","Cys34Cys",null,"fig|83332.12.peg.4172","Rv3743c","ctpJ","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","Monooxygenase, flavin-binding family","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",4197138,"CTT","CTTT","1833.57","64.0","0.90","Insertion",{"$nulls":9},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",4197189,"A","G","6840.54","225.0","0.98",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",4197555,"G","A",{"v":736741,"d":"736,741"},"24.0","1.00","Nonsyn","ggc","gAc","320G>A","Gly107Asp",null,"fig|83332.12.peg.4177","Rv3748",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",4197555,"G","A","8768.48","262.0","1.00","Nonsyn","ggc","gAc","320G>A","Gly107Asp",null,"fig|83332.12.peg.4177","Rv3748",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",4197555,"G","A",{"v":813004,"d":"813,004"},"27.0","1.00","Nonsyn","ggc","gAc","320G>A","Gly107Asp",null,"fig|83332.12.peg.4177","Rv3748",null,"hypothetical protein","hypothetical protein","hypothetical protein","missense_variantHIGH"]
["MP2","NC_000962",4198611,"CGGGGGT","CGGGGT","6475.21","188.0","0.99","Deletion",{"$nulls":9},"Excisionase","Integrase","intergenic_regionMODIFIER"]
[58,"NC_000962",4199976,"G","A","1166.58","40.0","0.98","Synon","gcc","gcT","267C>T","Ala89Ala",null,"fig|83332.12.peg.4182","Rv3753c",null,"hypothetical protein","tRNA-specific adenosine-34 deaminase (EC 3.5.4.33)","Arogenate dehydrogenase (EC 1.3.1.43)","synonymous_variantLOW"]
[7011,"NC_000962",4200220,"A","G","3235.62","99.0","1.00","Nonsyn","atg","aCg","23T>C","Met8Thr",null,"fig|83332.12.peg.4182","Rv3753c",null,"hypothetical protein","tRNA-specific adenosine-34 deaminase (EC 3.5.4.33)","Arogenate dehydrogenase (EC 1.3.1.43)","missense_variantMODERATE"]
["G01491","NC_000962",4202383,"A","C","4051.04","125.0","1.00","Synon","gtt","gtG","231T>G","Val77Val",null,"fig|83332.12.peg.4185","Rv3756c","proZ","ABC transporter, permease protein (cluster 13, osmolytes)","hypothetical protein","ABC transporter, permease protein (cluster 13, osmolytes)","synonymous_variantLOW"]
["G01491","NC_000962",4204441,"A","G","3222.41","105.0","1.00","Synon","cat","caC","816T>C","His272His",null,"fig|83332.12.peg.4188","Rv3759c","proX","ABC transporter, substrate-binding protein (cluster 13, osmolytes)","ABC transporter, ATP-binding protein (cluster 13, osmolytes)","Uncharacterized integral membrane protein Rv3760","synonymous_variantLOW"]
[54,"NC_000962",4204441,"A","G","5622.08","176.0","0.97","Synon","cat","caC","816T>C","His272His",null,"fig|83332.12.peg.4188","Rv3759c","proX","ABC transporter, substrate-binding protein (cluster 13, osmolytes)","ABC transporter, ATP-binding protein (cluster 13, osmolytes)","Uncharacterized integral membrane protein Rv3760","synonymous_variantLOW"]
["MP2","NC_000962",4205120,"A","G","7219.19","210.0","1.00","Nonsyn","ctg","cCg","137T>C","Leu46Pro",null,"fig|83332.12.peg.4188","Rv3759c","proX","ABC transporter, substrate-binding protein (cluster 13, osmolytes)","ABC transporter, ATP-binding protein (cluster 13, osmolytes)","Uncharacterized integral membrane protein Rv3760","missense_variantMODERATE"]
["MP1","NC_000962",4205120,"A","G","6387.47","188.0","1.00","Nonsyn","ctg","cCg","137T>C","Leu46Pro",null,"fig|83332.12.peg.4188","Rv3759c","proX","ABC transporter, substrate-binding protein (cluster 13, osmolytes)","ABC transporter, ATP-binding protein (cluster 13, osmolytes)","Uncharacterized integral membrane protein Rv3760","missense_variantMODERATE"]
[64,"NC_000962",4210274,"A","G","2811.25","90.0","0.99","Nonsyn","tgt","Cgt","736T>C","Cys246Arg",null,"fig|83332.12.peg.4193","Rv3764c",null,"Two-component system sensor kinase TcrY","19 kDa lipoprotein antigen precursor","Two-component system response regulator TcrX","missense_variantLOW"]
[7739,"NC_000962",4210876,"T","C","2837.46","103.0","1.00","Nonsyn","cac","cGc","134A>G","His45Arg",null,"fig|83332.12.peg.4193","Rv3764c",null,"Two-component system sensor kinase TcrY","19 kDa lipoprotein antigen precursor","Two-component system response regulator TcrX","missense_variantMODERATE"]
["G01498","NC_000962",4212174,"T","C","1798.97","60.0","1.00",{"$nulls":10},"Two-component system response regulator TcrX","hypothetical protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",4214338,"G","T","3242.08","103.0","0.94","Nonsyn","agc","aTc","269G>T","Ser90Ile",null,"fig|83332.12.peg.4197","Rv3768",null,"hypothetical protein","O-methyltransferase","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",4214338,"G","T",{"v":741541,"d":"741,541"},"26.0","0.87","Nonsyn","agc","aTc","269G>T","Ser90Ile",null,"fig|83332.12.peg.4197","Rv3768",null,"hypothetical protein","O-methyltransferase","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",4215001,"C","A","8036.55","233.0","1.00",{"$nulls":10},"hypothetical protein","hypothetical protein","intergenic_regionMODIFIER"]
[58,"NC_000962",4215484,"G","C","1003.48","31.0","1.00","Nonsyn","ccc","Gcc","262C>G","Pro88Ala",null,"fig|83332.12.peg.4199","Rv3770c",null,"hypothetical protein","hypothetical protein","Transposase","missense_variantMODERATE"]
["MP2","NC_000962",4215484,"G","C","8553.79","252.0","1.00","Nonsyn","ccc","Gcc","262C>G","Pro88Ala",null,"fig|83332.12.peg.4199","Rv3770c",null,"hypothetical protein","hypothetical protein","Transposase","missense_variantMODERATE"]
[58,"NC_000962",4216255,"C","G","1886.27","62.0","1.00","Synon","cgg","cgC","15G>C","Arg5Arg",null,"fig|83332.12.peg.4201","Rv3770B",null,"Transposase","Transposase","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",4216347,"T","G","3021.94","94.0","1.00",{"$nulls":10},"Transposase","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",4217456,"G","A","11342.8","370.0","0.99","Nonsyn","cgc","cAc","323G>A","Arg108His",null,"fig|83332.12.peg.4203","Rv3772","hisC2","Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)","tRNA-Ser-GCT","DinB domain","missense_variantMODERATE"]
["G01222","NC_000962",4217557,"A","G",{"v":996632,"d":"996,632"},"35.0","1.00","Nonsyn","acg","Gcg","424A>G","Thr142Ala",null,"fig|83332.12.peg.4203","Rv3772","hisC2","Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)","tRNA-Ser-GCT","DinB domain","missense_variantMODERATE"]
["MP1","NC_000962",4217557,"A","G","8887.36","260.0","1.00","Nonsyn","acg","Gcg","424A>G","Thr142Ala",null,"fig|83332.12.peg.4203","Rv3772","hisC2","Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)","tRNA-Ser-GCT","DinB domain","missense_variantMODERATE"]
[64,"NC_000962",4220876,"T","G",{"v":369239,"d":"369,239"},"13.0","1.00","Nonsyn","tac","Gac","1192T>G","Tyr398Asp",null,"fig|83332.12.peg.4206","Rv3775","lipE","Beta-lactamase class C-like protein Rv3775","Enoyl-CoA hydratase/isomerase Rv3774","tRNA-Ser-TGA","missense_variantMODERATE"]
[7739,"NC_000962",4221490,"C","G","2390.73","81.0","1.00",{"$nulls":10},"Beta-lactamase class C-like protein Rv3775","tRNA-Ser-TGA","intergenic_regionMODIFIER"]
[58,"NC_000962",4221490,"C","G","2375.21","79.0","1.00",{"$nulls":10},"Beta-lactamase class C-like protein Rv3775","tRNA-Ser-TGA","intergenic_regionMODIFIER"]
[7011,"NC_000962",4222073,"A","G","1977.04","66.0","1.00",{"$nulls":10},"Beta-lactamase class C-like protein Rv3775","tRNA-Ser-TGA","intergenic_regionMODIFIER"]
["G01492","NC_000962",4222882,"A","G","10502.7","329.0","0.99","Synon","cta","ctG","189A>G","Leu63Leu",null,"fig|83332.12.peg.4208","Rv3777",null,"Quinone oxidoreductase (EC 1.6.5.5)","tRNA-Ser-TGA","Cysteine desulfurase (EC 2.8.1.7)","synonymous_variantLOW"]
["G01491","NC_000962",4223172,"T","C","5757.62","178.0","1.00","Nonsyn","gtc","gCc","479T>C","Val160Ala",null,"fig|83332.12.peg.4208","Rv3777",null,"Quinone oxidoreductase (EC 1.6.5.5)","tRNA-Ser-TGA","Cysteine desulfurase (EC 2.8.1.7)","missense_variantMODERATE"]
[54,"NC_000962",4223172,"T","C",{"v":161345,"d":"161,345"},"7.0","0.78","Nonsyn","gtc","gCc","479T>C","Val160Ala",null,"fig|83332.12.peg.4208","Rv3777",null,"Quinone oxidoreductase (EC 1.6.5.5)","tRNA-Ser-TGA","Cysteine desulfurase (EC 2.8.1.7)","missense_variantMODERATE"]
["MP2","NC_000962",4232327,"A","G","7512.07","219.0","1.00","Synon","cga","cgG","975A>G","Arg325Arg",null,"fig|83332.12.peg.4216","Rv3785",null,"FIG00817506: hypothetical protein","UDP-glucose 4-epimerase (EC 5.1.3.2)","Membrane proteins related to metalloendopeptidases","synonymous_variantLOW"]
[58,"NC_000962",4233634,"G","A","3383.08","104.0","1.00","Synon","aac","aaT","903C>T","Asn301Asn",null,"fig|83332.12.peg.4218","Rv3787c",null,"O-methyltransferase","Membrane proteins related to metalloendopeptidases","Nucleoside diphosphate kinase regulator","synonymous_variantLOW"]
[7011,"NC_000962",4236150,"C","T","2434.61","87.0","0.99","Synon","ggc","ggT","363C>T","Gly121Gly",null,"fig|83332.12.peg.4221","Rv3790",null,"Heteromeric decaprenylphosphoryl-beta-D-ribose 2'-epimerase (EC 1.1.98.3) subunit DprE1","Decaprenyl-monophosphoryl-beta-D-arabinose (DPA) translocase to periplasm","Heteromeric decaprenylphosphoryl-beta-D-ribose 2'-epimerase (EC 1.1.1.333) subunit DprE2","synonymous_variantLOW"]
[7739,"NC_000962",4236150,"C","T","2560.3","91.0","0.97","Synon","ggc","ggT","363C>T","Gly121Gly",null,"fig|83332.12.peg.4221","Rv3790",null,"Heteromeric decaprenylphosphoryl-beta-D-ribose 2'-epimerase (EC 1.1.98.3) subunit DprE1","Decaprenyl-monophosphoryl-beta-D-arabinose (DPA) translocase to periplasm","Heteromeric decaprenylphosphoryl-beta-D-ribose 2'-epimerase (EC 1.1.1.333) subunit DprE2","synonymous_variantLOW"]
["G01498","NC_000962",4240671,"C","T","2309.31","77.0","1.00","Nonsyn","acc","aTc","812C>T","Thr271Ile",null,"fig|83332.12.peg.4224","Rv3793","embC","Integral membrane indolylacetylinositol arabinosyltransferase EmbC (EC 2.4.2.-)","Arabinofuranosyltransferase AftA (EC 2.4.2.46)","Integral membrane indolylacetylinositol arabinosyltransferase EmbA (EC 2.4.2.-)","missense_variantMODERATE"]
["G01491","NC_000962",4242643,"C","T","4589.51","148.0","0.99","Synon","cgc","cgT","2784C>T","Arg928Arg",null,"fig|83332.12.peg.4224","Rv3793","embC","Integral membrane indolylacetylinositol arabinosyltransferase EmbC (EC 2.4.2.-)","Arabinofuranosyltransferase AftA (EC 2.4.2.46)","Integral membrane indolylacetylinositol arabinosyltransferase EmbA (EC 2.4.2.-)","synonymous_variantLOW"]
[54,"NC_000962",4242643,"C","T","270.85","10.0","1.00","Synon","cgc","cgT","2784C>T","Arg928Arg",null,"fig|83332.12.peg.4224","Rv3793","embC","Integral membrane indolylacetylinositol arabinosyltransferase EmbC (EC 2.4.2.-)","Arabinofuranosyltransferase AftA (EC 2.4.2.46)","Integral membrane indolylacetylinositol arabinosyltransferase EmbA (EC 2.4.2.-)","synonymous_variantLOW"]
["MP2","NC_000962",4244220,"C","T","5111.95","152.0","1.00","Synon","ctg","Ttg","988C>T","Leu330Leu",null,"fig|83332.12.peg.4225","Rv3794","embA","Integral membrane indolylacetylinositol arabinosyltransferase EmbA (EC 2.4.2.-)","Integral membrane indolylacetylinositol arabinosyltransferase EmbC (EC 2.4.2.-)","Integral membrane indolylacetylinositol arabinosyltransferase EmbB (EC 2.4.2.-)","synonymous_variantLOW"]
["G01492","NC_000962",4246864,"C","T","10129.8","325.0","0.98","Synon","gtc","gtT","267C>T","Val89Val",null,"fig|83332.12.peg.4226","Rv3795","embB","Integral membrane indolylacetylinositol arabinosyltransferase EmbB (EC 2.4.2.-)","Integral membrane indolylacetylinositol arabinosyltransferase EmbA (EC 2.4.2.-)","Putative uncharacterized protein BCG_3858","synonymous_variantMODERATE"]
[7739,"NC_000962",4251024,"C","G","2898.91","91.0","1.00",{"$nulls":10},"Putative uncharacterized protein BCG_3858","Acyl-CoA dehydrogenase (EC 1.3.8.-), Mycobacterial subgroup FadE35","intergenic_regionMODIFIER"]
["G01498","NC_000962",4251297,"G","C","2006.61","67.0","1.00","Synon","ggg","ggC","213G>C","Gly71Gly",null,"fig|83332.12.peg.4228","Rv3797","fadE35","Acyl-CoA dehydrogenase (EC 1.3.8.-), Mycobacterial subgroup FadE35","Putative uncharacterized protein BCG_3858","Mobile element protein","synonymous_variantLOW"]
[7011,"NC_000962",4251297,"G","C","2524.46","85.0","1.00","Synon","ggg","ggC","213G>C","Gly71Gly",null,"fig|83332.12.peg.4228","Rv3797","fadE35","Acyl-CoA dehydrogenase (EC 1.3.8.-), Mycobacterial subgroup FadE35","Putative uncharacterized protein BCG_3858","Mobile element protein","synonymous_variantLOW"]
["G01492","NC_000962",4252353,"C","T","10905.1","360.0","0.97","Synon","ggc","ggT","1269C>T","Gly423Gly",null,"fig|83332.12.peg.4228","Rv3797","fadE35","Acyl-CoA dehydrogenase (EC 1.3.8.-), Mycobacterial subgroup FadE35","Putative uncharacterized protein BCG_3858","Mobile element protein","synonymous_variantMODERATE"]
["G01222","NC_000962",4255922,"A","G",{"v":677316,"d":"677,316"},"25.0","1.00","Synon","cat","caC","27T>C","His9His",null,"fig|83332.12.peg.4230","Rv3799c","accD4","Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)","Mobile element protein","Polyketide synthase in FadD32 cluster","synonymous_variantLOW"]
["MP1","NC_000962",4255922,"A","G","6020.75","179.0","1.00","Synon","cat","caC","27T>C","His9His",null,"fig|83332.12.peg.4230","Rv3799c","accD4","Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)","Mobile element protein","Polyketide synthase in FadD32 cluster","synonymous_variantLOW"]
[64,"NC_000962",4257220,"A","G","1763.48","56.0","1.00","Synon","cgt","cgC","3861T>C","Arg1287Arg",null,"fig|83332.12.peg.4231","Rv3800c","pks13","Polyketide synthase in FadD32 cluster","Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD32","synonymous_variantLOW"]
[7739,"NC_000962",4259579,"G","C","1836.28","62.0","1.00","Nonsyn","gcc","gGc","1502C>G","Ala501Gly",null,"fig|83332.12.peg.4231","Rv3800c","pks13","Polyketide synthase in FadD32 cluster","Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD32","missense_variantMODIFIER"]
["G01498","NC_000962",4261499,"G","A","2336.26","77.0","1.00","Nonsyn","gcg","gTg","1544C>T","Ala515Val",null,"fig|83332.12.peg.4232","Rv3801c","fadD32","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD32","Polyketide synthase in FadD32 cluster","phospholipase/thioesterase","missense_variantMODERATE"]
["G01491","NC_000962",4263279,"A","G","4667.13","141.0","1.00",{"$nulls":10},"Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD32","phospholipase/thioesterase","intergenic_regionMODERATE"]
[64,"NC_000962",4263279,"A","G","1139.86","42.0","0.91",{"$nulls":10},"Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD32","phospholipase/thioesterase","intergenic_regionLOW"]
["G01491","NC_000962",4269351,"G","A","3889.58","123.0","0.98","Synon","gcc","gcT","483C>T","Ala161Ala",null,"fig|83332.12.peg.4237","Rv3806c",null,"5-Phosphoribosyl diphosphate (PRPP): decaprenyl-phosphate 5-phosphoribosyltransferase (EC 2.4.2.45)","Possible arabinofuranosyltransferase AftB","Putative decaprenylphosphoryl-5-phosphoribose phosphatase (EC 3.1.3.-)","synonymous_variantLOW"]
[54,"NC_000962",4269351,"G","A",{"v":366945,"d":"366,945"},"14.0","1.00","Synon","gcc","gcT","483C>T","Ala161Ala",null,"fig|83332.12.peg.4237","Rv3806c",null,"5-Phosphoribosyl diphosphate (PRPP): decaprenyl-phosphate 5-phosphoribosyltransferase (EC 2.4.2.45)","Possible arabinofuranosyltransferase AftB","Putative decaprenylphosphoryl-5-phosphoribose phosphatase (EC 3.1.3.-)","synonymous_variantLOW"]
["MP2","NC_000962",4269387,"T","G","7174.54","209.0","1.00","Nonsyn","gaa","gaC","447A>C","Glu149Asp",null,"fig|83332.12.peg.4237","Rv3806c",null,"5-Phosphoribosyl diphosphate (PRPP): decaprenyl-phosphate 5-phosphoribosyltransferase (EC 2.4.2.45)","Possible arabinofuranosyltransferase AftB","Putative decaprenylphosphoryl-5-phosphoribose phosphatase (EC 3.1.3.-)","missense_variantMODERATE"]
[58,"NC_000962",4269606,"A","G","2358.06","73.0","0.97","Synon","cgt","cgC","228T>C","Arg76Arg",null,"fig|83332.12.peg.4237","Rv3806c",null,"5-Phosphoribosyl diphosphate (PRPP): decaprenyl-phosphate 5-phosphoribosyltransferase (EC 2.4.2.45)","Possible arabinofuranosyltransferase AftB","Putative decaprenylphosphoryl-5-phosphoribose phosphatase (EC 3.1.3.-)","synonymous_variantLOW"]
[7011,"NC_000962",4277254,"GCC","GC","2771.06","97.0","0.87","Deletion","tggccc","tgGCc","686delC","Pro229fs","yes","fig|83332.12.peg.4244","Rv3812","PE_PGRS62","PE_PGRS family protein ","hypothetical protein","hypothetical protein","frameshift_variantMODERATE"]
["G01492","NC_000962",4287164,"A","G","7796.72","244.0","1.00",{"$nulls":10},"hypothetical protein","FIG01386146: Possible exported protein, Rv1184c","intergenic_regionMODIFIER"]
["G01222","NC_000962",4287361,"C","T","1177.46","36.0","1.00","Nonsyn","gcg","gTg","35C>T","Ala12Val",null,"fig|83332.12.peg.4256","Rv3822",null,"FIG01386146: Possible exported protein, Rv1184c","hypothetical protein","Transmembrane transport protein MmpL8/MmpL10/MmpL12","missense_variantMODERATE"]
["G01491","NC_000962",4287361,"C","T","3359.54","110.0","0.98","Nonsyn","gcg","gTg","35C>T","Ala12Val",null,"fig|83332.12.peg.4256","Rv3822",null,"FIG01386146: Possible exported protein, Rv1184c","hypothetical protein","Transmembrane transport protein MmpL8/MmpL10/MmpL12","missense_variantMODERATE"]
[54,"NC_000962",4287361,"C","T","7927.04","249.0","0.98","Nonsyn","gcg","gTg","35C>T","Ala12Val",null,"fig|83332.12.peg.4256","Rv3822",null,"FIG01386146: Possible exported protein, Rv1184c","hypothetical protein","Transmembrane transport protein MmpL8/MmpL10/MmpL12","missense_variantMODERATE"]
["MP2","NC_000962",4289953,"A","G","7222.72","216.0","1.00","Nonsyn","gtg","gCg","1562T>C","Val521Ala",null,"fig|83332.12.peg.4257","Rv3823c","mmpL8","Transmembrane transport protein MmpL8/MmpL10/MmpL12","FIG01386146: Possible exported protein, Rv1184c","PKS-associated protein PapA, condensation domain-containing","missense_variantMODERATE"]
["G01498","NC_000962",4290564,"G","T","1221.31","41.0","1.00","Synon","gcc","gcA","951C>A","Ala317Ala",null,"fig|83332.12.peg.4257","Rv3823c","mmpL8","Transmembrane transport protein MmpL8/MmpL10/MmpL12","FIG01386146: Possible exported protein, Rv1184c","PKS-associated protein PapA, condensation domain-containing","synonymous_variantLOW"]
[7739,"NC_000962",4290827,"C","G","4082.8","123.0","0.99","Nonsyn","ggg","Cgg","688G>C","Gly230Arg",null,"fig|83332.12.peg.4257","Rv3823c","mmpL8","Transmembrane transport protein MmpL8/MmpL10/MmpL12","FIG01386146: Possible exported protein, Rv1184c","PKS-associated protein PapA, condensation domain-containing","missense_variantMODERATE"]
["G01498","NC_000962",4292095,"C","A","2193.01","75.0","0.97","Synon","gcg","gcT","831G>T","Ala277Ala",null,"fig|83332.12.peg.4258","Rv3824c","papA1","PKS-associated protein PapA, condensation domain-containing","Transmembrane transport protein MmpL8/MmpL10/MmpL12","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","synonymous_variantLOW"]
["G01491","NC_000962",4296015,"G","A","4576.84","142.0","1.00","Synon","gac","gaT","3522C>T","AsMP1174Asp",null,"fig|83332.12.peg.4259","Rv3825c","pks2","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","PKS-associated protein PapA, condensation domain-containing","hypothetical protein","synonymous_variantHIGH"]
[54,"NC_000962",4296015,"G","A","18228.5","548.0","1.00","Synon","gac","gaT","3522C>T","AsMP1174Asp",null,"fig|83332.12.peg.4259","Rv3825c","pks2","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","PKS-associated protein PapA, condensation domain-containing","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",4298550,"G","C","1174.29","36.0","1.00","Synon","gtc","gtG","987C>G","Val329Val",null,"fig|83332.12.peg.4259","Rv3825c","pks2","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","PKS-associated protein PapA, condensation domain-containing","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",4298550,"G","C","6413.42","189.0","0.99","Synon","gtc","gtG","987C>G","Val329Val",null,"fig|83332.12.peg.4259","Rv3825c","pks2","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","PKS-associated protein PapA, condensation domain-containing","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",4300626,"C","A","4990.4","156.0","0.99","Nonsyn","gcc","gAc","98C>A","Ala33Asp",null,"fig|83332.12.peg.4262","Rv3826","fadD23","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD23","hypothetical protein","Mobile element protein","missense_variantMODERATE"]
[7739,"NC_000962",4302036,"T","C","2549.7","86.0","1.00","Nonsyn","acg","Gcg","751A>G","Thr251Ala",null,"fig|83332.12.peg.4263","Rv3827c",null,"Mobile element protein","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD23","Resolvase","missense_variantMODERATE"]
["G01498","NC_000962",4306155,"C","T","2362.16","76.0","1.00","Synon","agc","agT","399C>T","Ser133Ser",null,"fig|83332.12.peg.4267","Rv3831",null,"hypothetical protein","Transcriptional regulator, AcrR family","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",4307179,"G","A","5154.18","165.0","0.98","Nonsyn","gtc","Atc","313G>A","Val105Ile",null,"fig|83332.12.peg.4269","Rv3833",null,"Transcriptional regulator, AraC family","hypothetical protein","Seryl-tRNA synthetase (EC 6.1.1.11)","missense_variantMODERATE"]
["MP2","NC_000962",4307179,"G","A","8205.13","246.0","0.99","Nonsyn","gtc","Atc","313G>A","Val105Ile",null,"fig|83332.12.peg.4269","Rv3833",null,"Transcriptional regulator, AraC family","hypothetical protein","Seryl-tRNA synthetase (EC 6.1.1.11)","missense_variantMODERATE"]
["MP1","NC_000962",4309493,"C","G","7124.94","208.0","1.00","Synon","cgc","cgG","456C>G","Arg152Arg",null,"fig|83332.12.peg.4271","Rv3835",null,"Uncharacterized protein Rv3835","Seryl-tRNA synthetase (EC 6.1.1.11)","hypothetical protein","synonymous_variantMODERATE"]
[54,"NC_000962",4309493,"C","G","1916.9","62.0","0.94","Synon","cgc","cgG","456C>G","Arg152Arg",null,"fig|83332.12.peg.4271","Rv3835",null,"Uncharacterized protein Rv3835","Seryl-tRNA synthetase (EC 6.1.1.11)","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",4310743,"TGG","TGGG","6222.36","200.0","0.93","Insertion","tggcgt","TGGGcgt","334_335insG","Arg112_AsMP113fs","yes","fig|83332.12.peg.4272","Rv3836",null,"hypothetical protein","Uncharacterized protein Rv3835","putative phosphoglycerate mutase","frameshift_variantHIGH"]
[58,"NC_000962",4313128,"C","T",{"v":563002,"d":"563,002"},"22.0","0.92","Nonsyn","ccc","Tcc","364C>T","Pro122Ser",null,"fig|83332.12.peg.4275","Rv3839",null,"hypothetical protein","Prephenate dehydratase (EC 4.2.1.51)","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1","missense_variantMODIFIER"]
[7011,"NC_000962",4314645,"A","G","3116.24","100.0","0.99","Synon","cta","ctG","426A>G","Leu142Leu",null,"fig|83332.12.peg.4277","Rv3841","bfrB","Bacterial non-heme ferritin (EC 1.16.3.2)","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1","Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)","synonymous_variantLOW"]
["G01492","NC_000962",4315537,"G","C","7001.06","224.0","1.00","Nonsyn","gcc","gGc","32C>G","Ala11Gly",null,"fig|83332.12.peg.4278","Rv3842c","glpQ1","Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)","Bacterial non-heme ferritin (EC 1.16.3.2)","putative membrane protein","missense_variantMODERATE"]
["G01222","NC_000962",4316566,"C","G","1762.26","58.0","1.00",{"$nulls":10},"putative membrane protein","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",4316566,"C","G","5739.9","174.0","1.00",{"$nulls":10},"putative membrane protein","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",4323006,"G","A","2962.88","91.0","1.00","Synon","gcg","gcA","681G>A","Ala227Ala",null,"fig|83332.12.peg.4290","Rv3848",null,"FIG037441: Conserved transmembrane protein","hypothetical protein","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",4329782,"G","A","9550.45","300.0","1.00","Nonsyn","ccg","cTg","140C>T","Pro47Leu",null,"fig|83332.12.peg.4301",null,null,"hypothetical protein","putative membrane protein","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","missense_variantMODERATE"]
[58,"NC_000962",4329782,"G","A","7837.7","235.0","1.00","Nonsyn","ccg","cTg","140C>T","Pro47Leu",null,"fig|83332.12.peg.4301",null,null,"hypothetical protein","putative membrane protein","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","missense_variantMODERATE"]
[64,"NC_000962",4329782,"G","A","4214.46","128.0","0.99","Nonsyn","ccg","cTg","140C>T","Pro47Leu",null,"fig|83332.12.peg.4301",null,null,"hypothetical protein","putative membrane protein","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","missense_variantMODERATE"]
["MP2","NC_000962",4329782,"G","A","7477.97","221.0","1.00","Nonsyn","ccg","cTg","140C>T","Pro47Leu",null,"fig|83332.12.peg.4301",null,null,"hypothetical protein","putative membrane protein","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","missense_variantMODERATE"]
["MP1","NC_000962",4329782,"G","A","7910.71","233.0","0.99","Nonsyn","ccg","cTg","140C>T","Pro47Leu",null,"fig|83332.12.peg.4301",null,null,"hypothetical protein","putative membrane protein","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","missense_variantMODERATE"]
[54,"NC_000962",4329782,"G","A","9947.52","299.0","1.00","Nonsyn","ccg","cTg","140C>T","Pro47Leu",null,"fig|83332.12.peg.4301",null,null,"hypothetical protein","putative membrane protein","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","missense_variantMODERATE"]
["G01222","NC_000962",4330238,"C","T","1025.37","32.0","1.00","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
["G01491","NC_000962",4330238,"C","T","4749.01","148.0","0.99","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
["G01492","NC_000962",4330238,"C","T","9416.93","309.0","0.97","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
["G01498","NC_000962",4330238,"C","T","2171.53","71.0","0.99","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
[7011,"NC_000962",4330238,"C","T","2949.57","92.0","1.00","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
[7739,"NC_000962",4330238,"C","T","3213.36","101.0","1.00","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
[58,"NC_000962",4330238,"C","T","2476.78","72.0","1.00","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
[64,"NC_000962",4330238,"C","T","2439.61","73.0","1.00","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantLOW"]
["MP2","NC_000962",4330238,"C","T","7313.95","218.0","1.00","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
["MP1","NC_000962",4330238,"C","T","7865.35","235.0","1.00","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
[54,"NC_000962",4330238,"C","T","4504.01","140.0","0.99","Nonsyn","cgt","cAt","1268G>A","Arg423His",null,"fig|83332.12.peg.4302","Rv3858c","gltD","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","missense_variantMODERATE"]
["G01222","NC_000962",4334425,"G","C",{"v":842107,"d":"842,107"},"27.0","1.00","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",4334425,"G","C","4699.5","145.0","1.00","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",4334425,"G","C","10085.0","320.0","0.99","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",4334425,"G","C","1921.41","63.0","1.00","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",4334425,"G","C","2796.93","100.0","1.00","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",4334425,"G","C","2851.35","101.0","0.99","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",4334425,"G","C","5193.48","166.0","0.98","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",4334425,"G","C","5292.79","166.0","0.98","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",4334425,"G","C","9173.87","269.0","1.00","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",4334425,"G","C","8545.51","251.0","1.00","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",4334425,"G","C","11789.8","364.0","0.99","Nonsyn","cag","Gag","1657C>G","Gln553Glu",null,"fig|83332.12.peg.4303","Rv3859c","gltB","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",4336597,"C","A","969.41","39.0","1.00","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
["G01491","NC_000962",4336597,"C","A","5766.18","179.0","0.99","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
["G01492","NC_000962",4336597,"C","A","8192.01","261.0","0.99","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
["G01498","NC_000962",4336597,"C","A","2342.11","73.0","1.00","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
[7011,"NC_000962",4336597,"C","A","2707.94","86.0","1.00","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
[7739,"NC_000962",4336597,"C","A","3812.31","122.0","1.00","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
[58,"NC_000962",4336597,"C","A","2399.98","77.0","0.99","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
[64,"NC_000962",4336597,"C","A","1255.7","41.0","0.98","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
["MP2","NC_000962",4336597,"C","A","5779.24","172.0","0.99","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
["MP1","NC_000962",4336597,"C","A","5477.81","163.0","1.00","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
[54,"NC_000962",4336597,"C","A","18184.6","662.0","0.87","Nonsyn","tcc","tAc","134C>A","Ser45Tyr",null,"fig|83332.12.peg.4304",null,null,"hypothetical protein","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","Antiactivator of flagellar biosynthesis FleN, an ATPase","missense_variantMODERATE"]
["G01222","NC_000962",4338595,"GCT","GT","1601.01","50.0","0.98","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",4338595,"GCT","GT","3641.47","115.0","1.00","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",4338595,"GCT","GT","9908.16","324.0","1.00","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",4338595,"GCT","GT","2286.1","76.0","1.00","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",4338595,"GCT","GT","3102.77","104.0","0.99","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",4338595,"GCT","GT","2532.16","81.0","1.00","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[58,"NC_000962",4338595,"GCT","GT","1375.74","42.0","1.00","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[64,"NC_000962",4338595,"GCT","GT","1368.99","47.0","0.98","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",4338595,"GCT","GT","6892.69","211.0","1.00","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",4338595,"GCT","GT","6931.34","207.0","1.00","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[54,"NC_000962",4338595,"GCT","GT","1566.15","51.0","0.94","Deletion",{"$nulls":9},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",4338732,"G","A","1321.76","41.0","1.00",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",4338732,"G","A","3953.31","123.0","0.99",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",4338732,"G","A","9599.69","298.0","1.00",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",4338732,"G","A","2844.73","92.0","1.00",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",4338732,"G","A","4101.42","123.0","1.00",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",4338732,"G","A","3861.58","119.0","1.00",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[58,"NC_000962",4338732,"G","A","5048.64","150.0","1.00",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[64,"NC_000962",4338732,"G","A","2573.0","78.0","0.99",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",4338732,"G","A","8607.58","247.0","1.00",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",4338732,"G","A","7686.99","223.0","1.00",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
[54,"NC_000962",4338732,"G","A","29954.3","888.0","0.99",{"$nulls":10},"Transcriptional regulator WhiB-like WhiB6","Probable forkhead-associated protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",4339149,"G","T","1056.31","34.0","1.00","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODIFIER"]
["G01491","NC_000962",4339149,"G","T","3854.13","126.0","0.94","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["G01492","NC_000962",4339149,"G","T","8995.11","287.0","0.97","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["G01498","NC_000962",4339149,"G","T","1595.41","57.0","0.95","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[7011,"NC_000962",4339149,"G","T","3461.54","109.0","1.00","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[7739,"NC_000962",4339149,"G","T","2850.05","96.0","0.99","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[58,"NC_000962",4339149,"G","T",{"v":785712,"d":"785,712"},"27.0","0.96","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[64,"NC_000962",4339149,"G","T",{"v":937748,"d":"937,748"},"32.0","0.97","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["MP2","NC_000962",4339149,"G","T","7511.59","230.0","0.98","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["MP1","NC_000962",4339149,"G","T","6887.43","212.0","0.98","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[54,"NC_000962",4339149,"G","T","1492.9","52.0","1.00","Nonsyn","ggc","Tgc","169G>T","Gly57Cys",null,"fig|83332.12.peg.4308","Rv3863",null,"Probable forkhead-associated protein","Transcriptional regulator WhiB-like WhiB6","Secreted protein EspE, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["G01222","NC_000962",4351039,"G","T",{"v":754232,"d":"754,232"},"23.0","1.00","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
["G01491","NC_000962",4351039,"G","T","4609.91","144.0","0.99","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
["G01492","NC_000962",4351039,"G","T",{"v":161055,"d":"161,055"},"5.0","0.71","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
["G01498","NC_000962",4351039,"G","T","2235.95","71.0","1.00","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
[7011,"NC_000962",4351039,"G","T","2368.92","76.0","1.00","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
[7739,"NC_000962",4351039,"G","T","3433.51","111.0","1.00","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
[58,"NC_000962",4351039,"G","T","1149.68","35.0","1.00","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
[64,"NC_000962",4351039,"G","T",{"v":541958,"d":"541,958"},"18.0","1.00","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
["MP2","NC_000962",4351039,"G","T","6496.17","192.0","1.00","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
["MP1","NC_000962",4351039,"G","T","6430.08","190.0","1.00","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
[54,"NC_000962",4351039,"G","T","5514.44","172.0","1.00","Nonsyn","gaa","Taa","295G>T","Glu99*",null,"fig|83332.12.peg.4317","Rv3872","PE35","PE family protein ","FtsK/SpoIIIE family protein EccCb1, component of Type VII secretion system ESX-1","PPE family protein ","stop_gainedHIGH"]
["G01222","NC_000962",4352399,"G","A","1205.22","37.0","1.00","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
["G01491","NC_000962",4352399,"G","A","5663.78","177.0","0.98","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
["G01492","NC_000962",4352399,"G","A","11205.0","366.0","0.97","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
["G01498","NC_000962",4352399,"G","A","2668.25","91.0","0.94","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
[7011,"NC_000962",4352399,"G","A","2257.11","72.0","0.99","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
[7739,"NC_000962",4352399,"G","A","2559.69","82.0","1.00","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
[58,"NC_000962",4352399,"G","A",{"v":291808,"d":"291,808"},"10.0","1.00","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
[64,"NC_000962",4352399,"G","A","1060.74","36.0","0.95","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
["MP2","NC_000962",4352399,"G","A","9009.89","264.0","1.00","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
["MP1","NC_000962",4352399,"G","A","7789.41","229.0","1.00","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
[54,"NC_000962",4352399,"G","A","1721.45","60.0","1.00","Synon","cag","caA","126G>A","Gln42Gln",null,"fig|83332.12.peg.4319","Rv3874","esxB","10 kDa culture filtrate antigen CFP-10 (EsxB)","PPE family protein ","6 kDa early secretory antigenic target ESAT-6 (EsxA)","synonymous_variantLOW"]
["G01222","NC_000962",4356110,"G","C",{"v":670357,"d":"670,357"},"21.0","1.00","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
["G01491","NC_000962",4356110,"G","C","5469.68","169.0","0.99","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantMODIFIER"]
["G01492","NC_000962",4356110,"G","C","10888.6","345.0","0.99","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantMODIFIER"]
["G01498","NC_000962",4356110,"G","C","3032.11","99.0","1.00","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantMODIFIER"]
[7011,"NC_000962",4356110,"G","C","2839.53","87.0","1.00","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
[7739,"NC_000962",4356110,"G","C","2751.27","84.0","1.00","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
[58,"NC_000962",4356110,"G","C","5741.96","176.0","0.98","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
[64,"NC_000962",4356110,"G","C","4667.22","144.0","0.97","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
["MP2","NC_000962",4356110,"G","C","8017.5","236.0","1.00","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
["MP1","NC_000962",4356110,"G","C","7303.54","221.0","1.00","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
[54,"NC_000962",4356110,"G","C","10376.6","313.0","0.99","Synon","ctg","ctC","1032G>C","Leu344Leu",null,"fig|83332.12.peg.4322","Rv3877",null,"Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspI, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","synonymous_variantLOW"]
["G01222","NC_000962",4357421,"GGGCG","AGGCA","1005.94","36.0","0.97","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["G01491","NC_000962",4357421,"GGGCG","AGGCA","4963.38","165.0","0.93","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["G01492","NC_000962",4357421,"GGGCG","AGGCA","10600.9","339.0","0.95","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["G01498","NC_000962",4357421,"GGGCG","AGGCA","2644.97","86.0","0.91","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[7011,"NC_000962",4357421,"GGGCG","AGGCA","2415.42","84.0","0.99","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[7739,"NC_000962",4357421,"GGGCG","AGGCA","2121.04","76.0","0.96","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[58,"NC_000962",4357421,"GGGCG","AGGCA",{"v":469706,"d":"469,706"},"17.0","1.00","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[64,"NC_000962",4357421,"GGGCG","AGGCA",{"v":719194,"d":"719,194"},"17.0","1.00","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["MP2","NC_000962",4357421,"GGGCG","AGGCA","6216.37","178.0","0.99","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["MP1","NC_000962",4357421,"GGGCG","AGGCA","4865.83","138.0","1.00","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
[54,"NC_000962",4357421,"GGGCG","AGGCA",{"v":486628,"d":"486,628"},"14.0","1.00","Nonsyn","gggggcgtt","ggAGGCAtt","729GGGCG>AGGCA","GlyGlyVal243GlyGlyIle",null,"fig|83332.12.peg.4323","Rv3878",null,"Protein EspJ, component of Type VII secretion system ESX-1","Integral membrane protein EccD1, component of Type VII secretion system ESX-1","Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","missense_variantMODERATE"]
["G01222","NC_000962",4357597,"C","G","1537.22","48.0","1.00","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",4357597,"C","G","4807.91","153.0","0.98","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",4357597,"C","G","9455.23","313.0","1.00","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",4357597,"C","G","2913.79","95.0","0.99","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",4357597,"C","G","2909.95","90.0","1.00","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",4357597,"C","G","3466.44","108.0","1.00","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",4357597,"C","G",{"v":473065,"d":"473,065"},"15.0","1.00","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",4357597,"C","G","1049.95","33.0","0.94","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",4357597,"C","G","7629.13","224.0","1.00","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",4357597,"C","G","5781.48","172.0","1.00","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",4357597,"C","G",{"v":554572,"d":"554,572"},"18.0","1.00","Nonsyn","tgc","tCc","2147G>C","Cys716Ser",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",4359165,"G","C","439.62","14.0","1.00","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantMODERATE"]
["G01491","NC_000962",4359165,"G","C","4001.62","133.0","0.92","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantMODERATE"]
["G01492","NC_000962",4359165,"G","C","6538.07","212.0","0.90","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantMODERATE"]
["G01498","NC_000962",4359165,"G","C","2585.49","82.0","0.87","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantMODERATE"]
[7011,"NC_000962",4359165,"G","C","1952.31","96.0","0.77","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",4359165,"G","C","2343.85","102.0","0.73","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",4359165,"G","C",{"v":79827,"d":"79,827"},"42.0","0.55","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",4359165,"G","C","1010.53","83.0","0.63","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantMODERATE"]
["MP2","NC_000962",4359165,"G","C","7964.53","252.0","0.88","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantMODERATE"]
["MP1","NC_000962",4359165,"G","C","6268.51","206.0","0.84","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantMODERATE"]
[54,"NC_000962",4359165,"G","C","2387.24","144.0","0.73","Synon","acc","acG","579C>G","Thr193Thr",null,"fig|83332.12.peg.4324","Rv3879c",null,"Proline and alanine rich protein EspK, component of Type VII secretion system ESX-1","Protein EspJ, component of Type VII secretion system ESX-1","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",4364892,"G","T","1016.67","34.0","0.97",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["G01491","NC_000962",4364892,"G","T","3448.0","111.0","0.95",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["G01492","NC_000962",4364892,"G","T","8787.13","278.0","0.98",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["G01498","NC_000962",4364892,"G","T","2249.16","77.0","0.94",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[7011,"NC_000962",4364892,"G","T","3366.29","109.0","1.00",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[7739,"NC_000962",4364892,"G","T","2920.93","96.0","0.99",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[58,"NC_000962",4364892,"G","T",{"v":395508,"d":"395,508"},"14.0","1.00",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[64,"NC_000962",4364892,"G","T","91.9","8.0","0.67",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["MP2","NC_000962",4364892,"G","T","8064.91","244.0","1.00",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["MP1","NC_000962",4364892,"G","T","9150.46","275.0","0.99",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[54,"NC_000962",4364892,"G","T","1191.28","50.0","0.96",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["G01222","NC_000962",4364975,"G","A",{"v":985339,"d":"985,339"},"32.0","1.00",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["G01491","NC_000962",4364975,"G","A","3894.94","120.0","0.98",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["G01492","NC_000962",4364975,"G","A","9342.82","301.0","0.98",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["G01498","NC_000962",4364975,"G","A","2112.01","72.0","0.97",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[7011,"NC_000962",4364975,"G","A","3554.47","111.0","0.99",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[7739,"NC_000962",4364975,"G","A","3414.35","113.0","0.97",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[58,"NC_000962",4364975,"G","A","1408.42","45.0","0.98",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[64,"NC_000962",4364975,"G","A","1136.43","37.0","1.00",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["MP2","NC_000962",4364975,"G","A","8584.99","249.0","1.00",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["MP1","NC_000962",4364975,"G","A","7424.03","217.0","1.00",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
[54,"NC_000962",4364975,"G","A","2621.41","82.0","0.99",{"$nulls":10},"Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","intergenic_regionMODIFIER"]
["G01222","NC_000962",4366195,"T","C",{"v":609442,"d":"609,442"},"22.0","1.00","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["G01491","NC_000962",4366195,"T","C","3058.04","102.0","1.00","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["G01492","NC_000962",4366195,"T","C","9789.16","317.0","0.99","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["G01498","NC_000962",4366195,"T","C","2385.38","80.0","1.00","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[7011,"NC_000962",4366195,"T","C","2916.56","92.0","1.00","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[7739,"NC_000962",4366195,"T","C","2789.31","90.0","1.00","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[58,"NC_000962",4366195,"T","C",{"v":719244,"d":"719,244"},"25.0","0.96","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[64,"NC_000962",4366195,"T","C","1273.07","39.0","1.00","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["MP2","NC_000962",4366195,"T","C","8076.39","239.0","1.00","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["MP1","NC_000962",4366195,"T","C","7526.61","223.0","1.00","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[54,"NC_000962",4366195,"T","C",{"v":446798,"d":"446,798"},"15.0","0.94","Nonsyn","gag","gGg","623A>G","Glu208Gly",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["G01222","NC_000962",4366272,"G","C",{"v":761657,"d":"761,657"},"26.0","1.00","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01491","NC_000962",4366272,"G","C","3574.97","112.0","0.99","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01492","NC_000962",4366272,"G","C","9565.45","306.0","1.00","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01498","NC_000962",4366272,"G","C","2262.33","76.0","0.99","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[7011,"NC_000962",4366272,"G","C","3199.06","101.0","1.00","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[7739,"NC_000962",4366272,"G","C","3078.64","97.0","1.00","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[58,"NC_000962",4366272,"G","C",{"v":371605,"d":"371,605"},"12.0","0.86","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[64,"NC_000962",4366272,"G","C",{"v":515526,"d":"515,526"},"22.0","0.85","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["MP2","NC_000962",4366272,"G","C","8477.52","250.0","0.99","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["MP1","NC_000962",4366272,"G","C","7595.35","225.0","1.00","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[54,"NC_000962",4366272,"G","C",{"v":218377,"d":"218,377"},"10.0","0.83","Synon","gcc","gcG","546C>G","Ala182Ala",null,"fig|83332.12.peg.4330","Rv3884c",null,"AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP1, component of Type VII secretion system ESX-1","Membrane protein EccE2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01222","NC_000962",4367649,"A","G",{"v":695091,"d":"695,091"},"23.0","1.00","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01491","NC_000962",4367649,"A","G","5057.26","160.0","1.00","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01492","NC_000962",4367649,"A","G","11249.1","356.0","0.99","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01498","NC_000962",4367649,"A","G","2590.76","90.0","0.96","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[7011,"NC_000962",4367649,"A","G","3704.94","113.0","1.00","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[7739,"NC_000962",4367649,"A","G","2878.62","90.0","1.00","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[58,"NC_000962",4367649,"A","G","866.18","29.0","1.00","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[64,"NC_000962",4367649,"A","G","1327.26","44.0","0.96","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["MP2","NC_000962",4367649,"A","G","8607.23","249.0","1.00","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["MP1","NC_000962",4367649,"A","G","7375.44","217.0","1.00","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[54,"NC_000962",4367649,"A","G",{"v":980443,"d":"980,443"},"29.0","1.00","Synon","tat","taC","873T>C","Tyr291Tyr",null,"fig|83332.12.peg.4331","Rv3885c",null,"Membrane protein EccE2, component of Type VII secretion system ESX-2","AAA+ family protein ATPase EccA2, component of Type VII secretion system ESX-2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01222","NC_000962",4369000,"T","C",{"v":849902,"d":"849,902"},"29.0","1.00","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantLOW"]
["G01491","NC_000962",4369000,"T","C","5579.76","174.0","0.99","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantLOW"]
["G01492","NC_000962",4369000,"T","C","11742.0","382.0","0.98","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantLOW"]
["G01498","NC_000962",4369000,"T","C","2736.82","94.0","0.98","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantLOW"]
[7011,"NC_000962",4369000,"T","C","2807.36","93.0","1.00","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantLOW"]
[7739,"NC_000962",4369000,"T","C","2491.2","80.0","1.00","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantLOW"]
[58,"NC_000962",4369000,"T","C","1241.07","40.0","0.98","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",4369000,"T","C","1167.58","44.0","0.86","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",4369000,"T","C","5927.33","173.0","1.00","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantLOW"]
["MP1","NC_000962",4369000,"T","C","6111.79","179.0","1.00","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantLOW"]
[54,"NC_000962",4369000,"T","C","1017.89","33.0","0.97","Nonsyn","atg","Gtg","955A>G","Met319Val",null,"fig|83332.12.peg.4332","Rv3886c","mycMP2","Serine protease mycosin MycMP2, component of Type VII secretion system ESX-2","Membrane protein EccE2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",4371675,"G","C","1036.74","34.0","1.00",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
["G01491","NC_000962",4371675,"G","C","2722.58","89.0","0.98",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
["G01492","NC_000962",4371675,"G","C","9698.69","315.0","0.99",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
["G01498","NC_000962",4371675,"G","C","2425.6","84.0","0.95",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
[7011,"NC_000962",4371675,"G","C","3655.28","114.0","1.00",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
[7739,"NC_000962",4371675,"G","C","2722.59","87.0","0.98",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
[58,"NC_000962",4371675,"G","C",{"v":446139,"d":"446,139"},"15.0","1.00",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
[64,"NC_000962",4371675,"G","C",{"v":666813,"d":"666,813"},"21.0","1.00",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
["MP2","NC_000962",4371675,"G","C","7698.64","224.0","1.00",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
["MP1","NC_000962",4371675,"G","C","7438.93","221.0","1.00",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
[54,"NC_000962",4371675,"G","C",{"v":418241,"d":"418,241"},"15.0","1.00",{"$nulls":10},"Integral membrane protein EccD2, component of Type VII secretion system ESX-2","ATPase of AAA+ superfamily Rv3888c","intergenic_regionMODIFIER"]
["G01222","NC_000962",4372353,"G","C",{"v":628899,"d":"628,899"},"20.0","1.00","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01491","NC_000962",4372353,"G","C","3502.6","111.0","1.00","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01492","NC_000962",4372353,"G","C","8277.76","273.0","0.99","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01498","NC_000962",4372353,"G","C","2178.89","71.0","0.97","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[7011,"NC_000962",4372353,"G","C","2754.13","94.0","1.00","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[7739,"NC_000962",4372353,"G","C","1885.93","65.0","1.00","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[58,"NC_000962",4372353,"G","C","3634.0","110.0","1.00","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[64,"NC_000962",4372353,"G","C","3771.09","120.0","0.98","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["MP2","NC_000962",4372353,"G","C","8012.67","236.0","1.00","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["MP1","NC_000962",4372353,"G","C","6863.76","203.0","1.00","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[54,"NC_000962",4372353,"G","C","3361.43","110.0","0.97","Synon","cgc","cgG","327C>G","Arg109Arg",null,"fig|83332.12.peg.4335","Rv3888c",null,"ATPase of AAA+ superfamily Rv3888c","Integral membrane protein EccD2, component of Type VII secretion system ESX-2","Protein EspG2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01222","NC_000962",4373847,"TGG","TG","898.74","30.0","1.00","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
["G01491","NC_000962",4373847,"TGG","TG","2663.2","90.0","0.95","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
["G01492","NC_000962",4373847,"TGG","TG","9289.47","307.0","0.97","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
["G01498","NC_000962",4373847,"TGG","TG","3035.16","106.0","0.97","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
[7011,"NC_000962",4373847,"TGG","TG","2814.86","96.0","0.94","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
[7739,"NC_000962",4373847,"TGG","TG","2631.03","95.0","0.89","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
[58,"NC_000962",4373847,"TGG","TG",{"v":877409,"d":"877,409"},"40.0","0.77","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
[64,"NC_000962",4373847,"TGG","TG","1142.54","50.0","0.77","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
["MP2","NC_000962",4373847,"TGG","TG","7175.63","228.0","0.97","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
["MP1","NC_000962",4373847,"TGG","TG","7399.68","228.0","0.98","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
[54,"NC_000962",4373847,"TGG","TG","1268.12","65.0","0.71","Deletion","gcccag","gcCAg","84delC","Ala28fs","yes","fig|83332.12.peg.4337","Rv3890c","esxC","ESAT-6-like protein EsxC","Protein EspG2, component of Type VII secretion system ESX-2","ESAT-6-like protein EsxD","frameshift_variantHIGH"]
["G01222","NC_000962",4374228,"T","C",{"v":831069,"d":"831,069"},"26.0","1.00","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
["G01491","NC_000962",4374228,"T","C","4534.57","138.0","0.99","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
["G01492","NC_000962",4374228,"T","C","12759.8","412.0","0.99","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
["G01498","NC_000962",4374228,"T","C","3237.97","104.0","0.99","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
[7011,"NC_000962",4374228,"T","C","2524.32","79.0","1.00","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
[7739,"NC_000962",4374228,"T","C","3030.12","94.0","1.00","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
[58,"NC_000962",4374228,"T","C","2074.22","67.0","0.99","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
[64,"NC_000962",4374228,"T","C","1762.76","60.0","0.98","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
["MP2","NC_000962",4374228,"T","C","8664.38","262.0","1.00","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
["MP1","NC_000962",4374228,"T","C","7115.12","215.0","1.00","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
[54,"NC_000962",4374228,"T","C","3979.11","124.0","1.00","Nonsyn","acc","Gcc","145A>G","Thr49Ala",null,"fig|83332.12.peg.4338","Rv3891c","esxD","ESAT-6-like protein EsxD","ESAT-6-like protein EsxC","PPE family protein ","missense_variantMODERATE"]
["G01222","NC_000962",4375605,"G","A","1387.72","45.0","1.00","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["G01491","NC_000962",4375605,"G","A","5783.88","179.0","0.99","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["G01492","NC_000962",4375605,"G","A","10212.8","327.0","0.99","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["G01498","NC_000962",4375605,"G","A","3193.5","114.0","0.90","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[7011,"NC_000962",4375605,"G","A","3298.01","110.0","0.98","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[7739,"NC_000962",4375605,"G","A","2732.95","94.0","0.98","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[58,"NC_000962",4375605,"G","A",{"v":760046,"d":"760,046"},"25.0","0.96","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[64,"NC_000962",4375605,"G","A","1269.17","42.0","1.00","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["MP2","NC_000962",4375605,"G","A","6948.82","208.0","1.00","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["MP1","NC_000962",4375605,"G","A","7624.72","231.0","1.00","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[54,"NC_000962",4375605,"G","A","2176.4","68.0","1.00","Nonsyn","cat","Tat","79C>T","His27Tyr",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["G01222","NC_000962",4375628,"G","T","1350.09","46.0","1.00","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["G01491","NC_000962",4375628,"G","T","6295.52","192.0","1.00","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["G01492","NC_000962",4375628,"G","T","10349.5","326.0","1.00","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["G01498","NC_000962",4375628,"G","T","3668.62","119.0","1.00","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[7011,"NC_000962",4375628,"G","T","3181.94","98.0","0.99","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[7739,"NC_000962",4375628,"G","T","3255.04","101.0","0.99","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[58,"NC_000962",4375628,"G","T","1248.23","41.0","0.98","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[64,"NC_000962",4375628,"G","T","2057.09","65.0","1.00","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["MP2","NC_000962",4375628,"G","T","7281.39","212.0","1.00","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["MP1","NC_000962",4375628,"G","T","7925.91","234.0","1.00","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
[54,"NC_000962",4375628,"G","T","3663.81","118.0","0.99","Nonsyn","acg","aAg","56C>A","Thr19Lys",null,"fig|83332.12.peg.4339","Rv3892c","PPE69","PPE family protein ","ESAT-6-like protein EsxD","PE family protein ","missense_variantMODERATE"]
["G01222","NC_000962",4376768,"C","T",{"v":908295,"d":"908,295"},"31.0","0.89","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["G01491","NC_000962",4376768,"C","T","3111.29","118.0","0.86","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["G01492","NC_000962",4376768,"C","T","9788.69","331.0","0.92","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["G01498","NC_000962",4376768,"C","T","2158.38","76.0","0.90","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[7011,"NC_000962",4376768,"C","T","2681.66","91.0","0.98","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[7739,"NC_000962",4376768,"C","T","2627.52","92.0","0.97","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[58,"NC_000962",4376768,"C","T",{"v":905922,"d":"905,922"},"33.0","1.00","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[64,"NC_000962",4376768,"C","T",{"v":648326,"d":"648,326"},"23.0","0.96","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["MP2","NC_000962",4376768,"C","T","7156.59","207.0","1.00","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["MP1","NC_000962",4376768,"C","T","7979.9","238.0","0.99","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[54,"NC_000962",4376768,"C","T",{"v":576492,"d":"576,492"},"19.0","1.00","Nonsyn","gcc","Acc","3685G>A","Ala1229Thr",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["G01222","NC_000962",4377033,"G","C",{"v":520261,"d":"520,261"},"16.0","1.00","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01491","NC_000962",4377033,"G","C","4467.06","140.0","1.00","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01492","NC_000962",4377033,"G","C","9591.89","312.0","0.98","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01498","NC_000962",4377033,"G","C","2236.38","72.0","0.99","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[7011,"NC_000962",4377033,"G","C","3371.27","108.0","1.00","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[7739,"NC_000962",4377033,"G","C","3013.06","97.0","1.00","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[58,"NC_000962",4377033,"G","C","4142.19","130.0","1.00","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[64,"NC_000962",4377033,"G","C","4023.57","125.0","1.00","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["MP2","NC_000962",4377033,"G","C","8104.28","234.0","1.00","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["MP1","NC_000962",4377033,"G","C","7004.96","206.0","0.99","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
[54,"NC_000962",4377033,"G","C","9150.03","279.0","0.99","Synon","tcc","tcG","3420C>G","Ser1140Ser",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","synonymous_variantLOW"]
["G01222","NC_000962",4379680,"C","G",{"v":745349,"d":"745,349"},"23.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantLOW"]
["G01491","NC_000962",4379680,"C","G","5831.22","189.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantLOW"]
["G01492","NC_000962",4379680,"C","G","10775.2","342.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantLOW"]
["G01498","NC_000962",4379680,"C","G","2991.38","99.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantLOW"]
[7011,"NC_000962",4379680,"C","G","3063.47","93.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantLOW"]
[7739,"NC_000962",4379680,"C","G","3543.58","107.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantLOW"]
[58,"NC_000962",4379680,"C","G",{"v":721466,"d":"721,466"},"25.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
[64,"NC_000962",4379680,"C","G","1191.17","40.0","0.91","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["MP2","NC_000962",4379680,"C","G","7619.19","226.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantLOW"]
["MP1","NC_000962",4379680,"C","G","8107.86","239.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantLOW"]
[54,"NC_000962",4379680,"C","G","1063.82","37.0","1.00","Nonsyn","cgc","cCc","773G>C","Arg258Pro",null,"fig|83332.12.peg.4342","Rv3894c",null,"FtsK/SpoIIIE family protein EccC2, component of Type VII secretion system ESX-2","hypothetical protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","missense_variantMODERATE"]
["G01222","NC_000962",4382054,"T","C",{"v":712952,"d":"712,952"},"23.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
["G01491","NC_000962",4382054,"T","C","5102.77","161.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
["G01492","NC_000962",4382054,"T","C","11392.2","371.0","0.99","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
["G01498","NC_000962",4382054,"T","C","2215.85","73.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
[7011,"NC_000962",4382054,"T","C","2734.44","87.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
[7739,"NC_000962",4382054,"T","C","2651.05","88.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
[58,"NC_000962",4382054,"T","C","1897.95","58.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
[64,"NC_000962",4382054,"T","C","1488.26","47.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
["MP2","NC_000962",4382054,"T","C","6149.25","182.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
["MP1","NC_000962",4382054,"T","C","5324.66","160.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
[54,"NC_000962",4382054,"T","C","1296.05","39.0","1.00","Synon","gca","gcG","759A>G","Ala253Ala",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","synonymous_variantLOW"]
["G01222","NC_000962",4382103,"TAG","TG",{"v":775382,"d":"775,382"},"27.0","1.00","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
["G01491","NC_000962",4382103,"TAG","TG","5415.65","178.0","1.00","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
["G01492","NC_000962",4382103,"TAG","TG","12326.9","402.0","1.00","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
["G01498","NC_000962",4382103,"TAG","TG","2251.64","76.0","1.00","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
[7011,"NC_000962",4382103,"TAG","TG","2698.5","88.0","0.97","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
[7739,"NC_000962",4382103,"TAG","TG","2650.97","87.0","0.96","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
[58,"NC_000962",4382103,"TAG","TG","1530.72","47.0","0.92","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
[64,"NC_000962",4382103,"TAG","TG","2679.52","85.0","0.92","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
["MP2","NC_000962",4382103,"TAG","TG","5699.08","171.0","0.96","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
["MP1","NC_000962",4382103,"TAG","TG","5444.16","165.0","0.98","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
[54,"NC_000962",4382103,"TAG","TG","1025.33","32.0","0.80","Deletion","gcctat","gcCAt","709delT","Tyr237fs","yes","fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","frameshift_variantHIGH"]
["G01222","NC_000962",4382275,"G","T","1394.11","45.0","1.00","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",4382275,"G","T","5932.85","188.0","0.99","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",4382275,"G","T","14946.3","468.0","0.99","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",4382275,"G","T","3344.23","107.0","1.00","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",4382275,"G","T","2862.26","88.0","1.00","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",4382275,"G","T","2843.08","90.0","1.00","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",4382275,"G","T","2826.33","87.0","1.00","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",4382275,"G","T","1989.14","64.0","0.97","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",4382275,"G","T","5284.64","153.0","1.00","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",4382275,"G","T","5147.81","154.0","1.00","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",4382275,"G","T","4234.07","135.0","0.99","Nonsyn","caa","Aaa","538C>A","Gln180Lys",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",4382296,"T","C","1459.65","51.0","1.00","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",4382296,"T","C","5684.3","175.0","0.99","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",4382296,"T","C","14129.9","457.0","0.99","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",4382296,"T","C","3387.56","111.0","1.00","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",4382296,"T","C","2348.87","79.0","1.00","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",4382296,"T","C","2400.72","78.0","1.00","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",4382296,"T","C","2348.07","74.0","1.00","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",4382296,"T","C","2136.65","65.0","1.00","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",4382296,"T","C","5106.36","148.0","1.00","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",4382296,"T","C","5424.55","158.0","0.99","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",4382296,"T","C","5407.51","169.0","0.99","Nonsyn","atc","Gtc","517A>G","Ile173Val",null,"fig|83332.12.peg.4344","Rv3896c",null,"putative secreted protein","Membrane protein EccB2, component of Type VII secretion system ESX-2","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",4383655,"A","G",{"v":414949,"d":"414,949"},"15.0","1.00","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
["G01491","NC_000962",4383655,"A","G","3776.16","121.0","0.97","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
["G01492","NC_000962",4383655,"A","G","5410.87","175.0","0.96","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
["G01498","NC_000962",4383655,"A","G","1399.98","45.0","0.98","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
[7011,"NC_000962",4383655,"A","G","2498.33","79.0","0.99","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
[7739,"NC_000962",4383655,"A","G","3120.55","97.0","0.99","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
[58,"NC_000962",4383655,"A","G",{"v":277764,"d":"277,764"},"10.0","1.00","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
[64,"NC_000962",4383655,"A","G",{"v":531772,"d":"531,772"},"17.0","1.00","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
["MP2","NC_000962",4383655,"A","G","6340.79","192.0","0.99","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
["MP1","NC_000962",4383655,"A","G","4708.06","139.0","1.00","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
[54,"NC_000962",4383655,"A","G","4962.37","162.0","0.99","Nonsyn","tag","Cag","337T>C","Ter113Glnext*?",null,"fig|83332.12.peg.4346","Rv3898c",null,"hypothetical protein","hypothetical protein","Vegetative cell wall protein gMP1 precursor","stop_lostHIGH"]
["G01222","NC_000962",4384007,"C","G","1003.09","31.0","1.00",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODERATE"]
["G01491","NC_000962",4384007,"C","G","5785.18","179.0","0.99",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODERATE"]
["G01492","NC_000962",4384007,"C","G","12550.5","402.0","0.99",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODERATE"]
["G01498","NC_000962",4384007,"C","G","3165.02","100.0","1.00",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODERATE"]
[7011,"NC_000962",4384007,"C","G","3362.5","103.0","1.00",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODERATE"]
[7739,"NC_000962",4384007,"C","G","2817.31","87.0","0.99",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODERATE"]
[58,"NC_000962",4384007,"C","G","2528.41","80.0","1.00",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODIFIER"]
[64,"NC_000962",4384007,"C","G","1101.64","36.0","0.95",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODIFIER"]
["MP2","NC_000962",4384007,"C","G","8046.35","233.0","1.00",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODERATE"]
["MP1","NC_000962",4384007,"C","G","6320.45","184.0","1.00",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODERATE"]
[54,"NC_000962",4384007,"C","G","10075.8","306.0","1.00",{"$nulls":10},"hypothetical protein","Vegetative cell wall protein gMP1 precursor","intergenic_regionMODERATE"]
["G01222","NC_000962",4385917,"G","A",{"v":908319,"d":"908,319"},"28.0","1.00","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
["G01491","NC_000962",4385917,"G","A","5102.59","161.0","0.98","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
["G01492","NC_000962",4385917,"G","A","9598.8","308.0","0.97","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
["G01498","NC_000962",4385917,"G","A","2123.82","70.0","0.97","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
[7011,"NC_000962",4385917,"G","A","2800.6","95.0","0.99","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
[7739,"NC_000962",4385917,"G","A","2508.72","95.0","0.97","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
[58,"NC_000962",4385917,"G","A","8493.19","271.0","0.99","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
[64,"NC_000962",4385917,"G","A","6170.57","194.0","0.97","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
["MP2","NC_000962",4385917,"G","A","6704.81","196.0","1.00","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
["MP1","NC_000962",4385917,"G","A","6848.91","202.0","1.00","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
[54,"NC_000962",4385917,"G","A","29119.9","949.0","0.99","Nonsyn","gcg","gTg","389C>T","Ala130Val",null,"fig|83332.12.peg.4348","Rv3900c",null,"hypothetical protein","Vegetative cell wall protein gMP1 precursor","hypothetical protein","missense_variantMODERATE"]
["G01222","NC_000962",4393178,"A","G","772.07","27.0","1.00",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
["G01491","NC_000962",4393178,"A","G","4863.14","155.0","0.99",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
["G01492","NC_000962",4393178,"A","G","12202.8","404.0","0.99",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
["G01498","NC_000962",4393178,"A","G","2957.02","95.0","0.98",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
[7011,"NC_000962",4393178,"A","G","2405.23","91.0","1.00",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
[7739,"NC_000962",4393178,"A","G","1717.6","64.0","1.00",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
[58,"NC_000962",4393178,"A","G","1893.15","62.0","1.00",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
[64,"NC_000962",4393178,"A","G","1797.1","60.0","0.97",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
["MP2","NC_000962",4393178,"A","G","6302.48","188.0","0.98",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
["MP1","NC_000962",4393178,"A","G","6455.82","196.0","1.00",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
[54,"NC_000962",4393178,"A","G","3215.95","100.0","1.00",{"$nulls":10},"CCA tRNA nucleotidyltransferase (EC 2.7.7.72)","hypothetical protein","intergenic_regionMODIFIER"]
["G01222","NC_000962",4393838,"C","T","1082.34","34.0","1.00","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
["G01491","NC_000962",4393838,"C","T","7624.94","235.0","1.00","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
["G01492","NC_000962",4393838,"C","T","12986.1","411.0","0.99","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
["G01498","NC_000962",4393838,"C","T","2137.14","71.0","0.97","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
[7011,"NC_000962",4393838,"C","T","2968.94","95.0","0.99","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
[7739,"NC_000962",4393838,"C","T","2466.92","78.0","1.00","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
[58,"NC_000962",4393838,"C","T",{"v":149819,"d":"149,819"},"6.0","1.00","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
[64,"NC_000962",4393838,"C","T","883.56","28.0","1.00","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
["MP2","NC_000962",4393838,"C","T","7066.31","211.0","0.99","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
["MP1","NC_000962",4393838,"C","T","5743.46","179.0","0.99","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
[54,"NC_000962",4393838,"C","T",{"v":625854,"d":"625,854"},"22.0","1.00","Synon","ctc","ctT","216C>T","Leu72Leu",null,"fig|83332.12.peg.4358","Rv3908",null,"Diadenosine hexaphosphate (Ap6A) hydrolase","hypothetical protein","FIG01967133: Putative secreted protein","synonymous_variantLOW"]
["G01222","NC_000962",4394210,"G","C",{"v":923228,"d":"923,228"},"29.0","1.00","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["G01491","NC_000962",4394210,"G","C","5382.23","176.0","1.00","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["G01492","NC_000962",4394210,"G","C","10163.0","340.0","0.98","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["G01498","NC_000962",4394210,"G","C","1928.9","63.0","0.98","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
[7011,"NC_000962",4394210,"G","C","3391.46","106.0","1.00","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
[7739,"NC_000962",4394210,"G","C","2824.41","86.0","1.00","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
[58,"NC_000962",4394210,"G","C","1163.71","34.0","0.97","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
[64,"NC_000962",4394210,"G","C","1935.22","62.0","1.00","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["MP2","NC_000962",4394210,"G","C","6774.43","200.0","1.00","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["MP1","NC_000962",4394210,"G","C","5275.91","158.0","0.99","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
[54,"NC_000962",4394210,"G","C","1371.99","41.0","0.98","Nonsyn","ggc","Cgc","19G>C","Gly7Arg",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["G01222","NC_000962",4395387,"A","G","1153.23","39.0","0.97","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["G01491","NC_000962",4395387,"A","G","6856.85","212.0","0.99","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantLOW"]
["G01492","NC_000962",4395387,"A","G","9673.12","312.0","1.00","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantLOW"]
["G01498","NC_000962",4395387,"A","G","2371.29","81.0","0.95","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantLOW"]
[7011,"NC_000962",4395387,"A","G","2144.07","70.0","1.00","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
[7739,"NC_000962",4395387,"A","G","2055.79","67.0","1.00","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
[58,"NC_000962",4395387,"A","G","1107.6","37.0","1.00","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
[64,"NC_000962",4395387,"A","G",{"v":959405,"d":"959,405"},"32.0","0.97","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["MP2","NC_000962",4395387,"A","G","4957.46","150.0","0.99","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["MP1","NC_000962",4395387,"A","G","5069.61","154.0","1.00","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
[54,"NC_000962",4395387,"A","G","1613.27","53.0","1.00","Nonsyn","aac","aGc","1196A>G","Asn399Ser",null,"fig|83332.12.peg.4359","Rv3909",null,"FIG01967133: Putative secreted protein","Diadenosine hexaphosphate (Ap6A) hydrolase","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","missense_variantMODERATE"]
["G01222","NC_000962",4400660,"ACC","AC",{"v":620127,"d":"620,127"},"26.0","0.96","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
["G01491","NC_000962",4400660,"ACC","AC","6211.72","217.0","0.92","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
["G01492","NC_000962",4400660,"ACC","AC","10015.4","337.0","0.96","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
["G01498","NC_000962",4400660,"ACC","AC","1706.81","60.0","0.95","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
[7011,"NC_000962",4400660,"ACC","AC",{"v":939164,"d":"939,164"},"34.0","0.92","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
[7739,"NC_000962",4400660,"ACC","AC","1477.37","51.0","1.00","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
[58,"NC_000962",4400660,"ACC","AC",{"v":403405,"d":"403,405"},"22.0","0.76","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
[64,"NC_000962",4400660,"ACC","AC",{"v":376862,"d":"376,862"},"23.0","0.68","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
["MP2","NC_000962",4400660,"ACC","AC","3642.14","114.0","0.98","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
["MP1","NC_000962",4400660,"ACC","AC","2680.66","87.0","0.98","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
[54,"NC_000962",4400660,"ACC","AC",{"v":174659,"d":"174,659"},"23.0","0.56","Deletion","acc","AC","477delC","Thr159fs","yes","fig|83332.12.peg.4361","Rv3911","sigM","RNA polymerase ECF-type sigma factor","Peptidoglycan lipid II flippase MurJ / Pseudokinase domain in MviN","FIG00822885: hypothetical protein","frameshift_variantHIGH"]
["G01222","NC_000962",4401897,"A","G",{"v":638352,"d":"638,352"},"23.0","1.00","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variant"]
["G01491","NC_000962",4401897,"A","G","6240.71","198.0","0.99","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variant"]
["G01492","NC_000962",4401897,"A","G","12200.8","391.0","0.99","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variant"]
["G01498","NC_000962",4401897,"A","G","2040.9","69.0","0.97","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variant"]
[7011,"NC_000962",4401897,"A","G","2443.34","78.0","1.00","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variant"]
[7739,"NC_000962",4401897,"A","G","2808.59","88.0","1.00","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variant"]
[58,"NC_000962",4401897,"A","G","1700.66","58.0","1.00","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variantMODERATE"]
[64,"NC_000962",4401897,"A","G",{"v":605637,"d":"605,637"},"70.0","0.56","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variantMODERATE"]
["MP2","NC_000962",4401897,"A","G","6828.01","201.0","1.00","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variant"]
["MP1","NC_000962",4401897,"A","G","7051.78","206.0","1.00","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variant"]
[54,"NC_000962",4401897,"A","G","1166.86","39.0","0.91","Nonsyn","gac","gGc","170A>G","As58Gly",null,"fig|83332.12.peg.4363","Rv3913","trxB2","Thioredoxin reductase (EC 1.8.1.9)","FIG00822885: hypothetical protein","Thioredoxin","missense_variantMODERATE"]
["G01222","NC_000962",4407588,"T","C",{"v":611668,"d":"611,668"},"19.0","1.00","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
["G01491","NC_000962",4407588,"T","C","4311.91","135.0","1.00","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
["G01492","NC_000962",4407588,"T","C","10895.7","350.0","0.99","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
["G01498","NC_000962",4407588,"T","C","1948.49","71.0","1.00","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
[7011,"NC_000962",4407588,"T","C","3701.36","120.0","1.00","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
[7739,"NC_000962",4407588,"T","C","2795.8","90.0","1.00","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
[58,"NC_000962",4407588,"T","C","1502.5","52.0","0.98","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
[64,"NC_000962",4407588,"T","C","2358.21","78.0","0.92","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
["MP2","NC_000962",4407588,"T","C","8546.58","251.0","1.00","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
["MP1","NC_000962",4407588,"T","C","8509.61","254.0","1.00","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
[54,"NC_000962",4407588,"T","C","2611.57","93.0","0.95","Synon","gca","gcG","615A>G","Ala205Ala",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","synonymous_variantLOW"]
["G01222","NC_000962",4407904,"G","A",{"v":830156,"d":"830,156"},"29.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
["G01491","NC_000962",4407904,"G","A","5649.18","178.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
["G01492","NC_000962",4407904,"G","A","11240.2","363.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
["G01498","NC_000962",4407904,"G","A","1377.1","49.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
[7011,"NC_000962",4407904,"G","A","2974.16","91.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
[7739,"NC_000962",4407904,"G","A","2687.61","85.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
[58,"NC_000962",4407904,"G","A","7253.04","216.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
[64,"NC_000962",4407904,"G","A","5195.48","156.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
["MP2","NC_000962",4407904,"G","A","8369.56","247.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
["MP1","NC_000962",4407904,"G","A","7663.01","225.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
[54,"NC_000962",4407904,"G","A","13889.3","431.0","1.00","Nonsyn","tct","tTt","299C>T","Ser100Phe",null,"fig|83332.12.peg.4369","Rv3919c","gidB","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Chromosome (plasmid) partitioning protein ParA","RNA-binding protein Jag","missense_variantMODERATE"]
["G01222","NC_000962",4408570,"G","A",{"v":553585,"d":"553,585"},"17.0","1.00","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
["G01491","NC_000962",4408570,"G","A","4362.28","138.0","0.99","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
["G01492","NC_000962",4408570,"G","A","9127.38","291.0","0.98","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
["G01498","NC_000962",4408570,"G","A","1886.72","66.0","0.99","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
[7011,"NC_000962",4408570,"G","A","2664.18","90.0","1.00","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
[7739,"NC_000962",4408570,"G","A","2474.26","80.0","1.00","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
[58,"NC_000962",4408570,"G","A","1581.57","54.0","0.98","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
[64,"NC_000962",4408570,"G","A","1761.2","60.0","0.95","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
["MP2","NC_000962",4408570,"G","A","9099.96","273.0","1.00","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
["MP1","NC_000962",4408570,"G","A","8434.93","248.0","1.00","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
[54,"NC_000962",4408570,"G","A","4617.99","149.0","0.98","Nonsyn","cgg","Tgg","328C>T","Arg110Trp",null,"fig|83332.12.peg.4370","Rv3920c",null,"RNA-binding protein Jag","16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170)","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","missense_variantMODERATE"]
["G01222","NC_000962",4408920,"AGGC","GGGT",{"v":886194,"d":"886,194"},"30.0","1.00",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
["G01491","NC_000962",4408920,"AGGC","GGGT","4394.17","140.0","0.99",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
["G01492","NC_000962",4408920,"AGGC","GGGT","11767.0","374.0","0.98",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionLOW"]
["G01498","NC_000962",4408920,"AGGC","GGGT","1671.82","52.0","0.98",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
[7011,"NC_000962",4408920,"AGGC","GGGT","2365.95","77.0","0.90",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
[7739,"NC_000962",4408920,"AGGC","GGGT","2030.45","64.0","0.86",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
[58,"NC_000962",4408920,"AGGC","GGGT","955.66","33.0","0.92",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
[64,"NC_000962",4408920,"AGGC","GGGT",{"v":735657,"d":"735,657"},"20.0","1.00",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
["MP2","NC_000962",4408920,"AGGC","GGGT","7513.07","214.0","1.00",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
["MP1","NC_000962",4408920,"AGGC","GGGT","6804.67","198.0","0.98",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
[54,"NC_000962",4408920,"AGGC","GGGT","1424.08","46.0","0.96",{"$nulls":10},"RNA-binding protein Jag","Inner membrane protein translocase and chaperone YidC, short form OxaI-like","intergenic_regionMODIFIER"]
["G01222","NC_000962",4409991,"G","A","1271.35","41.0","1.00","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
["G01491","NC_000962",4409991,"G","A","3316.52","104.0","0.97","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
["G01492","NC_000962",4409991,"G","A","7935.97","257.0","0.97","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
["G01498","NC_000962",4409991,"G","A","1951.44","63.0","1.00","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
[7011,"NC_000962",4409991,"G","A","3124.45","97.0","0.99","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
[7739,"NC_000962",4409991,"G","A","2581.06","80.0","0.99","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
[58,"NC_000962",4409991,"G","A","6024.21","189.0","0.98","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
[64,"NC_000962",4409991,"G","A","1919.35","65.0","0.98","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
["MP2","NC_000962",4409991,"G","A","10007.2","289.0","1.00","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
["MP1","NC_000962",4409991,"G","A","10609.8","310.0","1.00","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]
[54,"NC_000962",4409991,"G","A","15613.3","500.0","0.99","Synon","ctg","Ttg","79C>T","Leu27Leu",null,"fig|83332.12.peg.4371","Rv3921c",null,"Inner membrane protein translocase and chaperone YidC, short form OxaI-like","RNA-binding protein Jag","Membrane protein insertion efficiency factor YidD","synonymous_variantLOW"]